Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

26921433 .. 26923758

Gene Structure 2326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGAAGGTGGTGAACCCACTGTTCGAGAAGCCCCCGAAGCAGTTCGGGATCGGAGGGGCATTGCCTCTGAAGAGGGATCTGACCCGATTCGTCAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAGAGAATCCTTAAACAGAGGCTCAAGGTCCCACCAGCTCTCAACCAGTTCACAAAGACCTTTGATAAGAACCTCGGGCTCAAGCAGAGACTGAAGGAAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACAGTCTCAACCATGTCACCCACCTCATTGAGCAGATGGAGATCCCCTATTGCATTGTGAAGAGCAAAGCACGTTTGGGAGCGGTAATTCTTCTTACATATACATTCTGTTTTTTTGTTCTATCATGCGATGACTGCTTGAACAAACTTTCACTATCTTCTCATAGAATCCTTAACCTTTATATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

151

Amino Acids

17.52

Weight (kDa)

10.12

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	347
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	3 cut(s)	59, 87, 301
AcuI	CTGAAG	2 cut(s)	92, 242
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	239, 406
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	211, 275
AlwI	GGATC	3 cut(s)	59, 87, 301
AlwNI	CAGNNNCTG	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	102, 157
AsuHPI	GGTGA	2 cut(s)	25, 274
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	210
BccI	CCATC	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	211, 275
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	102, 157
BmiI	GGNNCC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	137, 194
BsaBI	GATNNNNATC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	105, 202
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	105, 202
BseJI	GATNNNNATC	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	211, 275
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	3 cut(s)	51, 79, 306
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	59, 87, 301
BspQI	GCTCTTC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	105, 202
BssMI	GATC	3 cut(s)	51, 79, 306
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	24, 235, 269
Bst6I	CTCTTC	3 cut(s)	68, 125, 320
BstKTI	GATC	3 cut(s)	54, 82, 309
BstMAI	GTCTC	2 cut(s)	211, 275
BstMBI	GATC	3 cut(s)	51, 79, 306
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 399
BstX2I	RGATCY	2 cut(s)	79, 306
BstYI	RGATCY	2 cut(s)	79, 306
BsuRI	GGCC	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	102, 157
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	278, 390
CviJI	RGCY	8 cut(s)	34, 103, 110, 151, 167, 208, 242, 250
CviKI_1	RGCY	8 cut(s)	34, 103, 110, 151, 167, 208, 242, 250
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	3 cut(s)	53, 81, 308
DpnII	GATC	3 cut(s)	51, 79, 306
Eam1104I	CTCTTC	3 cut(s)	68, 125, 320
EarI	CTCTTC	3 cut(s)	68, 125, 320
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	2 cut(s)	92, 242
Eco88I	CYCGRG	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	281, 393
FaiI	YATR	8 cut(s)	279, 364, 366, 391, 429, 447, 449, 454
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	277, 389
FriOI	GRGCYC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	281, 393
HinfI	GANTC	4 cut(s)	90, 118, 135, 432
HphI	GGTGA	2 cut(s)	25, 274
Hpy166II	GTNNAC	2 cut(s)	16, 180
Hpy188I	TCNGA	5 cut(s)	56, 72, 84, 117, 123
Hpy188III	TCNNGA	2 cut(s)	28, 49
Hpy8I	GTNNAC	2 cut(s)	16, 180
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	3 cut(s)	24, 235, 269
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 399
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	2 cut(s)	281, 393
Kzo9I	GATC	3 cut(s)	51, 79, 306
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	2 cut(s)	177, 188
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	53, 81, 308
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	3 cut(s)	51, 79, 306
MboII	GAAGA	6 cut(s)	85, 139, 142, 337, 347, 414
MflI	RGATCY	2 cut(s)	79, 306
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	351
MnlI	CCTC	7 cut(s)	50, 69, 78, 117, 141, 212, 299
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	2 cut(s)	141, 438
MwoI	GCNNNNNNNGC	2 cut(s)	40, 399
NdeII	GATC	3 cut(s)	51, 79, 306
NlaIII	CATG	2 cut(s)	281, 393
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	4 cut(s)	90, 118, 135, 432
PpuMI	RGGWCCY	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	2 cut(s)	102, 157
PspPPI	RGGWCCY	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	220
PsuI	RGATCY	2 cut(s)	79, 306
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	141, 438
Sau3AI	GATC	3 cut(s)	51, 79, 306
Sau96I	GGNCC	2 cut(s)	102, 157
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	8 cut(s)	12, 159, 169, 191, 204, 291, 340, 444
SinI	GGWCC	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	152, 209
SmoI	CTYRAG	2 cut(s)	152, 209
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	24, 235, 269
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	351
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	4 cut(s)	90, 118, 135, 432
Tru1I	TTAA	2 cut(s)	141, 438
Tru9I	TTAA	2 cut(s)	141, 438
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.