Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

28281523 .. 28284392

Gene Structure 2870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1137700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCCCGAAGAGAGGTGTGAAACCGGCAGCACTTGCCAAAAAGAAAACTGAGAAGGTTGTGAACCCACTATTTGAGAAGCGTACTAAGCAGTTTGGTATCGGTGGGGCTTTGCCTCCTAAGAGAGATCTGCACCGATTTGTGAAATGGCCCAAGGTTGTTCGTATCCAGAGGAAGAAGAGGATCCTTAAGCAACGTTTGAAGGTCCCACCAGCACTTAACCAGTTCACCAAGACTCTGGACAAGAACCTTGCTACAAGTCTCTTCAAGTTGCTTCTGAAGTACAGGCCCGAAGACAAAGCTGCAAAGAGGGAACGTCTTCTGAAAAGAGCTCAAGAGGAATCTGAAGGAAAAACTGTTGAGGCAAAGAAGCCTATTGTTCTGAAATATGGACTTAACCATGTCACCTACCTGATTGAGCAGAACAAGGCCCAGCTTGTTGTTATTGCTCACGATGTGGACCCTATCGAGTTGGTTGTATGGCTTCCTGCCTTGTGTAGGAAGATGGAGATCCCATACTGCATTGTGAAGGGAAAATCCCGTCTTGGAGCGCTTCTCCACAAGAAAACTGCCGCTGCACTTTGTTTGACCACCGTTAAGAATGAGGATAAGCTTGAGTTCAGCAAAATTCTGGAGGCTATCAAGGCCAACTTCAACGATAAGTACGAGGAGTTGAGAAAGAAGTGGGGAGGCGGTATCATGGGTGCCAAATCACAGGCCAAGACCAAGGCGAAGGAGAAGCTCTTAGCAAAGGAAGCCGCACAGAGGTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

259

Amino Acids

29.37

Weight (kDa)

10.25

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	116 - 204	4.3e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	704
AciI	CCGC	3 cut(s)	573, 693, 759
AclI	AACGTT	1 cut(s)	196
AclWI	GGATC	3 cut(s)	178, 191, 505
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	299, 366
AdeI	CACNNNGTG	1 cut(s)	457
AfaI	GTAC	3 cut(s)	85, 284, 665
AfeI	AGCGCT	1 cut(s)	552
AfiI	CCNNNNNNNGG	3 cut(s)	14, 498, 765
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	202, 268, 655, 772
AluBI	AGCT	5 cut(s)	302, 332, 436, 613, 742
AluI	AGCT	5 cut(s)	302, 332, 436, 613, 742
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	3 cut(s)	178, 191, 505
Aor51HI	AGCGCT	1 cut(s)	552
AoxI	GGCC	6 cut(s)	3, 149, 287, 429, 645, 717
ApeKI	GCWGC	3 cut(s)	29, 302, 575
ApoI	RAATTY	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	6 cut(s)	4, 150, 205, 288, 430, 460
AsuHPI	GGTGA	2 cut(s)	220, 397
AvaII	GGWCC	2 cut(s)	205, 460
BamHI	GGATCC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	704
BanII	GRGCYC	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	300, 311
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	41, 289, 562
BccI	CCATC	1 cut(s)	499
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	554
BfrI	CTTAAG	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	5 cut(s)	30, 303, 573, 576, 759
BlsI	GCNGC	5 cut(s)	31, 304, 574, 577, 760
Bme18I	GGWCC	2 cut(s)	205, 460
BmgT120I	GGNCC	6 cut(s)	4, 150, 205, 288, 430, 460
BmiI	GGNNCC	5 cut(s)	6, 185, 207, 462, 706
BpiI	GAAGAC	2 cut(s)	300, 311
BplI	GAGNNNNNCTC	2 cut(s)	540, 572
BpmI	CTGGAG	1 cut(s)	653
BpuEI	CTTGAG	2 cut(s)	318, 635
BsaBI	GATNNNNATC	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	153, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 498, 765
Bse118I	RCCGGY	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	509
BseDI	CCNNGG	2 cut(s)	153, 726
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	3 cut(s)	14, 498, 765
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	3 cut(s)	41, 289, 562
BseYI	CCCAGC	1 cut(s)	432
BsgI	GTGCAG	2 cut(s)	116, 561
BshFI	GGCC	6 cut(s)	5, 151, 289, 431, 647, 719
BshNI	GGYRCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	14, 498, 765
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	6 cut(s)	5, 151, 289, 431, 647, 719
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	127, 183, 510
BspACI	CCGC	3 cut(s)	573, 693, 759
BspANI	GGCC	6 cut(s)	5, 151, 289, 431, 647, 719
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	5 cut(s)	6, 185, 207, 462, 706
BspPI	GGATC	3 cut(s)	178, 191, 505
BspT107I	GGYRCC	1 cut(s)	704
BspTI	CTTAAG	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	153, 726
BssMI	GATC	3 cut(s)	127, 183, 510
BssT1I	CCWWGG	2 cut(s)	153, 726
Bst4CI	ACNGT	2 cut(s)	358, 595
Bst6I	CTCTTC	3 cut(s)	5, 173, 269
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstDEI	CTNAG	4 cut(s)	51, 87, 120, 745
BstENI	CCTNNNNNAGG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	3 cut(s)	130, 186, 513
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	127, 183, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 88, 644, 755
BstV1I	GCAGC	3 cut(s)	41, 289, 562
BstV2I	GAAGAC	2 cut(s)	300, 311
BstX2I	RGATCY	3 cut(s)	127, 183, 510
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstYI	RGATCY	3 cut(s)	127, 183, 510
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	6 cut(s)	5, 151, 289, 431, 647, 719
CfoI	GCGC	1 cut(s)	553
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	6 cut(s)	4, 150, 205, 288, 430, 460
Csp6I	GTAC	3 cut(s)	84, 283, 664
CviAII	CATG	2 cut(s)	401, 700
CviQI	GTAC	3 cut(s)	84, 283, 664
DdeI	CTNAG	4 cut(s)	51, 87, 120, 745
DpnI	GATC	3 cut(s)	129, 185, 512
DpnII	GATC	3 cut(s)	127, 183, 510
DraIII	CACNNNGTG	1 cut(s)	457
Eam1104I	CTCTTC	3 cut(s)	5, 173, 269
EarI	CTCTTC	3 cut(s)	5, 173, 269
Ecl136II	GAGCTC	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	153, 726
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	205, 460
Eco47III	AGCGCT	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	299, 366
EcoICRI	GAGCTC	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	153, 726
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	2 cut(s)	153, 726
FaeI	CATG	2 cut(s)	404, 703
FaiI	YATR	5 cut(s)	390, 402, 481, 517, 701
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	400, 699
Fnu4HI	GCNGC	5 cut(s)	30, 303, 573, 576, 759
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	5 cut(s)	30, 303, 573, 576, 759
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	5 cut(s)	30, 303, 573, 576, 759
GsaI	CCCAGC	1 cut(s)	436
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	6 cut(s)	5, 151, 289, 431, 647, 719
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	2 cut(s)	404, 703
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	2 cut(s)	235, 341
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	220, 397
Hpy166II	GTNNAC	3 cut(s)	64, 228, 460
Hpy188I	TCNGA	4 cut(s)	279, 324, 346, 384
Hpy188III	TCNNGA	5 cut(s)	169, 239, 335, 452, 632
Hpy8I	GTNNAC	3 cut(s)	64, 228, 460
HpyAV	CCTTC	5 cut(s)	49, 196, 341, 523, 727
HpyCH4III	ACNGT	2 cut(s)	358, 595
HpyCH4IV	ACGT	2 cut(s)	196, 316
HpyCH4V	TGCA	4 cut(s)	133, 305, 522, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 88, 644, 755
HpyF3I	CTNAG	4 cut(s)	51, 87, 120, 745
HpySE526I	ACGT	2 cut(s)	196, 316
Hsp92II	CATG	2 cut(s)	404, 703
HspAI	GCGC	1 cut(s)	551
Kzo9I	GATC	3 cut(s)	127, 183, 510
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	3 cut(s)	41, 289, 562
MaeII	ACGT	2 cut(s)	196, 316
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	129, 185, 512
MboI	GATC	3 cut(s)	127, 183, 510
MboII	GAAGA	7 cut(s)	22, 187, 190, 256, 305, 311, 514
MflI	RGATCY	3 cut(s)	127, 183, 510
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	318
MseI	TTAA	4 cut(s)	189, 219, 396, 597
MspA1I	CMGCKG	1 cut(s)	575
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	35, 88, 644, 755
NdeII	GATC	3 cut(s)	127, 183, 510
NlaIII	CATG	2 cut(s)	404, 703
NlaIV	GGNNCC	5 cut(s)	6, 185, 207, 462, 706
NmuCI	GTSAC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	31, 304, 574, 577, 760
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	432
PspN4I	GGNNCC	5 cut(s)	6, 185, 207, 462, 706
PspPI	GGNCC	6 cut(s)	4, 150, 205, 288, 430, 460
PspPPI	RGGWCCY	1 cut(s)	205
PsuI	RGATCY	3 cut(s)	127, 183, 510
RsaI	GTAC	3 cut(s)	85, 284, 665
RsaNI	GTAC	3 cut(s)	84, 283, 664
SacI	GAGCTC	1 cut(s)	334
SaqAI	TTAA	4 cut(s)	189, 219, 396, 597
SatI	GCNGC	5 cut(s)	30, 303, 573, 576, 759
Sau3AI	GATC	3 cut(s)	127, 183, 510
Sau96I	GGNCC	6 cut(s)	4, 150, 205, 288, 430, 460
SchI	GAGTC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	334
SinI	GGWCC	2 cut(s)	205, 460
SmlI	CTYRAG	3 cut(s)	188, 333, 614
SmoI	CTYRAG	3 cut(s)	188, 333, 614
Sse9I	AATT	1 cut(s)	627
SsiI	CCGC	3 cut(s)	573, 693, 759
SstI	GAGCTC	1 cut(s)	334
StyI	CCWWGG	2 cut(s)	153, 726
TaaI	ACNGT	2 cut(s)	358, 595
TaiI	ACGT	2 cut(s)	199, 319
TaqI	TCGA	1 cut(s)	468
TasI	AATT	1 cut(s)	627
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	2 cut(s)	575, 761
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	4 cut(s)	189, 219, 396, 597
Tru9I	TTAA	4 cut(s)	189, 219, 396, 597
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	29, 302, 575
Tsp45I	GTSAC	1 cut(s)	403
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	205, 460
XagI	CCTNNNNNAGG	1 cut(s)	496
XapI	RAATTY	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.