Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

546214 .. 548019

Gene Structure 1806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1007800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCCCCAAAAGAGGCGTAAAAGCTCCAGTCGCAGCTTCCAAGAAGAAGACGGACAAGGTTGTAAACCCGCTGTTCGAGAAGCGCCCAAAGCAGTTCGGTATCGGAGGGGCATTGCCACCGAAGAGGGATCTGACCCGGTTCGTGAAATGGCCCAAGGTGGTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCTCCAGCTTTGAACCAGTTCACCAAGACCCTCGATAAGAACCTCGCCACCAGCCTGTTCAAGATGCTTCTCAAGTACAGGCCTGAGGACAAAGCTGCAAAGAAGGAGCGCCTTTTGAAAAGGGCCCAGGCCGAGACCGAAGGCAAATCTGTTGAGGCCAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCATGTGACCTACCTCATAGAGCAGAACAAGGCCCAGCTTGTTGTTATCGCACACGATGTTGACCCAATAGAGTTGGTTGTCTGGCTTCCTGCTTTATGCAGGAAGATGGAAGTCCCATATTGCATTGTGAAGGGCAAAGCACGCTTGGGATCTATTGTCCACAAGAAAACTGCGTCAGTTTTGTGCTTGACAACAGTCAAGAATGAGGATAAGTTGGAGTTCAGCAAGGTCTTGGAGGCAATCAAGGCCAACTTCAATGACAAGTATGAGGAGTACAGGAAAAAGTGGGGTGGCGGCATCATGGGTTCCAAATCCCAGGCAAAAACTAGGGCGAAGGAGAAGCTCCTTGCGAAAGAAGCTGCGCAAAGGCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

260

Amino Acids

29.38

Weight (kDa)

10.22

Isoelectric Point (pI)

29.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	118 - 206	5.5e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	765
AciI	CCGC	2 cut(s)	71, 696
AclWI	GGATC	4 cut(s)	138, 181, 194, 559
AfaI	GTAC	2 cut(s)	287, 677
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	5 cut(s)	205, 223, 271, 328, 658
AjnI	CCWGG	2 cut(s)	336, 717
AluBI	AGCT	7 cut(s)	26, 38, 218, 305, 439, 745, 761
AluI	AGCT	7 cut(s)	26, 38, 218, 305, 439, 745, 761
Alw26I	GTCTC	2 cut(s)	338, 401
AlwI	GGATC	4 cut(s)	138, 181, 194, 559
AoxI	GGCC	8 cut(s)	3, 152, 290, 333, 339, 366, 432, 648
ApaI	GGGCCC	1 cut(s)	337
ApeKI	GCWGC	3 cut(s)	35, 305, 761
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	3 cut(s)	87, 321, 766
AspS9I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	47, 292, 748
BccI	CCATC	1 cut(s)	502
BciT130I	CCWGG	2 cut(s)	338, 719
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	338, 401
BfaI	CTAG	1 cut(s)	729
BfoI	RGCGCY	2 cut(s)	88, 322
BisI	GCNGC	4 cut(s)	36, 306, 697, 762
BlsI	GCNGC	4 cut(s)	37, 307, 698, 763
Bme1390I	CCNGG	3 cut(s)	139, 338, 719
BmgT120I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
BmiI	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
BmrFI	CCNGG	3 cut(s)	139, 338, 719
BmsI	GCATC	2 cut(s)	264, 708
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	12, 198
BpuEI	CTTGAG	2 cut(s)	176, 266
BpuMI	CCSGG	1 cut(s)	139
BsaI	GGTCTC	2 cut(s)	338, 401
BsaJI	CCNNGG	3 cut(s)	156, 336, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	29, 226
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	338, 719
BseDI	CCNNGG	3 cut(s)	156, 336, 717
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	29, 226
BseRI	GAGGAG	1 cut(s)	686
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	47, 292, 748
BseYI	CCCAGC	1 cut(s)	435
BshFI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	2 cut(s)	338, 401
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
Bso31I	GGTCTC	2 cut(s)	338, 401
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	130, 186, 551
BspACI	CCGC	2 cut(s)	71, 696
BspANI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
BspPI	GGATC	4 cut(s)	138, 181, 194, 559
BspTNI	GGTCTC	2 cut(s)	338, 401
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	29, 226
BssECI	CCNNGG	3 cut(s)	156, 336, 717
BssMI	GATC	3 cut(s)	130, 186, 551
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	338, 719
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	2 cut(s)	119, 176
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	1 cut(s)	294
BstH2I	RGCGCY	2 cut(s)	88, 322
BstHHI	GCGC	3 cut(s)	87, 321, 766
BstKTI	GATC	3 cut(s)	133, 189, 554
BstMAI	GTCTC	2 cut(s)	338, 401
BstMBI	GATC	3 cut(s)	130, 186, 551
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
BstNI	CCWGG	2 cut(s)	338, 719
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSCI	CCNGG	3 cut(s)	137, 336, 717
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	47, 292, 748
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	3 cut(s)	130, 186, 551
BstYI	RGATCY	3 cut(s)	130, 186, 551
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
Cac8I	GCNNGC	1 cut(s)	544
CfoI	GCGC	3 cut(s)	87, 321, 766
Cfr13I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	286, 676
CviAII	CATG	2 cut(s)	404, 703
CviQI	GTAC	2 cut(s)	286, 676
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	3 cut(s)	132, 188, 553
DpnII	GATC	3 cut(s)	130, 186, 551
Eam1104I	CTCTTC	2 cut(s)	119, 176
EarI	CTCTTC	2 cut(s)	119, 176
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	2 cut(s)	338, 401
Eco81I	CCTNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	336, 717
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	407, 706
FaiI	YATR	7 cut(s)	393, 405, 419, 499, 520, 669, 704
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	2 cut(s)	403, 702
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	4 cut(s)	36, 306, 697, 762
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	4 cut(s)	36, 306, 697, 762
FspBI	CTAG	1 cut(s)	729
FspI	TGCGCA	1 cut(s)	765
GlaI	GCGC	3 cut(s)	86, 320, 765
GluI	GCNGC	4 cut(s)	36, 306, 697, 762
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	2 cut(s)	12, 198
HaeII	RGCGCY	2 cut(s)	88, 322
HaeIII	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
HapII	CCGG	1 cut(s)	139
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	3 cut(s)	87, 321, 766
Hin1II	CATG	2 cut(s)	407, 706
Hin6I	GCGC	3 cut(s)	85, 319, 764
HinP1I	GCGC	3 cut(s)	85, 319, 764
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	4 cut(s)	67, 231, 463, 562
Hpy188I	TCNGA	4 cut(s)	107, 135, 168, 174
Hpy188III	TCNNGA	4 cut(s)	79, 145, 271, 601
Hpy8I	GTNNAC	4 cut(s)	67, 231, 463, 562
HpyAV	CCTTC	5 cut(s)	199, 307, 344, 526, 730
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4V	TGCA	3 cut(s)	308, 501, 525
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	407, 706
HspAI	GCGC	3 cut(s)	85, 319, 764
Kzo9I	GATC	3 cut(s)	130, 186, 551
LmnI	GCTCC	3 cut(s)	31, 316, 750
Lsp1109I	GCAGC	3 cut(s)	47, 292, 748
LweI	GCATC	2 cut(s)	264, 708
MaeI	CTAG	1 cut(s)	729
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	132, 188, 553
MboI	GATC	3 cut(s)	130, 186, 551
MboII	GAAGA	6 cut(s)	58, 61, 136, 190, 193, 517
MflI	RGATCY	3 cut(s)	130, 186, 551
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	1 cut(s)	775
MmeI	TCCRAC	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	2 cut(s)	774, 778
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	3 cut(s)	139, 338, 719
MvaI	CCWGG	2 cut(s)	338, 719
MwoI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	130, 186, 551
NlaIII	CATG	2 cut(s)	407, 706
NlaIV	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	765
PacI	TTAATTAA	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	4 cut(s)	37, 307, 698, 763
PshAI	GACNNNNGTC	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	336, 717
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	2 cut(s)	336, 717
PspN4I	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	5 cut(s)	4, 153, 333, 334, 433
PsuI	RGATCY	3 cut(s)	130, 186, 551
RsaI	GTAC	2 cut(s)	287, 677
RsaNI	GTAC	2 cut(s)	286, 676
SaqAI	TTAA	2 cut(s)	774, 778
SatI	GCNGC	4 cut(s)	36, 306, 697, 762
Sau3AI	GATC	3 cut(s)	130, 186, 551
Sau96I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
ScrFI	CCNGG	3 cut(s)	139, 338, 719
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	264, 708
SmlI	CTYRAG	2 cut(s)	191, 281
SmoI	CTYRAG	2 cut(s)	191, 281
Sse9I	AATT	1 cut(s)	775
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	71, 696
SspMI	CTAG	1 cut(s)	729
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	137, 336, 717
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	598
TaqI	TCGA	2 cut(s)	78, 243
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	775
TatI	WGTACW	2 cut(s)	285, 675
TauI	GCSGC	1 cut(s)	699
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	2 cut(s)	774, 778
Tru9I	TTAA	2 cut(s)	774, 778
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	35, 305, 761
Tsp45I	GTSAC	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.