Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

72987606 .. 72990837

Gene Structure 3232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAGAGAAGAAGATGATAGAGGAGGTCAAGAAGGCTTACAAGGAGGATTTGAAGCTTCATCTAAGAATGACAACCAGTCCCCCAAGGCCACAGGAATGGTGCCAATAGAAGTACCTTATTGGAATCAAGTCTTCGGGGACCTGGGATGGGCACCGATGGTGGATATTGGAAGGGCAACAAGCCTCGTTCAAGATGCTTCGAAGTATAGGCCTGAAGACAAAGCGAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCTCGGCAGAGACCGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATCGCTCATGATGTCGATCCAGTTGAGTTGGTTGTATGGCTCCTCGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

139

Amino Acids

15.29

Weight (kDa)

4.76

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	89 - 137	2.7e-10	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	100, 151
AccB7I	CCANNNNNTGG	1 cut(s)	361
AclWI	GGATC	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	2 cut(s)	114, 311
AfiI	CCNNNNNNNGG	2 cut(s)	148, 361
AgsI	TTSAA	4 cut(s)	53, 191, 248, 284
AhdI	GACNNNNNGTC	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	56, 358
AluI	AGCT	2 cut(s)	56, 358
Alw26I	GTCTC	2 cut(s)	257, 320
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	3 cut(s)	87, 209, 351
AspS9I	GGNCC	2 cut(s)	139, 352
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	100, 151
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	124, 222
BccI	CCATC	2 cut(s)	141, 151
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	257, 320
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	139
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	139, 352
BmiI	GGNNCC	4 cut(s)	102, 140, 153, 407
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	184
BpiI	GAAGAC	2 cut(s)	124, 222
Bpu14I	TTCGAA	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	381
BsaI	GGTCTC	2 cut(s)	257, 320
BsaJI	CCNNGG	2 cut(s)	84, 142
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 361
Bse1I	ACTGG	2 cut(s)	76, 386
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	84, 142
BseGI	GGATG	1 cut(s)	152
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	2 cut(s)	148, 361
BseNI	ACTGG	2 cut(s)	76, 386
BseRI	GAGGAG	2 cut(s)	36, 398
BseSI	GKGCMC	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	354
BshFI	GGCC	3 cut(s)	89, 211, 353
BshNI	GGYRCC	2 cut(s)	100, 151
BslFI	GGGAC	2 cut(s)	64, 152
BslI	CCNNNNNNNGG	2 cut(s)	148, 361
BsmAI	GTCTC	2 cut(s)	257, 320
BsmFI	GGGAC	2 cut(s)	64, 152
BsnI	GGCC	3 cut(s)	89, 211, 353
Bso31I	GGTCTC	2 cut(s)	257, 320
Bsp119I	TTCGAA	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	154, 257
Bsp143I	GATC	1 cut(s)	382
BspANI	GGCC	3 cut(s)	89, 211, 353
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	4 cut(s)	102, 140, 153, 407
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	200
BspT107I	GGYRCC	2 cut(s)	100, 151
BspTNI	GGTCTC	2 cut(s)	257, 320
BsrI	ACTGG	2 cut(s)	76, 386
BssECI	CCNNGG	2 cut(s)	84, 142
BssMI	GATC	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	280, 314
BstBI	TTCGAA	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	2 cut(s)	257, 320
BstMBI	GATC	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	154
BstV2I	GAAGAC	2 cut(s)	124, 222
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	89, 211, 353
BtsCI	GGATG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	139, 352
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	113, 310
CviAII	CATG	2 cut(s)	323, 374
CviQI	GTAC	2 cut(s)	113, 310
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	2 cut(s)	257, 320
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	326, 377
FaiI	YATR	5 cut(s)	207, 324, 375, 403, 418
FaqI	GGGAC	2 cut(s)	64, 152
FatI	CATG	2 cut(s)	322, 373
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	257
GsaI	CCCAGC	1 cut(s)	358
HaeIII	GGCC	3 cut(s)	89, 211, 353
HgaI	GACGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	326, 377
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	319
Hpy188III	TCNNGA	3 cut(s)	29, 191, 374
HpyAV	CCTTC	4 cut(s)	26, 165, 227, 263
HpyCH4III	ACNGT	2 cut(s)	280, 314
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	326, 377
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	2 cut(s)	236, 411
LpnPI	CCDG	7 cut(s)	78, 89, 128, 155, 225, 368, 399
LweI	GCATC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	5 cut(s)	20, 23, 124, 227, 242
MhlI	GDGCHC	2 cut(s)	154, 257
MnlI	CCTC	6 cut(s)	14, 17, 38, 194, 344, 419
MslI	CAYNNNNRTG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	326, 377
NlaIV	GGNNCC	4 cut(s)	102, 140, 153, 407
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	200
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	4 cut(s)	102, 140, 153, 407
PspPI	GGNCC	2 cut(s)	139, 352
PspPPI	RGGWCCY	1 cut(s)	139
RsaI	GTAC	2 cut(s)	114, 311
RsaNI	GTAC	2 cut(s)	113, 310
RseI	CAYNNNNRTG	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	2 cut(s)	139, 352
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	154, 257
SetI	ASST	7 cut(s)	28, 58, 118, 144, 332, 336, 360
SfaNI	GCATC	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	95
SseBI	AGGCCT	1 cut(s)	211
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	280, 314
TaqI	TCGA	2 cut(s)	200, 381
TaqII	GACCGA	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	48
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.