Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

31042587 .. 31045805

Gene Structure 3219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATAGAGGAGGTCAAGAAGGCTTACAAGGAGGATTTGAAGCTTCATCTAAGAATGACAACCAGTCCCCCAAGGCCACGGGAATGGTATCAAGAAGCCCTAGAGGCATCGCCACACTTTCACCAACAGGGTGCCAATAGAAGTACCTTATTGGAATCAAGTCTTCGTGGACCTGGGATGGGCACCGATGGTGGATATTGGAAGGGCAACAAGCCTGTTCAAGATGCTTCGAAGTATAGGCTCGAAGACAAAGCGAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCTCAGCAGAGACCGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAAAACAAGGCCCGGCTTGTGGTTATCGCTCATGATGTCGATCCGGTTGAGTTGGTTGTATGGCTCCCTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

149

Amino Acids

16.81

Weight (kDa)

6.98

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	99 - 149	1.5e-10	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 182
AclWI	GGATC	1 cut(s)	407
AfaI	GTAC	2 cut(s)	145, 341
AfiI	CCNNNNNNNGG	2 cut(s)	179, 391
AgsI	TTSAA	4 cut(s)	40, 221, 278, 314
AhdI	GACNNNNNGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	2 cut(s)	287, 350
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	2 cut(s)	74, 381
AspS9I	GGNCC	2 cut(s)	170, 382
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	113, 349
AsuII	TTCGAA	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	185
BanI	GGYRCC	2 cut(s)	131, 182
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	2 cut(s)	155, 252
BccI	CCATC	2 cut(s)	172, 182
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	287, 350
BfaI	CTAG	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	104
BlpI	GCTNAGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	174, 385
Bme18I	GGWCC	1 cut(s)	170
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	170, 382
BmiI	GGNNCC	3 cut(s)	133, 184, 437
BmrFI	CCNGG	2 cut(s)	174, 385
BmsI	GCATC	2 cut(s)	116, 214
BpiI	GAAGAC	2 cut(s)	155, 252
Bpu1102I	GCTNAGC	1 cut(s)	286
Bpu14I	TTCGAA	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	2 cut(s)	287, 350
BsaJI	CCNNGG	3 cut(s)	71, 77, 173
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 391
Bse1I	ACTGG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	71, 77, 173
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	179, 391
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	185
BshFI	GGCC	2 cut(s)	76, 383
BshNI	GGYRCC	2 cut(s)	131, 182
BsiSI	CCGG	2 cut(s)	385, 416
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	179, 391
BsmAI	GTCTC	2 cut(s)	287, 350
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	76, 383
Bso31I	GGTCTC	2 cut(s)	287, 350
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	185, 287
Bsp143I	GATC	1 cut(s)	412
Bsp1720I	GCTNAGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	76, 383
BspCNI	CTCAG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	3 cut(s)	133, 184, 437
BspPI	GGATC	1 cut(s)	407
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	2 cut(s)	131, 182
BspTNI	GGTCTC	2 cut(s)	287, 350
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	71, 77, 173
BssMI	GATC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	310, 344
BstBI	TTCGAA	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	50, 286
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	2 cut(s)	287, 350
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	172, 383
BstSLI	GKGCMC	1 cut(s)	185
BstV2I	GAAGAC	2 cut(s)	155, 252
BstXI	CCANNNNNNTGG	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	76, 383
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	170, 382
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	144, 340
CviAII	CATG	2 cut(s)	353, 404
CviQI	GTAC	2 cut(s)	144, 340
DdeI	CTNAG	2 cut(s)	50, 286
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
DriI	GACNNNNNGTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	2 cut(s)	287, 350
Eco47I	GGWCC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	356, 407
FaiI	YATR	5 cut(s)	237, 354, 405, 433, 448
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	2 cut(s)	352, 403
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	76, 383
HapII	CCGG	2 cut(s)	385, 416
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	356, 407
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	385, 416
HphI	GGTGA	2 cut(s)	113, 349
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188III	TCNNGA	4 cut(s)	16, 92, 221, 404
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	4 cut(s)	13, 196, 257, 293
HpyCH4III	ACNGT	2 cut(s)	310, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	50, 286
Hsp92II	CATG	2 cut(s)	356, 407
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	2 cut(s)	266, 441
LpnPI	CCDG	7 cut(s)	76, 113, 159, 186, 228, 398, 429
LweI	GCATC	2 cut(s)	116, 214
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	3 cut(s)	155, 257, 272
MhlI	GDGCHC	2 cut(s)	185, 287
MnlI	CCTC	4 cut(s)	4, 25, 97, 374
MslI	CAYNNNNRTG	1 cut(s)	82
MspI	CCGG	2 cut(s)	385, 416
MspR9I	CCNGG	2 cut(s)	174, 385
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	2 cut(s)	356, 407
NlaIV	GGNNCC	3 cut(s)	133, 184, 437
NmuCI	GTSAC	1 cut(s)	355
NspV	TTCGAA	1 cut(s)	230
PagI	TCATGA	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	3 cut(s)	133, 184, 437
PspPI	GGNCC	2 cut(s)	170, 382
RsaI	GTAC	2 cut(s)	145, 341
RsaNI	GTAC	2 cut(s)	144, 340
RseI	CAYNNNNRTG	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	2 cut(s)	170, 382
ScrFI	CCNGG	2 cut(s)	174, 385
SduI	GDGCHC	2 cut(s)	185, 287
SetI	ASST	6 cut(s)	15, 45, 149, 175, 362, 366
SfaNI	GCATC	2 cut(s)	116, 214
SfuI	TTCGAA	1 cut(s)	230
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	82
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	172, 383
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	2 cut(s)	310, 344
TaqI	TCGA	3 cut(s)	230, 243, 411
TaqII	GACCGA	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	170
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.