Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003916.1

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

69991 .. 70362

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003916.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgcttctgaagtacaggcctgaagacaaagcagagaagaaggaacgtcttttgaaaagggctcaggcaaagactgaacgaaagactgttgaagccaagaagcctattgttgtgaagtatggtctcaaccatgtcacctacctcattgagcagcttgtggttatcgctcatgatgtcgatccaattgagttggttgtatggctccctgctttatgcagaaagatggagatcccctattgcattgtgaaggcaaagcacgtgtgggaggggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

90

Amino Acids

10.55

Weight (kDa)

9.42

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	173, 223
AcuI	CTGAAG	2 cut(s)	29, 42
AcvI	CACGTG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	55, 92
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	173, 223
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	2 cut(s)	177, 227
BsaI	GGTCTC	1 cut(s)	128
Bse8I	GATNNNNATC	2 cut(s)	177, 227
BseJI	GATNNNNATC	2 cut(s)	177, 227
BseMII	CTCAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	178, 228
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	203
BspPI	GGATC	2 cut(s)	173, 223
BspTNI	GGTCTC	1 cut(s)	128
BssMI	GATC	2 cut(s)	178, 228
Bst4CI	ACNGT	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	181, 231
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	178, 228
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	19
CciI	TCATGA	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	131, 170
CviJI	RGCY	6 cut(s)	19, 62, 95, 103, 154, 202
CviKI_1	RGCY	6 cut(s)	19, 62, 95, 103, 154, 202
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	180, 230
DpnII	GATC	2 cut(s)	178, 228
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	29, 42
Eco72I	CACGTG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	2 cut(s)	134, 173
FaiI	YATR	5 cut(s)	120, 132, 171, 199, 214
FatI	CATG	2 cut(s)	130, 169
Fnu4HI	GCNGC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	134, 173
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	34, 241
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	2 cut(s)	46, 258
HpyCH4V	TGCA	2 cut(s)	216, 240
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	46, 258
Hsp92II	CATG	2 cut(s)	134, 173
Kzo9I	GATC	2 cut(s)	178, 228
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	3 cut(s)	33, 50, 219
Lsp1109I	GCAGC	1 cut(s)	163
MaeII	ACGT	2 cut(s)	46, 258
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	180, 230
MboI	GATC	2 cut(s)	178, 228
MboII	GAAGA	2 cut(s)	35, 49
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	2 cut(s)	152, 259
MunI	CAATTG	1 cut(s)	183
NdeII	GATC	2 cut(s)	178, 228
NlaIII	CATG	2 cut(s)	134, 173
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	153
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	259
PspCI	CACGTG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	178, 228
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	5 cut(s)	49, 140, 144, 156, 261
SgeI	CNNG	9 cut(s)	28, 32, 77, 109, 143, 167, 182, 218, 269
Sse9I	AATT	1 cut(s)	183
SseBI	AGGCCT	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	2 cut(s)	49, 261
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.