Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

6040113 .. 6042596

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05790.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTCCCAAAAAGGGTGTAAAAGCTCCCGTTGCCGCCTCGAAGAAGAAGCCGGAGAAGGTGGTGAACCCACTGTTCGAGAAGCGGCCGAAGCAATTCGGGATCGGAGGGGCGTTGCCTCCCAAGAGGGATCTGACCCGATTCGTTAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAGAGAATCCTTCAGCAGAGGCTTAAGGTTCCTCCTGCTTTGAACCAGTTCACCAAGACCCTCGACAAGAACATCGCTACAAGCCTGTTCAAGATGCTTTTGAAGTATCGGCCTGAGGACAAGGCAGAGAAGAAGGAGCGTCTCTTGACAAGGGCACAACAAGAAACTCAAGGAATAACTGTTGAAAACAAGAAGCCAATTGTTGTGAAATATGGTCTCAACCATGTCACCTACCTCATTGAGCAGAATAAGGCTCAACTTGTAGTTATTGCTCATGATGTTGATCCAATAGAGTTGGTTGTCTGGCTCCCTGCCCTGTGCAGGAAGATGCAAATCCCCTACTGCATTGTGAAGGGCAAAGCACGCTTGGGAGCAATTGTCCATAAAAAAACTGCTTCGGTATTGTGCCTGACAACGATCAAGAATCAAGATAGGATGGATTTCAGCAAGGTCTTAGAAGCAATAAATGCCAACTTTAATGACAAGTATGAGGAATACAGGAAAAAGTGGGGTGGTGGCATCATGGGTTCCAAATCCCAGGCCAAAACGAAGGCCAAGGAAAGGCTCCTCGCGAGAGAGGCTGCTCAAAGGATGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

260

Amino Acids

29.51

Weight (kDa)

10.27

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	123 - 205	4.4e-25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	752
AciI	CCGC	2 cut(s)	36, 85
AclWI	GGATC	3 cut(s)	110, 138, 458
AcoI	YGGCCR	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	14, 501, 741
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	223, 271, 283, 365
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	2 cut(s)	326, 401
AlwI	GGATC	3 cut(s)	110, 138, 458
AoxI	GGCC	5 cut(s)	86, 152, 290, 720, 732
ApeKI	GCWGC	1 cut(s)	761
Asp700I	GAANNNNTTC	2 cut(s)	95, 227
AspS9I	GGNCC	2 cut(s)	5, 153
AsuHPI	GGTGA	3 cut(s)	76, 223, 400
AvaII	GGWCC	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	719
BcoDI	GTCTC	2 cut(s)	326, 401
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	3 cut(s)	36, 86, 762
BlsI	GCNGC	3 cut(s)	37, 87, 763
Bme1390I	CCNGG	1 cut(s)	719
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 153
BmiI	GGNNCC	6 cut(s)	6, 7, 210, 488, 709, 746
BmrFI	CCNGG	1 cut(s)	719
BmsI	GCATC	3 cut(s)	264, 498, 708
BpuEI	CTTGAG	1 cut(s)	333
BsaBI	GATNNNNATC	2 cut(s)	462, 512
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	156, 717, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 501, 741
Bse1I	ACTGG	1 cut(s)	226
Bse21I	CCTNAGG	1 cut(s)	294
Bse8I	GATNNNNATC	2 cut(s)	462, 512
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	3 cut(s)	156, 717, 735
BseGI	GGATG	2 cut(s)	621, 777
BseJI	GATNNNNATC	2 cut(s)	462, 512
BseLI	CCNNNNNNNGG	3 cut(s)	14, 501, 741
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	737
BseSI	GKGCMC	1 cut(s)	337
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	748
BsgI	GTGCAG	1 cut(s)	520
Bsh1236I	CGCG	1 cut(s)	752
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	5 cut(s)	88, 154, 292, 722, 734
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	14, 501, 741
BsmAI	GTCTC	2 cut(s)	326, 401
BsmBI	CGTCTC	1 cut(s)	326
BsnI	GGCC	5 cut(s)	88, 154, 292, 722, 734
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	102, 130, 463, 597
Bsp68I	TCGCGA	1 cut(s)	752
BspACI	CCGC	2 cut(s)	36, 85
BspANI	GGCC	5 cut(s)	88, 154, 292, 722, 734
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	752
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	6 cut(s)	6, 7, 210, 488, 709, 746
BspPI	GGATC	3 cut(s)	110, 138, 458
BspTI	CTTAAG	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	156, 717, 735
BssMI	GATC	4 cut(s)	102, 130, 463, 597
BssT1I	CCWWGG	2 cut(s)	156, 735
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	2 cut(s)	75, 361
Bst6I	CTCTTC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	294, 634
BstF5I	GGATG	2 cut(s)	621, 777
BstFNI	CGCG	1 cut(s)	752
BstKTI	GATC	4 cut(s)	105, 133, 466, 600
BstMAI	GTCTC	2 cut(s)	326, 401
BstMBI	GATC	4 cut(s)	102, 130, 463, 597
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
BstNI	CCWGG	1 cut(s)	719
BstSCI	CCNGG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	337
BstUI	CGCG	1 cut(s)	752
BstV1I	GCAGC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BstZI	CGGCCG	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	88, 154, 292, 722, 734
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	621, 777
BtsIMutI	CAGTG	1 cut(s)	71
BtuMI	TCGCGA	1 cut(s)	752
Cac8I	GCNNGC	1 cut(s)	544
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	5, 153
CseI	GACGC	1 cut(s)	308
CviAII	CATG	3 cut(s)	404, 455, 703
DdeI	CTNAG	2 cut(s)	294, 634
DpnI	GATC	4 cut(s)	104, 132, 465, 599
DpnII	GATC	4 cut(s)	102, 130, 463, 597
EaeI	YGGCCR	1 cut(s)	86
EagI	CGGCCG	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
EclXI	CGGCCG	1 cut(s)	86
Eco130I	CCWWGG	2 cut(s)	156, 735
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	5
Eco52I	CGGCCG	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	717
EcoT14I	CCWWGG	2 cut(s)	156, 735
ErhI	CCWWGG	2 cut(s)	156, 735
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	3 cut(s)	407, 458, 706
FaiI	YATR	6 cut(s)	393, 405, 456, 564, 669, 704
FatI	CATG	3 cut(s)	403, 454, 702
Fnu4HI	GCNGC	3 cut(s)	36, 86, 762
FokI	GGATG	1 cut(s)	628
Fsp4HI	GCNGC	3 cut(s)	36, 86, 762
GluI	GCNGC	3 cut(s)	36, 86, 762
HaeIII	GGCC	5 cut(s)	88, 154, 292, 722, 734
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	407, 458, 706
HinfI	GANTC	4 cut(s)	141, 169, 186, 604
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	76, 223, 400
Hpy166II	GTNNAC	2 cut(s)	67, 231
Hpy188I	TCNGA	4 cut(s)	107, 135, 168, 174
Hpy188III	TCNNGA	8 cut(s)	79, 100, 271, 325, 455, 601, 608, 751
Hpy8I	GTNNAC	2 cut(s)	67, 231
HpyAV	CCTTC	5 cut(s)	52, 200, 307, 526, 724
HpyCH4III	ACNGT	2 cut(s)	75, 361
HpyCH4V	TGCA	3 cut(s)	501, 511, 525
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
HpyF3I	CTNAG	2 cut(s)	294, 634
Hsp92II	CATG	3 cut(s)	407, 458, 706
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	102, 130, 463, 597
LmnI	GCTCC	5 cut(s)	31, 316, 492, 551, 750
Lsp1109I	GCAGC	1 cut(s)	748
LweI	GCATC	3 cut(s)	264, 498, 708
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	4 cut(s)	104, 132, 465, 599
MboI	GATC	4 cut(s)	102, 130, 463, 597
MboII	GAAGA	6 cut(s)	55, 58, 190, 193, 322, 517
MfeI	CAATTG	2 cut(s)	378, 555
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	3 cut(s)	95, 378, 555
MroXI	GAANNNNTTC	2 cut(s)	95, 227
MseI	TTAA	3 cut(s)	147, 204, 657
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	719
MunI	CAATTG	2 cut(s)	378, 555
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	1 cut(s)	752
MwoI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
NdeII	GATC	4 cut(s)	102, 130, 463, 597
NlaIII	CATG	3 cut(s)	407, 458, 706
NlaIV	GGNNCC	6 cut(s)	6, 7, 210, 488, 709, 746
NmuCI	GTSAC	1 cut(s)	406
NruI	TCGCGA	1 cut(s)	752
PagI	TCATGA	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	95, 227
PfeI	GAWTC	4 cut(s)	141, 169, 186, 604
PkrI	GCNGC	3 cut(s)	37, 87, 763
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	6 cut(s)	6, 7, 210, 488, 709, 746
PspPI	GGNCC	2 cut(s)	5, 153
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	130
RruI	TCGCGA	1 cut(s)	752
SaqAI	TTAA	3 cut(s)	147, 204, 657
SatI	GCNGC	3 cut(s)	36, 86, 762
Sau3AI	GATC	4 cut(s)	102, 130, 463, 597
Sau96I	GGNCC	2 cut(s)	5, 153
ScrFI	CCNGG	1 cut(s)	719
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	7 cut(s)	28, 63, 210, 413, 417, 633, 779
SfaNI	GCATC	3 cut(s)	264, 498, 708
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	203, 348
SmoI	CTYRAG	2 cut(s)	203, 348
Sse9I	AATT	3 cut(s)	95, 378, 555
SsiI	CCGC	2 cut(s)	36, 85
StyD4I	CCNGG	1 cut(s)	717
StyI	CCWWGG	2 cut(s)	156, 735
TaaI	ACNGT	2 cut(s)	75, 361
TaqI	TCGA	3 cut(s)	41, 78, 243
TasI	AATT	3 cut(s)	95, 378, 555
TauI	GCSGC	2 cut(s)	38, 88
TfiI	GAWTC	4 cut(s)	141, 169, 186, 604
Tru1I	TTAA	3 cut(s)	147, 204, 657
Tru9I	TTAA	3 cut(s)	147, 204, 657
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	406
TspRI	CASTG	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	95, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.