Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

24182805 .. 24183159

Gene Structure 355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG128700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGGTCCAAAGAAGGGTGGAAAAGCTCCAGTTGCTGCTTCTAAGAAGAAGCCGGAGAAGGTGGCCAACCCACTTTTCGAGAAGCGGCCGAAGCAGTTTGGGATCGGAGGGGCGTTGCCACCCAAGAGGGATCTGACCCGCTTCGTTAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAAAGGATCCTCAAGCAGAGGTTGAAGGTTCCTCCAGCTCTGAACCAGTTCACCAAGACCCTCGACAAAAACCTCGGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

87

Amino Acids

9.75

Weight (kDa)

11.53

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	85, 139
AclWI	GGATC	4 cut(s)	110, 138, 181, 194
AcoI	YGGCCR	2 cut(s)	63, 86
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	2 cut(s)	26, 218
AluI	AGCT	2 cut(s)	26, 218
AlwI	GGATC	4 cut(s)	110, 138, 181, 194
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	3 cut(s)	63, 86, 152
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	5, 153
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	5
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	36, 86
BlsI	GCNGC	2 cut(s)	37, 87
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 153
BmiI	GGNNCC	3 cut(s)	6, 188, 210
BpmI	CTGGAG	2 cut(s)	12, 198
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	156, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	29, 226
BseDI	CCNNGG	2 cut(s)	156, 253
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	2 cut(s)	29, 226
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	22
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	65, 88, 154
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	3 cut(s)	65, 88, 154
Bsp143I	GATC	3 cut(s)	102, 130, 186
BspACI	CCGC	2 cut(s)	85, 139
BspANI	GGCC	3 cut(s)	65, 88, 154
BspLI	GGNNCC	3 cut(s)	6, 188, 210
BspPI	GGATC	4 cut(s)	110, 138, 181, 194
BsrI	ACTGG	2 cut(s)	29, 226
BssECI	CCNNGG	2 cut(s)	156, 253
BssMI	GATC	3 cut(s)	102, 130, 186
BssT1I	CCWWGG	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	42
BstKTI	GATC	3 cut(s)	105, 133, 189
BstMBI	GATC	3 cut(s)	102, 130, 186
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 91
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	130, 186
BstYI	RGATCY	2 cut(s)	130, 186
BstZI	CGGCCG	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	65, 88, 154
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	5, 153
CviJI	RGCY	7 cut(s)	26, 52, 65, 88, 154, 161, 218
CviKI_1	RGCY	7 cut(s)	26, 52, 65, 88, 154, 161, 218
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	3 cut(s)	104, 132, 188
DpnII	GATC	3 cut(s)	102, 130, 186
EaeI	YGGCCR	2 cut(s)	63, 86
EagI	CGGCCG	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	5
Eco52I	CGGCCG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	36, 86
Fsp4HI	GCNGC	2 cut(s)	36, 86
GluI	GCNGC	2 cut(s)	36, 86
GsuI	CTGGAG	2 cut(s)	12, 198
HaeIII	GGCC	3 cut(s)	65, 88, 154
HapII	CCGG	1 cut(s)	53
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	5 cut(s)	107, 135, 168, 174, 222
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	3 cut(s)	7, 52, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 91
HpyF3I	CTNAG	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	102, 130, 186
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	4 cut(s)	42, 66, 228, 239
Lsp1109I	GCAGC	1 cut(s)	22
MalI	GATC	3 cut(s)	104, 132, 188
MboI	GATC	3 cut(s)	102, 130, 186
MboII	GAAGA	2 cut(s)	58, 190
MflI	RGATCY	2 cut(s)	130, 186
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MnlI	CCTC	8 cut(s)	101, 120, 168, 192, 200, 222, 251, 263
Mox20I	TGGCCA	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	32, 91
NdeII	GATC	3 cut(s)	102, 130, 186
NlaIV	GGNNCC	3 cut(s)	6, 188, 210
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	37, 87
PspN4I	GGNNCC	3 cut(s)	6, 188, 210
PspPI	GGNCC	2 cut(s)	5, 153
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	130, 186
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	36, 86
Sau3AI	GATC	3 cut(s)	102, 130, 186
Sau96I	GGNCC	2 cut(s)	5, 153
SetI	ASST	6 cut(s)	28, 63, 203, 210, 220, 255
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SsiI	CCGC	2 cut(s)	85, 139
StyI	CCWWGG	1 cut(s)	156
TaqI	TCGA	2 cut(s)	78, 243
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.