Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

26684099 .. 26684907

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG122500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTGTTTTCTGTGTATGTAGCTACAAGTCTGTTCAAGATGCTTTTGAAGTACAGGCCTGAGGACAAAGCAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCACAGGCAGAAACTGAAGGAAAAACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAATATGGTCTCAACCATGTCACCTACCTCATTGAGCAGAATAAGGCTCAACTCGTAGTTATTGCTCATGATGTGGATCCGATAGAGTTGGTTGTCTGGCTCCCTGCCTTGTGCAGGAAGATGGAAATCCCCTACTGCATTGTGAAGGGCAAAGCACGCTTGGGAGCGATCGTCCATCAGAAAACTGCTTCGGTTTTGTGCCTGACAACGGTTAAGAATGAAGATAAGATGGAGTTCAGCAAGGTTTTGGAAGCAATAAAGGCTAACTTCAATGACAAGTATGAGGAAAACAGGAAAAAGTGGGGTGGTGGCATCATGGGTTCCAAATCCCAGGCCAAAACTAAGGCAAAGGAAAGGCTCCTCGCAAAAGAAGCCGCTCAAAGAATGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

181

Amino Acids

20.57

Weight (kDa)

9.67

Isoelectric Point (pI)

24.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	38 - 129	1.2e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	530
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	2 cut(s)	224, 237
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	267, 361
AgsI	TTSAA	5 cut(s)	37, 49, 94, 131, 424
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	224, 237
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	56, 486
AsuHPI	GGTGA	1 cut(s)	166
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	229
BccI	CCATC	3 cut(s)	268, 336, 376
BciT130I	CCWGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	485
BmiI	GGNNCC	4 cut(s)	231, 254, 475, 512
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	2 cut(s)	30, 474
BsaBI	GATNNNNATC	2 cut(s)	228, 278
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	483
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 361
Bse21I	CCTNAGG	1 cut(s)	60
Bse8I	GATNNNNATC	2 cut(s)	228, 278
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	483
BseJI	GATNNNNATC	2 cut(s)	228, 278
BseLI	CCNNNNNNNGG	2 cut(s)	267, 361
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	324
BshFI	GGCC	2 cut(s)	58, 488
BsiEI	CGRYCG	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	267, 361
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	58, 488
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	229, 321
BspACI	CCGC	1 cut(s)	528
BspANI	GGCC	2 cut(s)	58, 488
BspCNI	CTCAG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	231, 254, 475, 512
BspPI	GGATC	2 cut(s)	224, 237
BspTNI	GGTCTC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	2 cut(s)	229, 321
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	127, 364
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	60, 495
BstENI	CCTNNNNNAGG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	232, 324
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	229, 321
BstMCI	CGRYCG	1 cut(s)	324
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 413, 524
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	58, 488
Cac8I	GCNNGC	1 cut(s)	310
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	220
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	170, 221, 469
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	60, 495
DpnI	GATC	2 cut(s)	231, 323
DpnII	GATC	2 cut(s)	229, 321
Eco147I	AGGCCT	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	483
FaeI	CATG	3 cut(s)	173, 224, 472
FaiI	YATR	6 cut(s)	18, 159, 171, 222, 435, 470
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	3 cut(s)	169, 220, 468
Fnu4HI	GCNGC	1 cut(s)	528
Fsp4HI	GCNGC	1 cut(s)	528
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	58, 488
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	173, 224, 472
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	234, 333
Hpy188III	TCNNGA	2 cut(s)	37, 221
HpyAV	CCTTC	3 cut(s)	73, 110, 292
HpyCH4III	ACNGT	2 cut(s)	127, 364
HpyCH4V	TGCA	2 cut(s)	267, 291
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 413, 524
HpyF3I	CTNAG	2 cut(s)	60, 495
Hsp92II	CATG	3 cut(s)	173, 224, 472
Kzo9I	GATC	2 cut(s)	229, 321
LmnI	GCTCC	4 cut(s)	82, 258, 317, 516
LweI	GCATC	2 cut(s)	30, 474
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	231, 323
MbiI	CCGCTC	1 cut(s)	530
MboI	GATC	2 cut(s)	229, 321
MboII	GAAGA	3 cut(s)	88, 283, 386
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	103
MnlI	CCTC	4 cut(s)	55, 191, 430, 524
MseI	TTAA	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	3 cut(s)	309, 413, 524
NdeII	GATC	2 cut(s)	229, 321
NlaIII	CATG	3 cut(s)	173, 224, 472
NlaIV	GGNNCC	4 cut(s)	231, 254, 475, 512
NmuCI	GTSAC	1 cut(s)	172
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	529
Ple19I	CGATCG	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	4 cut(s)	231, 254, 475, 512
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	229
PvuI	CGATCG	1 cut(s)	324
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	229, 321
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	5 cut(s)	25, 179, 183, 399, 545
SfaNI	GCATC	2 cut(s)	30, 474
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	127, 364
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	530
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.