Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

71157384 .. 71158541

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0589500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATCGGAAAAACAAGAAAGAAGACCAAGAGGAAGGGGTTAATATTCTTGATGACTTAGCAGCTGGGATTAAGGGACCAGAAGAACCACCACCATCATCAAGTGCAGAATGTAGAATCTGTCAGGCAGAGGAGTTCATAGACAAACTGGAATCCCCTTGTCATTGCAGTGGTACTCTTAAGCCATATGAAGGTGGGTTTACCATAACAGTACCACCCCCGCCTACTCCGGAGGAGTTGGAAGCTCAAATGGCACGAGAAGAGGCTGAGAGGGAGGCCGAAATAGCGAGGGAAGAGGCTCGAAGAGCAACAGGGGTGGCATTAGCGGCTATATTGCCGGATTTGAATAACGCCGCTATTGGTGAAAGTCTTGTATGCCGGATTTCTTCTATCCTTTGTGCTGCTATGTACATTATTTTCATGGTGGCTCTTATAACCGGCCTCCTTGACTTTCGACCATCTTCACCTTCACCCCAGCCCCCAGCTCCGGATCAATTACCTCCTCAATTATTCATGAAAAATATTAGTGCACGTGCCTTGCGTTTCTGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

184

Amino Acids

20.09

Weight (kDa)

4.63

Isoelectric Point (pI)

72.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AccIII	TCCGGA	2 cut(s)	229, 487
AciI	CCGC	3 cut(s)	221, 326, 354
AclWI	GGATC	2 cut(s)	12, 498
AcvI	CACGTG	1 cut(s)	533
AfaI	GTAC	3 cut(s)	175, 213, 410
AfiI	CCNNNNNNNGG	2 cut(s)	191, 487
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	346
AluBI	AGCT	3 cut(s)	65, 245, 485
AluI	AGCT	3 cut(s)	65, 245, 485
Alw21I	GWGCWC	1 cut(s)	532
Alw44I	GTGCAC	1 cut(s)	528
AlwI	GGATC	2 cut(s)	12, 498
Aor13HI	TCCGGA	2 cut(s)	229, 487
AoxI	GGCC	2 cut(s)	276, 439
ApaLI	GTGCAC	1 cut(s)	528
ApeKI	GCWGC	2 cut(s)	62, 401
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	374, 456, 462
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	532
BauI	CACGAG	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	74, 388
BccI	CCATC	2 cut(s)	103, 466
BfrI	CTTAAG	1 cut(s)	179
BisI	GCNGC	4 cut(s)	63, 327, 354, 402
BlsI	GCNGC	4 cut(s)	64, 328, 355, 403
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	533
BsaWI	WCCGGW	2 cut(s)	229, 487
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 487
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	163
BseAI	TCCGGA	2 cut(s)	229, 487
BseLI	CCNNNNNNNGG	2 cut(s)	191, 487
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	3 cut(s)	146, 248, 492
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	74, 388
BseYI	CCCAGC	3 cut(s)	65, 474, 481
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	278, 441
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	5 cut(s)	230, 338, 379, 438, 488
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	191, 487
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	278, 441
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp13I	TCCGGA	2 cut(s)	229, 487
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	4, 490
BspACI	CCGC	3 cut(s)	221, 326, 354
BspANI	GGCC	2 cut(s)	278, 441
BspCNI	CTCAG	1 cut(s)	259
BspEI	TCCGGA	2 cut(s)	229, 487
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	12, 498
BspQI	GCTCTTC	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	163
BsrFI	RCCGGY	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	437
BssMI	GATC	2 cut(s)	4, 490
BssSI	CACGAG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	3 cut(s)	255, 288, 298
BstAFI	CTTAAG	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	58, 267
BstKTI	GATC	2 cut(s)	7, 493
BstMBI	GATC	2 cut(s)	4, 490
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 284, 305, 326, 547
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	2 cut(s)	74, 388
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	278, 441
BtsI	GCAGTG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	175
CciI	TCATGA	1 cut(s)	513
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	3 cut(s)	174, 212, 409
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	2 cut(s)	421, 514
CviQI	GTAC	3 cut(s)	174, 212, 409
DdeI	CTNAG	2 cut(s)	58, 267
DpnI	GATC	2 cut(s)	6, 492
DpnII	GATC	2 cut(s)	4, 490
Eam1104I	CTCTTC	3 cut(s)	255, 288, 298
EarI	CTCTTC	3 cut(s)	255, 288, 298
Eco47I	GGWCC	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	533
FaeI	CATG	2 cut(s)	424, 517
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	420, 513
FauI	CCCGC	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	63, 327, 354, 402
Fsp4HI	GCNGC	4 cut(s)	63, 327, 354, 402
GluI	GCNGC	4 cut(s)	63, 327, 354, 402
GsaI	CCCAGC	3 cut(s)	69, 478, 485
HaeIII	GGCC	2 cut(s)	278, 441
HapII	CCGG	5 cut(s)	230, 338, 379, 438, 488
Hin1II	CATG	2 cut(s)	424, 517
HinfI	GANTC	2 cut(s)	117, 152
HpaII	CCGG	5 cut(s)	230, 338, 379, 438, 488
HphI	GGTGA	3 cut(s)	374, 456, 462
Hpy166II	GTNNAC	2 cut(s)	201, 530
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	4 cut(s)	50, 230, 488, 514
Hpy8I	GTNNAC	2 cut(s)	201, 530
HpyAV	CCTTC	3 cut(s)	29, 185, 477
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	3 cut(s)	107, 168, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 284, 305, 326, 547
HpyF3I	CTNAG	2 cut(s)	58, 267
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	2 cut(s)	424, 517
Kpn2I	TCCGGA	2 cut(s)	229, 487
Kzo9I	GATC	2 cut(s)	4, 490
LguI	GCTCTTC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	2 cut(s)	74, 388
MaeII	ACGT	1 cut(s)	532
MalI	GATC	2 cut(s)	6, 492
MboI	GATC	2 cut(s)	4, 490
MboII	GAAGA	7 cut(s)	35, 95, 272, 305, 315, 378, 453
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	2 cut(s)	494, 506
MmeI	TCCRAC	1 cut(s)	219
MroI	TCCGGA	2 cut(s)	229, 487
MseI	TTAA	3 cut(s)	42, 72, 180
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	5 cut(s)	230, 338, 379, 438, 488
MwoI	GCNNNNNNNGC	5 cut(s)	251, 284, 305, 326, 547
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	2 cut(s)	4, 490
NlaIII	CATG	2 cut(s)	424, 517
NlaIV	GGNNCC	1 cut(s)	78
PagI	TCATGA	1 cut(s)	513
PciSI	GCTCTTC	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	117, 152
PkrI	GCNGC	4 cut(s)	64, 328, 355, 403
PmaCI	CACGTG	1 cut(s)	533
PmlI	CACGTG	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	533
PsiI	TTATAA	1 cut(s)	434
PspCI	CACGTG	1 cut(s)	533
PspFI	CCCAGC	3 cut(s)	65, 474, 481
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	175, 213, 410
RsaNI	GTAC	3 cut(s)	174, 212, 409
RseI	CAYNNNNRTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	42, 72, 180
SatI	GCNGC	4 cut(s)	63, 327, 354, 402
Sau3AI	GATC	2 cut(s)	4, 490
Sau96I	GGNCC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	7 cut(s)	67, 196, 247, 469, 487, 502, 535
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	494, 506
SsiI	CCGC	3 cut(s)	221, 326, 354
SspI	AATATT	2 cut(s)	46, 523
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	301, 454
TasI	AATT	2 cut(s)	494, 506
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	2 cut(s)	329, 356
TfiI	GAWTC	2 cut(s)	117, 152
Tru1I	TTAA	3 cut(s)	42, 72, 180
Tru9I	TTAA	3 cut(s)	42, 72, 180
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	2 cut(s)	62, 401
TspDTI	ATGAA	5 cut(s)	127, 204, 409, 502, 530
TspRI	CASTG	1 cut(s)	175
Vha464I	CTTAAG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.