Rroxscaffold_1G00043430

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
61965218 .. 61968237
3020 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00043430.1

Sequence Viewer

Length: 357 bp
ATGATAGAGGAGGTCAAGAAGGCTTACAAGGAGGATTTGAAGCTTCATCTAAGAATGACAACCAGTCCCCCAAGGCCACGGGGAATGGTATCAAGAAGCCCTAGAGGCATCGCCACACTTTCACCAACGGGGTATGGAAGTGAAGTTCAACGGAACAAGAGAACTAAATATGATACAGCAAACTATACGGATAACGATTGTGCTTTAAAAGGTATCCTTCTCGAAGACAACAAGCCTGTTCAAGATGCTTCGAAGTATAGGCACGAAGACAAAGCGAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCTCGGGCGGGCGGAAGGAAAGACGGTTGAAGCCAAGAAGCCTATTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.42

Weight (kDa)

9.81

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 312, 316
AgsI TTSAA 5 cut(s) 40, 149, 242, 299, 334
AhdI GACNNNNNGTC 1 cut(s) 63
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 114
AsuII TTCGAA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 307
BanII GRGCYC 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 231, 273
BciVI GTATCC 1 cut(s) 224
BfaI CTAG 1 cut(s) 102
BfuI GTATCC 1 cut(s) 224
BglI GCCNNNNNGGC 1 cut(s) 105
BmeRI GACNNNNNGTC 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 307
BmsI GCATC 2 cut(s) 117, 235
BpiI GAAGAC 2 cut(s) 231, 273
Bpu14I TTCGAA 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 71, 77
Bse1I ACTGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 71, 77
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 23
BshFI GGCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 307
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 308
BspACI CCGC 2 cut(s) 312, 316
BspANI GGCC 1 cut(s) 76
BspT104I TTCGAA 1 cut(s) 251
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 71, 77
BssT1I CCWWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 330
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstV2I GAAGAC 2 cut(s) 231, 273
BsuI GTATCC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 314
CseI GACGC 1 cut(s) 279
CviJI RGCY 8 cut(s) 23, 43, 76, 99, 235, 306, 337, 345
CviKI_1 RGCY 8 cut(s) 23, 43, 76, 99, 235, 306, 337, 345
DdeI CTNAG 1 cut(s) 50
DraI TTTAAA 1 cut(s) 207
DriI GACNNNNNGTC 1 cut(s) 63
Eam1105I GACNNNNNGTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 71
FaiI YATR 4 cut(s) 135, 171, 186, 258
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 1 cut(s) 51
FauI CCCGC 1 cut(s) 305
FriOI GRGCYC 1 cut(s) 308
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 76
HgaI GACGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 41
HphI GGTGA 1 cut(s) 114
Hpy188III TCNNGA 4 cut(s) 16, 93, 221, 242
HpyAV CCTTC 4 cut(s) 13, 227, 278, 313
HpyCH4III ACNGT 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 50
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 2 cut(s) 76, 249
LweI GCATC 2 cut(s) 117, 235
MaeI CTAG 1 cut(s) 102
MboII GAAGA 3 cut(s) 236, 278, 293
MhlI GDGCHC 1 cut(s) 308
MnlI CCTC 3 cut(s) 4, 25, 98
MseI TTAA 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 105
NspV TTCGAA 1 cut(s) 251
SaqAI TTAA 1 cut(s) 206
SduI GDGCHC 1 cut(s) 308
SetI ASST 3 cut(s) 15, 45, 214
SfaNI GCATC 2 cut(s) 117, 235
SfuI TTCGAA 1 cut(s) 251
SsiI CCGC 2 cut(s) 312, 316
SspMI CTAG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 222, 251
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 2 cut(s) 166, 203
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.