Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000334.1

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

307687 .. 308055

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000334.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgcttctgaagtataggcctgaagacaaagcagagaaggagcgtcttttgaaaagggctcaggcagagactgaaggaaagactgttgaagccaagaagcctattgttgtgaagtacggtctcaaccatgtcacctacctcattgagcagcttgtggttatcgctcatgatgtcgatctaattgagttggttgtatggctccatgctttatgcagaatgatggagatcccctattgcattgtgaaggcaaagcacgtgtgggagcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

89

Amino Acids

10.48

Weight (kDa)

8.57

Isoelectric Point (pI)

23.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	265
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	220
AcuI	CTGAAG	3 cut(s)	29, 42, 93
AcvI	CACGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	52, 89
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	62, 125
AlwI	GGATC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	61
BbrPI	CACGTG	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	62, 125
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	256
BsaBI	GATNNNNATC	2 cut(s)	174, 224
BsaI	GGTCTC	1 cut(s)	125
Bse8I	GATNNNNATC	2 cut(s)	174, 224
BseJI	GATNNNNATC	2 cut(s)	174, 224
BseMII	CTCAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	62, 125
BsnI	GGCC	1 cut(s)	19
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	175, 225
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	265
BssMI	GATC	2 cut(s)	175, 225
Bst4CI	ACNGT	2 cut(s)	85, 119
BstBAI	YACGTR	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	178, 228
BstMAI	GTCTC	2 cut(s)	62, 125
BstMBI	GATC	2 cut(s)	175, 225
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	166
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	128, 167, 203
CviJI	RGCY	6 cut(s)	19, 59, 92, 100, 151, 199
CviKI_1	RGCY	6 cut(s)	19, 59, 92, 100, 151, 199
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	2 cut(s)	177, 227
DpnII	GATC	2 cut(s)	175, 225
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	125
Eco57I	CTGAAG	3 cut(s)	29, 42, 93
Eco72I	CACGTG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	3 cut(s)	131, 170, 206
FaiI	YATR	6 cut(s)	15, 129, 168, 196, 204, 211
FatI	CATG	3 cut(s)	127, 166, 202
Fnu4HI	GCNGC	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	131, 170, 206
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	31, 68, 238
HpyCH4III	ACNGT	2 cut(s)	85, 119
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	213, 237
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	131, 170, 206
Kzo9I	GATC	2 cut(s)	175, 225
LmnI	GCTCC	3 cut(s)	40, 204, 262
LpnPI	CCDG	2 cut(s)	33, 47
Lsp1109I	GCAGC	1 cut(s)	160
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	177, 227
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	2 cut(s)	175, 225
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	1 cut(s)	180
MnlI	CCTC	1 cut(s)	149
NdeII	GATC	2 cut(s)	175, 225
NlaIII	CATG	3 cut(s)	131, 170, 206
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	150
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
Ppu21I	YACGTR	1 cut(s)	256
PspCI	CACGTG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	175, 225
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	4 cut(s)	137, 141, 153, 258
SgeI	CNNG	8 cut(s)	32, 74, 106, 140, 164, 179, 215, 266
Sse9I	AATT	1 cut(s)	180
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	265
StuI	AGGCCT	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	85, 119
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.