Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

36460055 .. 36461863

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024502

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCGAGACATCTAAGACGATGAGATCAAAACAGCGGCGCTCAAGCAACAAGATTTGGGGTCCAAAGAAAGGCGGAAAGCTCCCATTCGCAGCTTCAAAGAAGAAGCCGAGGGATCTGACCCGATTCGTCAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAGAGAATCCTCAAGCAGAGGCTCAAGGTCCCACCAGCTCTCAACCAATTCACAAAGACCCTTGATAAGAACCTCGGTATCCTGTTCAAGATGCTTCTGAAGTACATGCCTAGAGACAAAGCAGAGAAGAAGGAGAGTCTTTTGAAAAGGGCTCAAAAGCCTATTGTTGTGAAGTACGGTCGCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCAAAGCTTGTGGTTATCGCTCGTGATGTCAATCCAATTGAGTTGCTTTATGCAGAAAGATGGAGATCCCCTATTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

155

Amino Acids

18.03

Weight (kDa)

11.07

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	100 - 141	1.1e-08	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	37, 75
AclWI	GGATC	2 cut(s)	123, 441
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	2 cut(s)	269, 341
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	3 cut(s)	99, 253, 310
AluBI	AGCT	4 cut(s)	82, 95, 203, 388
AluI	AGCT	4 cut(s)	82, 95, 203, 388
Alw26I	GTCTC	2 cut(s)	2, 273
AlwI	GGATC	2 cut(s)	123, 441
AoxI	GGCC	2 cut(s)	3, 137
ApeKI	GCWGC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	62, 138, 193
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	2 cut(s)	62, 193
BaeI	ACNNNNGTAYC	2 cut(s)	226, 259
BanII	GRGCYC	1 cut(s)	319
BauI	CACGAG	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	435
BciVI	GTATCC	1 cut(s)	254
BcoDI	GTCTC	2 cut(s)	2, 273
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	38, 93
BlsI	GCNGC	2 cut(s)	39, 94
Bme18I	GGWCC	2 cut(s)	62, 193
BmgT120I	GGNCC	3 cut(s)	62, 138, 193
BmiI	GGNNCC	2 cut(s)	63, 195
BmsI	GCATC	1 cut(s)	246
BpuEI	CTTGAG	3 cut(s)	28, 161, 173
BsaBI	GATNNNNATC	2 cut(s)	411, 445
BsaJI	CCNNGG	3 cut(s)	110, 141, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse8I	GATNNNNATC	2 cut(s)	411, 445
BseDI	CCNNGG	3 cut(s)	110, 141, 238
BseJI	GATNNNNATC	2 cut(s)	411, 445
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	104
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	2 cut(s)	5, 139
BsiEI	CGRYCG	1 cut(s)	346
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	2, 273
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	5, 139
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	26, 115, 446
BspACI	CCGC	2 cut(s)	37, 75
BspANI	GGCC	2 cut(s)	5, 139
BspLI	GGNNCC	2 cut(s)	63, 195
BspPI	GGATC	2 cut(s)	123, 441
BssECI	CCNNGG	3 cut(s)	110, 141, 238
BssMI	GATC	3 cut(s)	26, 115, 446
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	141
Bst2BI	CACGAG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	29, 118, 449
BstMAI	GTCTC	2 cut(s)	2, 273
BstMBI	GATC	3 cut(s)	26, 115, 446
BstMCI	CGRYCG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	2 cut(s)	115, 446
BstYI	RGATCY	2 cut(s)	115, 446
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	5, 139
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	3 cut(s)	62, 138, 193
Csp6I	GTAC	2 cut(s)	268, 340
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	2 cut(s)	271, 353
CviQI	GTAC	2 cut(s)	268, 340
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	3 cut(s)	28, 117, 448
DpnII	GATC	3 cut(s)	26, 115, 446
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	62, 193
Eco57I	CTGAAG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	274, 356
FaiI	YATR	3 cut(s)	272, 354, 432
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	270, 352
Fnu4HI	GCNGC	2 cut(s)	38, 93
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	2 cut(s)	38, 93
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	2 cut(s)	38, 93
HaeII	RGCGCY	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	5, 139
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	274, 356
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	126, 154, 171, 301
HphI	GGTGA	1 cut(s)	349
Hpy188I	TCNGA	4 cut(s)	120, 153, 159, 264
Hpy188III	TCNNGA	2 cut(s)	253, 404
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	2 cut(s)	434, 458
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	274, 356
HspAI	GCGC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	26, 115, 446
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	2 cut(s)	213, 260
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	28, 117, 448
MboI	GATC	3 cut(s)	26, 115, 446
MboII	GAAGA	4 cut(s)	115, 175, 178, 304
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	2 cut(s)	115, 446
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	2 cut(s)	212, 417
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	6 cut(s)	105, 153, 177, 185, 248, 374
MspA1I	CMGCKG	1 cut(s)	37
MunI	CAATTG	1 cut(s)	417
NdeII	GATC	3 cut(s)	26, 115, 446
NlaIII	CATG	2 cut(s)	274, 356
NlaIV	GGNNCC	2 cut(s)	63, 195
NmeAIII	GCCGAG	2 cut(s)	31, 135
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	274
PfeI	GAWTC	3 cut(s)	126, 154, 171
PkrI	GCNGC	2 cut(s)	39, 94
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	63, 195
PspPI	GGNCC	3 cut(s)	62, 138, 193
PspPPI	RGGWCCY	1 cut(s)	193
PsuI	RGATCY	2 cut(s)	115, 446
RsaI	GTAC	2 cut(s)	269, 341
RsaNI	GTAC	2 cut(s)	268, 340
SatI	GCNGC	2 cut(s)	38, 93
Sau3AI	GATC	3 cut(s)	26, 115, 446
Sau96I	GGNCC	3 cut(s)	62, 138, 193
SchI	GAGTC	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	8 cut(s)	84, 97, 195, 205, 240, 362, 366, 390
SfaNI	GCATC	1 cut(s)	246
SinI	GGWCC	2 cut(s)	62, 193
SmlI	CTYRAG	3 cut(s)	43, 176, 188
SmoI	CTYRAG	3 cut(s)	43, 176, 188
Sse9I	AATT	2 cut(s)	212, 417
SsiI	CCGC	2 cut(s)	37, 75
SspMI	CTAG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	344
TasI	AATT	2 cut(s)	212, 417
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	3 cut(s)	126, 154, 171
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	62, 193
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.