Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

8603593 .. 8604632

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCATTGTTTCAGGGTCCAAAGAAAGGCGGAAAGCTCCCATTCGCAGCTTCAAAGAAGAAGCTGGAGAAGGTGGTGAACCCACTGTTCGAGAAGCGCCCGAAGCAGTTCGGGATCGGAGGGGCATTGCCTTTGAAGAGGGATCTGACCCGATTCGTCAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAGAGAATCCTCAAGCAGAGGCTCAAGGTCCCACCAGCTCTCAACCAGTTCACAAAGACCCTTGATAAGAACCTCGCAACAAGCCTGTTCAAGATGCTTCTGAAGTACAGGCCTAGAGACAAAGTAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCTCAAGCAGAGACTGAAGGAAAAGACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

125

Amino Acids

14.47

Weight (kDa)

10.8

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	2 cut(s)	122, 150
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	54, 136, 283, 340
AluBI	AGCT	4 cut(s)	37, 50, 64, 230
AluI	AGCT	4 cut(s)	37, 50, 64, 230
Alw26I	GTCTC	2 cut(s)	303, 350
AlwI	GGATC	2 cut(s)	122, 150
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	164, 302
ApeKI	GCWGC	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	3 cut(s)	17, 165, 220
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	2 cut(s)	17, 220
BanII	GRGCYC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	303, 350
BfaI	CTAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme18I	GGWCC	2 cut(s)	17, 220
BmgT120I	GGNCC	3 cut(s)	17, 165, 220
BmiI	GGNNCC	2 cut(s)	18, 222
BmsI	GCATC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	86
BpuEI	CTTGAG	3 cut(s)	188, 200, 333
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	2 cut(s)	166, 304
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	303, 350
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	166, 304
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	114, 142
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	166, 304
BspLI	GGNNCC	2 cut(s)	18, 222
BspPI	GGATC	2 cut(s)	122, 150
BsrDI	GCAATG	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	114, 142
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	87, 374
Bst6I	CTCTTC	2 cut(s)	131, 188
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	117, 145
BstMAI	GTCTC	2 cut(s)	303, 350
BstMBI	GATC	2 cut(s)	114, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	166, 304
BtsIMutI	CAGTG	1 cut(s)	83
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	17, 165, 220
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	298
CviQI	GTAC	1 cut(s)	298
DpnI	GATC	2 cut(s)	116, 144
DpnII	GATC	2 cut(s)	114, 142
Eam1104I	CTCTTC	2 cut(s)	131, 188
EarI	CTCTTC	2 cut(s)	131, 188
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	349
Eco47I	GGWCC	2 cut(s)	17, 220
Eco57I	CTGAAG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	168
FaqI	GGGAC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	166, 304
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	99
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	153, 181, 198
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	79, 243
Hpy188I	TCNGA	5 cut(s)	119, 147, 180, 186, 294
Hpy188III	TCNNGA	3 cut(s)	91, 112, 283
Hpy8I	GTNNAC	2 cut(s)	79, 243
HpyAV	CCTTC	3 cut(s)	64, 319, 356
HpyCH4III	ACNGT	2 cut(s)	87, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	114, 142
LmnI	GCTCC	2 cut(s)	42, 328
LpnPI	CCDG	5 cut(s)	50, 240, 251, 286, 290
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	306
MalI	GATC	2 cut(s)	116, 144
MboI	GATC	2 cut(s)	114, 142
MboII	GAAGA	5 cut(s)	70, 148, 202, 205, 334
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	349
MnlI	CCTC	6 cut(s)	113, 132, 180, 204, 212, 275
MroXI	GAANNNNTTC	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	2 cut(s)	114, 142
NlaIV	GGNNCC	2 cut(s)	18, 222
PceI	AGGCCT	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	3 cut(s)	153, 181, 198
PkrI	GCNGC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	220
Psp5II	RGGWCCY	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	18, 222
PspPI	GGNCC	3 cut(s)	17, 165, 220
PspPPI	RGGWCCY	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	2 cut(s)	114, 142
Sau96I	GGNCC	3 cut(s)	17, 165, 220
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	7 cut(s)	39, 52, 66, 75, 222, 232, 267
SfaNI	GCATC	1 cut(s)	276
SinI	GGWCC	2 cut(s)	17, 220
SmlI	CTYRAG	3 cut(s)	203, 215, 348
SmoI	CTYRAG	3 cut(s)	203, 215, 348
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	87, 374
TaqI	TCGA	1 cut(s)	90
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	153, 181, 198
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	1 cut(s)	47
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	17, 220
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.