Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011915.1

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

49512 .. 59019

Gene Structure 9508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011915.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgatagaggaggtcaagaaggcttacgaggaggctttgaagcttcatctaagaatgacaactagtcccccaaggccacaggaatggtatcaagaagccctagaggcaccgccacactttcaccaacagggcgtgccagcaccgcggggtgcagtcgttgggggcgttacccttgcttcgctggaagtaacagtggcggttgtgctcgcagtcggctcctggggagactgggactggaagtacggtcgccgggttgatctggtgccagtagaagtaccttattggaatcaagtctttagggacctgggatgggcactgatggtggatattggaagggcaacaagcctgttcaagatgcttctgaagtataggcctgaagacaaagcagagaaggagcgtcttttgaaaagggctcaggcagagattgaaggaaagactgttgaagccaagaagcctattgttgtgaagtacggtctcaaccatgtcacctacctcattgagcaggtattattctctaccttctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

175

Amino Acids

20.05

Weight (kDa)

7.9

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	2 cut(s)	106, 262
AccII	CGCG	1 cut(s)	145
AciI	CCGC	4 cut(s)	110, 143, 145, 197
AcuI	CTGAAG	2 cut(s)	383, 396
AfaI	GTAC	3 cut(s)	242, 276, 470
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	5 cut(s)	40, 352, 406, 428, 443
AhdI	GACNNNNNGTC	1 cut(s)	63
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	218, 303
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	219, 479
AoxI	GGCC	2 cut(s)	74, 371
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	113, 478
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	106, 262
BanII	GRGCYC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	2 cut(s)	303, 313
BciT130I	CCWGG	2 cut(s)	220, 305
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	2 cut(s)	219, 479
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	2 cut(s)	63, 101
BfuAI	ACCTGC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	220, 251, 305
Bme18I	GGWCC	1 cut(s)	301
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	4 cut(s)	108, 217, 264, 302
BmrFI	CCNGG	3 cut(s)	220, 251, 305
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	4 cut(s)	71, 143, 219, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	3 cut(s)	233, 239, 266
BseBI	CCWGG	2 cut(s)	220, 305
BseDI	CCNNGG	4 cut(s)	71, 143, 219, 304
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	233, 239, 266
BseRI	GAGGAG	2 cut(s)	23, 44
BseSI	GKGCMC	1 cut(s)	316
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	145
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	76, 373
BshNI	GGYRCC	2 cut(s)	106, 262
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	3 cut(s)	51, 245, 314
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	219, 479
BsmFI	GGGAC	3 cut(s)	51, 245, 314
BsnI	GGCC	2 cut(s)	76, 373
Bso31I	GGTCTC	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	207, 316, 415
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	4 cut(s)	110, 143, 145, 197
BspANI	GGCC	2 cut(s)	76, 373
BspCNI	CTCAG	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	108, 217, 264, 302
BspMI	ACCTGC	1 cut(s)	493
BspT107I	GGYRCC	2 cut(s)	106, 262
BspTNI	GGTCTC	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	233, 239, 266
BssECI	CCNNGG	4 cut(s)	71, 143, 219, 304
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	220, 305
Bst4CI	ACNGT	4 cut(s)	193, 245, 439, 473
BstC8I	GCNNGC	3 cut(s)	134, 138, 207
BstDEI	CTNAG	2 cut(s)	50, 414
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	2 cut(s)	219, 479
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 142
BstNI	CCWGG	2 cut(s)	220, 305
BstSCI	CCNGG	3 cut(s)	218, 249, 303
BstSLI	GKGCMC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	76, 373
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	2 cut(s)	198, 314
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	3 cut(s)	134, 138, 207
Cfr13I	GGNCC	1 cut(s)	301
Cfr42I	CCGCGG	1 cut(s)	146
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	241, 275, 469
CviAII	CATG	1 cut(s)	482
CviQI	GTAC	3 cut(s)	241, 275, 469
DdeI	CTNAG	2 cut(s)	50, 414
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DriI	GACNNNNNGTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	71
Eco147I	AGGCCT	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	415
Eco31I	GGTCTC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	301
Eco57I	CTGAAG	2 cut(s)	383, 396
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	218, 303
EcoT14I	CCWWGG	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	1 cut(s)	485
FaiI	YATR	2 cut(s)	369, 483
FaqI	GGGAC	3 cut(s)	51, 245, 314
FatI	CATG	1 cut(s)	481
FauI	CCCGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	415
FspBI	CTAG	2 cut(s)	63, 101
HaeIII	GGCC	2 cut(s)	76, 373
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	386
Hin1II	CATG	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	113, 478
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	3 cut(s)	16, 92, 352
HpyAV	CCTTC	4 cut(s)	13, 327, 385, 422
HpyCH4III	ACNGT	4 cut(s)	193, 245, 439, 473
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 142
HpyF3I	CTNAG	2 cut(s)	50, 414
Hsp92II	CATG	1 cut(s)	485
KspI	CCGCGG	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	221, 394
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	2 cut(s)	63, 101
MaeIII	GTNAC	3 cut(s)	166, 187, 484
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	389
MhlI	GDGCHC	3 cut(s)	207, 316, 415
MnlI	CCTC	5 cut(s)	4, 22, 25, 97, 503
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	3 cut(s)	220, 251, 305
MvaI	CCWGG	2 cut(s)	220, 305
MvnI	CGCG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	104, 142
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	4 cut(s)	108, 217, 264, 302
NmuCI	GTSAC	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	218, 303
PspGI	CCWGG	2 cut(s)	218, 303
PspN4I	GGNNCC	4 cut(s)	108, 217, 264, 302
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
RsaI	GTAC	3 cut(s)	242, 276, 470
RsaNI	GTAC	3 cut(s)	241, 275, 469
RseI	CAYNNNNRTG	1 cut(s)	82
SacII	CCGCGG	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	3 cut(s)	220, 251, 305
SduI	GDGCHC	3 cut(s)	207, 316, 415
SetI	ASST	8 cut(s)	15, 45, 280, 306, 491, 495, 507, 521
SfaNI	GCATC	1 cut(s)	345
Sfr303I	CCGCGG	1 cut(s)	146
SgrBI	CCGCGG	1 cut(s)	146
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	82
SpeI	ACTAGT	1 cut(s)	62
SseBI	AGGCCT	1 cut(s)	373
SsiI	CCGC	4 cut(s)	110, 143, 145, 197
SspMI	CTAG	2 cut(s)	63, 101
StuI	AGGCCT	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	218, 249, 303
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	4 cut(s)	193, 245, 439, 473
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	2 cut(s)	198, 321
TseFI	GTSAC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	2 cut(s)	198, 321
VpaK11BI	GGWCC	1 cut(s)	301
XspI	CTAG	2 cut(s)	63, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.