Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

26909887 .. 26912140

Gene Structure 2254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G309200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTCCGAAAAGAGGTGTCAAAGCTCCAGTCGCAGCGAAGAAGAAGACGGAGAAAGTGGTGAACCCACTGTTCGAGAAACGTCCCAAGCAGTTTGGGATTGGAGGGGCATTGCCTCCAAAGAGAGATCTTACCCGTTTCGTGAAATGGCCCAAGGTTGTTCAAGTTCAGAGGAAGAAAAGGATCCTGAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAGACCCTCGACAAGAACCTGGCTACGAGTCTGTTCAAGATGCTTCTCAAGTATAGGCCAGAAGACAAAGCAGCAAAGAAGGAGCGCCTTTTGAAAAGGGCACAAGCAGAGTCTGAGGGAAAAACTGTTGAAGCCAAAAAACCTATTGTTGTGAAATATGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAAGCCCAGCTTGTTGTTATCGCACATGATGTTGACCCAATAGAGTTGGTGGTTTGGCTGCCTGCATTATGTAGGAAGATGGAAATCCCATATTGCATAGTGAAGGGCAAAGCACGCTTGGGATCGATTGTCCATAAGAAAACTGCATCAGTTTTGTGCTTGACAACAGTCAAGAATGAAGATAAATTGGAGTTCAGCAAGGTGCTAGAGGCAATCAAGGCCAACTTCAATGACAAGTATGATGAGTACAGGAAAAAGTGGGGTGGCGGCATCATGGGTTCCAAATCCCAGGCCAAAACTAGGGCGAAAGAGAGGCTCCTTGCAAAAGAAGCTGCTCAAAGGATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

259

Amino Acids

29.33

Weight (kDa)

10.25

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	693
AclWI	GGATC	3 cut(s)	178, 191, 556
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	674
AfiI	CCNNNNNNNGG	2 cut(s)	14, 726
AgsI	TTSAA	7 cut(s)	164, 202, 220, 268, 325, 362, 655
AjnI	CCWGG	2 cut(s)	249, 714
AluBI	AGCT	4 cut(s)	26, 215, 436, 758
AluI	AGCT	4 cut(s)	26, 215, 436, 758
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	178, 191, 556
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	4 cut(s)	149, 287, 645, 717
ApeKI	GCWGC	4 cut(s)	35, 302, 484, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	73, 220, 397
BaeGI	GKGCMC	1 cut(s)	334
BamHI	GGATCC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	53, 300
BbvI	GCAGC	4 cut(s)	47, 314, 471, 745
BccI	CCATC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	251, 716
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	2 cut(s)	632, 726
BfoI	RGCGCY	1 cut(s)	319
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	5 cut(s)	36, 303, 485, 694, 759
BlsI	GCNGC	5 cut(s)	37, 304, 486, 695, 760
Bme1390I	CCNGG	2 cut(s)	251, 716
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	5 cut(s)	6, 185, 207, 706, 743
BmrFI	CCNGG	2 cut(s)	251, 716
BmsI	GCATC	3 cut(s)	261, 581, 705
BoxI	GACNNNNGTC	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	53, 300
BpmI	CTGGAG	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	153, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 726
Bse1I	ACTGG	2 cut(s)	29, 223
Bse3DI	GCAATG	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	2 cut(s)	251, 716
BseCI	ATCGAT	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	153, 714
BseGI	GGATG	1 cut(s)	774
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	2 cut(s)	14, 726
BseMI	GCAATG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	29, 223
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	47, 314, 471, 745
BseYI	CCCAGC	1 cut(s)	432
BshFI	GGCC	4 cut(s)	151, 289, 647, 719
BshVI	ATCGAT	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	14, 726
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	4 cut(s)	151, 289, 647, 719
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	127, 183, 548
BspACI	CCGC	1 cut(s)	693
BspANI	GGCC	4 cut(s)	151, 289, 647, 719
BspCNI	CTCAG	1 cut(s)	337
BspDI	ATCGAT	1 cut(s)	551
BspLI	GGNNCC	5 cut(s)	6, 185, 207, 706, 743
BspPI	GGATC	3 cut(s)	178, 191, 556
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	29, 223
BssECI	CCNNGG	2 cut(s)	153, 714
BssMI	GATC	3 cut(s)	127, 183, 548
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	251, 716
Bst4CI	ACNGT	3 cut(s)	72, 358, 595
BstC8I	GCNNGC	2 cut(s)	489, 541
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	774
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	130, 186, 551
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	127, 183, 548
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 540, 644, 755
BstNI	CCWGG	2 cut(s)	251, 716
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	249, 714
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	4 cut(s)	47, 314, 471, 745
BstV2I	GAAGAC	2 cut(s)	53, 300
BstX2I	RGATCY	2 cut(s)	127, 183
BstYI	RGATCY	2 cut(s)	127, 183
Bsu15I	ATCGAT	1 cut(s)	551
BsuRI	GGCC	4 cut(s)	151, 289, 647, 719
BsuTUI	ATCGAT	1 cut(s)	551
BtsCI	GGATG	1 cut(s)	774
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	489, 541
CaiI	CAGNNNCTG	1 cut(s)	344
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	150
ClaI	ATCGAT	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	673
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	3 cut(s)	401, 452, 700
CviQI	GTAC	1 cut(s)	673
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	129, 185, 550
DpnII	GATC	3 cut(s)	127, 183, 548
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	249, 714
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	3 cut(s)	404, 455, 703
FalI	AAGNNNNNCTT	4 cut(s)	420, 452, 635, 667
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	3 cut(s)	400, 451, 699
Fnu4HI	GCNGC	5 cut(s)	36, 303, 485, 694, 759
Fsp4HI	GCNGC	5 cut(s)	36, 303, 485, 694, 759
FspBI	CTAG	2 cut(s)	632, 726
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	5 cut(s)	36, 303, 485, 694, 759
GsaI	CCCAGC	1 cut(s)	436
GsuI	CTGGAG	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	4 cut(s)	151, 289, 647, 719
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	404, 455, 703
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	259, 341
HphI	GGTGA	3 cut(s)	73, 220, 397
Hpy166II	GTNNAC	3 cut(s)	64, 228, 460
Hpy188I	TCNGA	3 cut(s)	9, 171, 346
Hpy188III	TCNNGA	5 cut(s)	76, 142, 187, 268, 598
Hpy8I	GTNNAC	3 cut(s)	64, 228, 460
HpyAV	CCTTC	3 cut(s)	196, 304, 523
HpyCH4III	ACNGT	3 cut(s)	72, 358, 595
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	4 cut(s)	491, 522, 572, 749
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 540, 644, 755
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	404, 455, 703
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	127, 183, 548
LmnI	GCTCC	4 cut(s)	10, 31, 313, 747
Lsp1109I	GCAGC	4 cut(s)	47, 314, 471, 745
LweI	GCATC	3 cut(s)	261, 581, 705
MaeI	CTAG	2 cut(s)	632, 726
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	129, 185, 550
MboI	GATC	3 cut(s)	127, 183, 548
MboII	GAAGA	7 cut(s)	52, 55, 58, 187, 305, 514, 617
MflI	RGATCY	2 cut(s)	127, 183
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	611, 772
MlyI	GAGTC	2 cut(s)	268, 350
MroXI	GAANNNNTTC	1 cut(s)	224
MseI	TTAA	1 cut(s)	775
MspR9I	CCNGG	2 cut(s)	251, 716
MvaI	CCWGG	2 cut(s)	251, 716
MwoI	GCNNNNNNNGC	4 cut(s)	32, 540, 644, 755
NdeII	GATC	3 cut(s)	127, 183, 548
NlaIII	CATG	3 cut(s)	404, 455, 703
NlaIV	GGNNCC	5 cut(s)	6, 185, 207, 706, 743
NmuCI	GTSAC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	37, 304, 486, 695, 760
PleI	GAGTC	2 cut(s)	267, 349
PpsI	GAGTC	2 cut(s)	267, 349
PshAI	GACNNNNGTC	1 cut(s)	593
Psp6I	CCWGG	2 cut(s)	249, 714
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	2 cut(s)	249, 714
PspN4I	GGNNCC	5 cut(s)	6, 185, 207, 706, 743
PspPI	GGNCC	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	127, 183
RsaI	GTAC	1 cut(s)	674
RsaNI	GTAC	1 cut(s)	673
SaqAI	TTAA	1 cut(s)	775
SatI	GCNGC	5 cut(s)	36, 303, 485, 694, 759
Sau3AI	GATC	3 cut(s)	127, 183, 548
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	2 cut(s)	268, 350
ScrFI	CCNGG	2 cut(s)	251, 716
SduI	GDGCHC	1 cut(s)	334
SfaNI	GCATC	3 cut(s)	261, 581, 705
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	611, 772
SsiI	CCGC	1 cut(s)	693
SspMI	CTAG	2 cut(s)	632, 726
StyD4I	CCNGG	2 cut(s)	249, 714
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	72, 358, 595
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	3 cut(s)	75, 240, 551
TasI	AATT	2 cut(s)	611, 772
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	1 cut(s)	696
Tru1I	TTAA	1 cut(s)	775
Tru9I	TTAA	1 cut(s)	775
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	4 cut(s)	35, 302, 484, 758
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	618
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	224
XspI	CTAG	2 cut(s)	632, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.