Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

445375 .. 447128

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCCCCAAAAGAGGCATAAAAGCTCCAGTCGCAGCTTCCAAGAAGAAGACAGACAAGGTTGTGAACCCGCTATTTGAGAAGCGCCCGAAGCAGTTCGGTATCGGTGGGGCATTGCCACCGAAGAGGGATCTGATCCGCTTCGTGAAATGGCCCAAGGTGGTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCTCCAGCTTTGAACCAGTTCACCAAGACCCTCGATAAGAACCTCGCCACCAGCTTGTTCAAGATGCTTCTCAAGTACAGGCCAGAGGACAAAGCTGCAAAGAAGGAGCGCCTTTTGAAAAGGGCCCAGGCCGAGACCGAAGGGAAAACTGTTGAGGCCAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCACGTGACTTACCTGATTGAGCAGAACAAGGCCCAGCTTGTTGTTATTGCACACGATGTTGACCCAATAGAGTTGGTTGTCTGGCTTCCTGCGTTATGTAGGAAGATGGAAGTCCCATATTGCATTGTGAAGGGCAAAGCACGCCTGGGATCGATTGTCCACAAGAAAACTGCATCAGTTTTGTGCTTGACAACAGTCAAGAACGAGGATAAGTTGGAGTTCAGCAAGGTCTTGGAGGCAATCAAGGCCAACTTCAATGACAAGTACGAAGAGTACAGGAAAAAGTGGGGAGGGGGCATCATGGGTTCCAAATCCCAGGCAAAAACTAGGGCGAAGGAGAAGCTCCTAGCGAAGGAAGCTGCTCAAAGGCTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

260

Amino Acids

29.42

Weight (kDa)

10.22

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	116 - 206	3.2e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	71, 139
AclWI	GGATC	5 cut(s)	130, 138, 181, 194, 559
AcvI	CACGTG	1 cut(s)	406
AfaI	GTAC	3 cut(s)	287, 668, 677
AfiI	CCNNNNNNNGG	2 cut(s)	14, 754
AgsI	TTSAA	5 cut(s)	205, 223, 271, 328, 658
AjnI	CCWGG	3 cut(s)	336, 546, 717
AluBI	AGCT	8 cut(s)	26, 38, 218, 264, 305, 439, 745, 761
AluI	AGCT	8 cut(s)	26, 38, 218, 264, 305, 439, 745, 761
Alw26I	GTCTC	2 cut(s)	338, 401
AlwI	GGATC	5 cut(s)	130, 138, 181, 194, 559
AoxI	GGCC	8 cut(s)	3, 152, 290, 333, 339, 366, 432, 648
ApaI	GGGCCC	1 cut(s)	337
ApeKI	GCWGC	3 cut(s)	35, 305, 761
Asp700I	GAANNNNTTC	2 cut(s)	95, 227
AspLEI	GCGC	2 cut(s)	87, 321
AspS9I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	337
BbrPI	CACGTG	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	47, 292, 748
BccI	CCATC	1 cut(s)	502
BciT130I	CCWGG	3 cut(s)	338, 548, 719
BcoDI	GTCTC	2 cut(s)	338, 401
BfaI	CTAG	2 cut(s)	729, 749
BfoI	RGCGCY	2 cut(s)	88, 322
BisI	GCNGC	3 cut(s)	36, 306, 762
BlsI	GCNGC	3 cut(s)	37, 307, 763
Bme1390I	CCNGG	3 cut(s)	338, 548, 719
BmgT120I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
BmiI	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
BmrFI	CCNGG	3 cut(s)	338, 548, 719
BmsI	GCATC	3 cut(s)	264, 584, 708
BoxI	GACNNNNGTC	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	12, 198
BpuEI	CTTGAG	2 cut(s)	176, 266
Bsa29I	ATCGAT	1 cut(s)	554
BsaAI	YACGTR	1 cut(s)	406
BsaI	GGTCTC	2 cut(s)	338, 401
BsaJI	CCNNGG	4 cut(s)	156, 336, 547, 717
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 754
Bse1I	ACTGG	2 cut(s)	29, 226
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	3 cut(s)	338, 548, 719
BseCI	ATCGAT	1 cut(s)	554
BseDI	CCNNGG	4 cut(s)	156, 336, 547, 717
BseLI	CCNNNNNNNGG	2 cut(s)	14, 754
BseMI	GCAATG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	29, 226
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	47, 292, 748
BseYI	CCCAGC	1 cut(s)	435
BshFI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
BshVI	ATCGAT	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	14, 754
BsmAI	GTCTC	2 cut(s)	338, 401
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
Bso31I	GGTCTC	2 cut(s)	338, 401
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	130, 135, 186, 551
BspACI	CCGC	2 cut(s)	71, 139
BspANI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
BspDI	ATCGAT	1 cut(s)	554
BspLI	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
BspPI	GGATC	5 cut(s)	130, 138, 181, 194, 559
BspTNI	GGTCTC	2 cut(s)	338, 401
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	29, 226
BssECI	CCNNGG	4 cut(s)	156, 336, 547, 717
BssMI	GATC	4 cut(s)	130, 135, 186, 551
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	338, 548, 719
Bst4CI	ACNGT	2 cut(s)	361, 598
Bst6I	CTCTTC	3 cut(s)	119, 176, 666
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	752
BstH2I	RGCGCY	2 cut(s)	88, 322
BstHHI	GCGC	2 cut(s)	87, 321
BstKTI	GATC	4 cut(s)	133, 138, 189, 554
BstMAI	GTCTC	2 cut(s)	338, 401
BstMBI	GATC	4 cut(s)	130, 135, 186, 551
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
BstNI	CCWGG	3 cut(s)	338, 548, 719
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSCI	CCNGG	3 cut(s)	336, 546, 717
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	47, 292, 748
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	130, 186
BstYI	RGATCY	2 cut(s)	130, 186
Bsu15I	ATCGAT	1 cut(s)	554
BsuRI	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
BsuTUI	ATCGAT	1 cut(s)	554
Cac8I	GCNNGC	1 cut(s)	544
CfoI	GCGC	2 cut(s)	87, 321
Cfr13I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
ClaI	ATCGAT	1 cut(s)	554
Csp6I	GTAC	3 cut(s)	286, 667, 676
CviAII	CATG	1 cut(s)	703
CviQI	GTAC	3 cut(s)	286, 667, 676
DpnI	GATC	4 cut(s)	132, 137, 188, 553
DpnII	GATC	4 cut(s)	130, 135, 186, 551
Eam1104I	CTCTTC	3 cut(s)	119, 176, 666
EarI	CTCTTC	3 cut(s)	119, 176, 666
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	2 cut(s)	338, 401
Eco72I	CACGTG	1 cut(s)	406
EcoNI	CCTNNNNNAGG	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	3 cut(s)	336, 546, 717
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	706
FaiI	YATR	5 cut(s)	20, 393, 499, 520, 704
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	1 cut(s)	702
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	36, 306, 762
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	36, 306, 762
FspBI	CTAG	2 cut(s)	729, 749
GlaI	GCGC	2 cut(s)	86, 320
GluI	GCNGC	3 cut(s)	36, 306, 762
GsaI	CCCAGC	1 cut(s)	439
GsuI	CTGGAG	2 cut(s)	12, 198
HaeII	RGCGCY	2 cut(s)	88, 322
HaeIII	GGCC	8 cut(s)	5, 154, 292, 335, 341, 368, 434, 650
HhaI	GCGC	2 cut(s)	87, 321
Hin1II	CATG	1 cut(s)	706
Hin6I	GCGC	2 cut(s)	85, 319
HinP1I	GCGC	2 cut(s)	85, 319
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	4 cut(s)	67, 231, 463, 562
Hpy188I	TCNGA	3 cut(s)	135, 168, 174
Hpy188III	TCNNGA	3 cut(s)	145, 271, 601
Hpy8I	GTNNAC	4 cut(s)	67, 231, 463, 562
HpyAV	CCTTC	6 cut(s)	199, 307, 344, 526, 730, 748
HpyCH4III	ACNGT	2 cut(s)	361, 598
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	308, 452, 525, 575
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	706
HspAI	GCGC	2 cut(s)	85, 319
Kzo9I	GATC	4 cut(s)	130, 135, 186, 551
LmnI	GCTCC	3 cut(s)	31, 316, 750
Lsp1109I	GCAGC	3 cut(s)	47, 292, 748
LweI	GCATC	3 cut(s)	264, 584, 708
MaeI	CTAG	2 cut(s)	729, 749
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	4 cut(s)	132, 137, 188, 553
MboI	GATC	4 cut(s)	130, 135, 186, 551
MboII	GAAGA	7 cut(s)	58, 61, 136, 190, 193, 517, 683
MflI	RGATCY	2 cut(s)	130, 186
MhlI	GDGCHC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	597
MroXI	GAANNNNTTC	2 cut(s)	95, 227
MspR9I	CCNGG	3 cut(s)	338, 548, 719
MvaI	CCWGG	3 cut(s)	338, 548, 719
MwoI	GCNNNNNNNGC	5 cut(s)	32, 91, 543, 647, 758
NdeII	GATC	4 cut(s)	130, 135, 186, 551
NlaIII	CATG	1 cut(s)	706
NlaIV	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	406
PdmI	GAANNNNTTC	2 cut(s)	95, 227
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	3 cut(s)	37, 307, 763
PmaCI	CACGTG	1 cut(s)	406
PmlI	CACGTG	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	596
Psp6I	CCWGG	3 cut(s)	336, 546, 717
PspCI	CACGTG	1 cut(s)	406
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	3 cut(s)	336, 546, 717
PspN4I	GGNNCC	5 cut(s)	6, 188, 210, 335, 709
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	5 cut(s)	4, 153, 333, 334, 433
PsuI	RGATCY	2 cut(s)	130, 186
RsaI	GTAC	3 cut(s)	287, 668, 677
RsaNI	GTAC	3 cut(s)	286, 667, 676
SatI	GCNGC	3 cut(s)	36, 306, 762
Sau3AI	GATC	4 cut(s)	130, 135, 186, 551
Sau96I	GGNCC	5 cut(s)	4, 153, 333, 334, 433
ScrFI	CCNGG	3 cut(s)	338, 548, 719
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	264, 584, 708
SmlI	CTYRAG	2 cut(s)	191, 281
SmoI	CTYRAG	2 cut(s)	191, 281
SsiI	CCGC	2 cut(s)	71, 139
SspMI	CTAG	2 cut(s)	729, 749
StyD4I	CCNGG	3 cut(s)	336, 546, 717
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	361, 598
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	2 cut(s)	243, 554
TaqII	GACCGA	1 cut(s)	362
TatI	WGTACW	2 cut(s)	285, 675
TfiI	GAWTC	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	35, 305, 761
Tsp45I	GTSAC	1 cut(s)	406
XagI	CCTNNNNNAGG	1 cut(s)	752
XmnI	GAANNNNTTC	2 cut(s)	95, 227
XspI	CTAG	2 cut(s)	729, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.