Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

88993447 .. 88995644

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG680100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGTCCAAAGAAAGGTGGAAAGCTCCCAGTCGCAGCTTCTAAGAAGAAGCCGGAGAAGGTGGTGAACCCACTGTTCGAGAAGCGCCCGAAGCAGTTCGGGATCGGAGGGGCATTGCCTCCGAAGAGGGATCTGACCCGATTCGTCAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGCTCAAGGTCCCGCCAGCTCTCAATCAGTTCACCAAGACCCTTGATAAGAACCTCGCTACAAGCCTGTTCAAGATGCTCCTGAAGTACAGGCCTGAAGACAAAGCCGAGAAGAAGGAGCGTCTTTTGAAAAGGGCGCAGGCAGAGACTGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAACAGGTATTATTCTCTACCTTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

149

Amino Acids

17.12

Weight (kDa)

10.46

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	4 cut(s)	110, 138, 181, 194
AcuI	CTGAAG	3 cut(s)	302, 315, 369
AfaI	GTAC	2 cut(s)	287, 392
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	4 cut(s)	271, 328, 365, 422
AluBI	AGCT	3 cut(s)	25, 38, 218
AluI	AGCT	3 cut(s)	25, 38, 218
Alw26I	GTCTC	2 cut(s)	338, 401
AlwI	GGATC	4 cut(s)	110, 138, 181, 194
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	152, 290
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	87, 337
AspS9I	GGNCC	3 cut(s)	5, 153, 208
AsuHPI	GGTGA	3 cut(s)	76, 223, 400
AvaII	GGWCC	2 cut(s)	5, 208
BamHI	GGATCC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	338, 401
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme18I	GGWCC	2 cut(s)	5, 208
BmgT120I	GGNCC	3 cut(s)	5, 153, 208
BmiI	GGNNCC	3 cut(s)	6, 188, 210
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	176, 188
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	47
BshFI	GGCC	2 cut(s)	154, 292
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	338, 401
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	154, 292
Bso31I	GGTCTC	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	102, 130, 186
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	154, 292
BspLI	GGNNCC	3 cut(s)	6, 188, 210
BspPI	GGATC	4 cut(s)	110, 138, 181, 194
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	3 cut(s)	102, 130, 186
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	75, 361, 395
Bst6I	CTCTTC	2 cut(s)	119, 176
BstC8I	GCNNGC	2 cut(s)	216, 339
BstDEI	CTNAG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 337
BstKTI	GATC	3 cut(s)	105, 133, 189
BstMAI	GTCTC	2 cut(s)	338, 401
BstMBI	GATC	3 cut(s)	102, 130, 186
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	130, 186
BstYI	RGATCY	2 cut(s)	130, 186
BsuRI	GGCC	2 cut(s)	154, 292
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	216, 339
CaiI	CAGNNNCTG	1 cut(s)	347
CfoI	GCGC	2 cut(s)	87, 337
Cfr13I	GGNCC	3 cut(s)	5, 153, 208
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	286, 391
CviAII	CATG	1 cut(s)	404
CviQI	GTAC	2 cut(s)	286, 391
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	3 cut(s)	104, 132, 188
DpnII	GATC	3 cut(s)	102, 130, 186
Eam1104I	CTCTTC	2 cut(s)	119, 176
EarI	CTCTTC	2 cut(s)	119, 176
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	5, 208
Eco57I	CTGAAG	3 cut(s)	302, 315, 369
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	407
FaiI	YATR	1 cut(s)	405
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	1 cut(s)	403
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GlaI	GCGC	2 cut(s)	86, 336
GluI	GCNGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	154, 292
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	87, 337
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	2 cut(s)	85, 335
HinP1I	GCGC	2 cut(s)	85, 335
HinfI	GANTC	2 cut(s)	141, 169
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	76, 223, 400
Hpy166II	GTNNAC	2 cut(s)	67, 231
Hpy188I	TCNGA	5 cut(s)	107, 123, 135, 168, 174
Hpy188III	TCNNGA	4 cut(s)	79, 100, 271, 280
Hpy8I	GTNNAC	2 cut(s)	67, 231
HpyAV	CCTTC	3 cut(s)	52, 307, 344
HpyCH4III	ACNGT	3 cut(s)	75, 361, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	2 cut(s)	85, 335
Kzo9I	GATC	3 cut(s)	102, 130, 186
LmnI	GCTCC	3 cut(s)	30, 282, 316
LpnPI	CCDG	9 cut(s)	42, 66, 228, 274, 278, 293, 306, 323, 410
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	104, 132, 188
MboI	GATC	3 cut(s)	102, 130, 186
MboII	GAAGA	6 cut(s)	58, 136, 190, 193, 308, 322
MflI	RGATCY	2 cut(s)	130, 186
MnlI	CCTC	9 cut(s)	101, 120, 129, 168, 177, 192, 200, 263, 425
MroXI	GAANNNNTTC	1 cut(s)	95
MspI	CCGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	3 cut(s)	102, 130, 186
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	3 cut(s)	6, 188, 210
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	141, 169
PkrI	GCNGC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	6, 188, 210
PspPI	GGNCC	3 cut(s)	5, 153, 208
PspPPI	RGGWCCY	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	130, 186
RsaI	GTAC	2 cut(s)	287, 392
RsaNI	GTAC	2 cut(s)	286, 391
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	102, 130, 186
Sau96I	GGNCC	3 cut(s)	5, 153, 208
SfaNI	GCATC	1 cut(s)	264
SinI	GGWCC	2 cut(s)	5, 208
SmlI	CTYRAG	2 cut(s)	191, 203
SmoI	CTYRAG	2 cut(s)	191, 203
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	75, 361, 395
TaqI	TCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	141, 169
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	406
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	5, 208
XmnI	GAANNNNTTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.