Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

13529500 .. 13532484

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G147500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTCCCAAAAGAGGTGTAAAACCAGCTGCTGCAGCGAAGAAGAAAACTGAGAAGGTTGTGAACCCACTATTTGAAAAGCGTACAAAGCAGTTTGGGATCGGCGGTGCTTTGCCTCCAAAGAGAGATTTGCACCGATTTGTGAAATGGCCCAAGGTTGTCCGTATCCAGAGGAAGAAGCGGATCCTCAAGCAACGTTTGAAGGTCCCACCAGCACTTAACCAGTTCACCAAGACTCTGGACAAGAACCTTGCTACAAGTCTCTTCAAGTTGCTGCTCAAGTACAGGCCTGAAGACAAAGCAGCAAAGAAGGAGCGTCTGCTGAAAAGAGCTCAAGCTGAAACTGAAGGAAAAACTGTTGAGGCAAAGAAGCCAATTGTTGTGAAATATGGACTCAACCACGTAACCTACCTGATTGAGCAGAATAAGGCTCAGCTAGTTGTTATTGCTCATGATGTGGACCCCATCGAGTTGGTTGTATGGCTTCCAGCCTTGTGCAGGAAGATGGAGATCCCATACTGCATTGTGAAGGGGAAATCACGCTTGGGAGCGATTCTCCACAAGAAAACAGCGGCTGCACTTTGCTTGACCACTGTTAAGAATGAGGATAAGTTGGAGTTCAGCAAGATTCTGGAGGCTATCAAGGCCAACTTCAACGACAAGTACGATGAGTACAGAAAGAAGTGGGGAGGTGGTATCATGGGCTCGAAATCACAGGCCAGGACCAAGGCGAAGGAGAAGCTCTTAGCAAAGGAAGCCGCACAGAGGCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

259

Amino Acids

29.32

Weight (kDa)

10.26

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	105, 181, 572, 759
AclI	AACGTT	1 cut(s)	196
AclWI	GGATC	4 cut(s)	107, 178, 191, 505
AcuI	CTGAAG	2 cut(s)	312, 366
AfaI	GTAC	4 cut(s)	85, 284, 665, 674
AfiI	CCNNNNNNNGG	3 cut(s)	14, 498, 765
AgsI	TTSAA	4 cut(s)	77, 202, 268, 655
AjnI	CCWGG	1 cut(s)	719
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	5 cut(s)	29, 332, 338, 436, 742
AluI	AGCT	5 cut(s)	29, 332, 338, 436, 742
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	4 cut(s)	107, 178, 191, 505
AlwNI	CAGNNNCTG	2 cut(s)	32, 575
AoxI	GGCC	4 cut(s)	149, 287, 645, 717
ApeKI	GCWGC	6 cut(s)	29, 32, 35, 274, 302, 575
AspS9I	GGNCC	4 cut(s)	150, 205, 460, 723
AsuHPI	GGTGA	1 cut(s)	220
AvaII	GGWCC	3 cut(s)	205, 460, 723
BamHI	GGATCC	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	334, 707
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	6 cut(s)	16, 19, 47, 261, 314, 562
BccI	CCATC	2 cut(s)	473, 499
BciT130I	CCWGG	1 cut(s)	721
BciVI	GTATCC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	2 cut(s)	437, 775
BfmI	CTRYAG	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	8 cut(s)	30, 33, 36, 275, 303, 573, 576, 759
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	8 cut(s)	31, 34, 37, 276, 304, 574, 577, 760
Bme1390I	CCNGG	1 cut(s)	721
Bme18I	GGWCC	3 cut(s)	205, 460, 723
BmgT120I	GGNCC	4 cut(s)	150, 205, 460, 723
BmiI	GGNNCC	4 cut(s)	6, 185, 207, 462
BmrFI	CCNGG	1 cut(s)	721
BpiI	GAAGAC	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	540, 572
BpmI	CTGGAG	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	3 cut(s)	173, 263, 318
BsaAI	YACGTR	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	153, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 498, 765
Bse1I	ACTGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	721
BseDI	CCNNGG	2 cut(s)	153, 726
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	3 cut(s)	14, 498, 765
BseMII	CTCAG	2 cut(s)	42, 446
BseNI	ACTGG	1 cut(s)	223
BseXI	GCAGC	6 cut(s)	16, 19, 47, 261, 314, 562
BsgI	GTGCAG	2 cut(s)	517, 561
BshFI	GGCC	4 cut(s)	151, 289, 647, 719
BsiHKAI	GWGCWC	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	3 cut(s)	14, 498, 765
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	4 cut(s)	151, 289, 647, 719
Bsp1286I	GDGCHC	2 cut(s)	334, 707
Bsp143I	GATC	3 cut(s)	99, 183, 510
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	4 cut(s)	105, 181, 572, 759
BspANI	GGCC	4 cut(s)	151, 289, 647, 719
BspCNI	CTCAG	2 cut(s)	43, 445
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	4 cut(s)	6, 185, 207, 462
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	4 cut(s)	107, 178, 191, 505
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	153, 726
BssMI	GATC	3 cut(s)	99, 183, 510
BssT1I	CCWWGG	2 cut(s)	153, 726
Bst2UI	CCWGG	1 cut(s)	721
Bst4CI	ACNGT	2 cut(s)	358, 595
Bst6I	CTCTTC	1 cut(s)	269
BstBAI	YACGTR	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	51, 432, 745
BstENI	CCTNNNNNAGG	1 cut(s)	496
BstKTI	GATC	3 cut(s)	102, 186, 513
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	99, 183, 510
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 88, 644, 755
BstNI	CCWGG	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	719
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	6 cut(s)	16, 19, 47, 261, 314, 562
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	183, 510
BstXI	CCANNNNNNTGG	2 cut(s)	238, 472
BstYI	RGATCY	2 cut(s)	183, 510
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	4 cut(s)	151, 289, 647, 719
BtsIMutI	CAGTG	1 cut(s)	591
CaiI	CAGNNNCTG	2 cut(s)	32, 575
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	4 cut(s)	150, 205, 460, 723
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	4 cut(s)	84, 283, 664, 673
CviAII	CATG	2 cut(s)	452, 700
CviQI	GTAC	4 cut(s)	84, 283, 664, 673
DdeI	CTNAG	3 cut(s)	51, 432, 745
DpnI	GATC	3 cut(s)	101, 185, 512
DpnII	GATC	3 cut(s)	99, 183, 510
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	332
Eco130I	CCWWGG	2 cut(s)	153, 726
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	334, 707
Eco47I	GGWCC	3 cut(s)	205, 460, 723
Eco53kI	GAGCTC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	312, 366
EcoICRI	GAGCTC	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	496
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	719
EcoT14I	CCWWGG	2 cut(s)	153, 726
EcoT38I	GRGCYC	2 cut(s)	334, 707
ErhI	CCWWGG	2 cut(s)	153, 726
FaeI	CATG	2 cut(s)	455, 703
FaiI	YATR	5 cut(s)	390, 453, 481, 517, 701
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	2 cut(s)	451, 699
Fnu4HI	GCNGC	8 cut(s)	30, 33, 36, 275, 303, 573, 576, 759
FriOI	GRGCYC	2 cut(s)	334, 707
Fsp4HI	GCNGC	8 cut(s)	30, 33, 36, 275, 303, 573, 576, 759
FspBI	CTAG	2 cut(s)	437, 775
GluI	GCNGC	8 cut(s)	30, 33, 36, 275, 303, 573, 576, 759
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	4 cut(s)	151, 289, 647, 719
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	455, 703
HinfI	GANTC	4 cut(s)	235, 393, 553, 628
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	3 cut(s)	64, 228, 460
Hpy188III	TCNNGA	4 cut(s)	169, 239, 452, 632
Hpy8I	GTNNAC	3 cut(s)	64, 228, 460
HpyAV	CCTTC	6 cut(s)	49, 196, 304, 341, 523, 727
HpyCH4III	ACNGT	2 cut(s)	358, 595
HpyCH4IV	ACGT	2 cut(s)	196, 402
HpyCH4V	TGCA	5 cut(s)	35, 133, 498, 522, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 88, 644, 755
HpyF3I	CTNAG	3 cut(s)	51, 432, 745
HpySE526I	ACGT	2 cut(s)	196, 402
Hsp92II	CATG	2 cut(s)	455, 703
Kzo9I	GATC	3 cut(s)	99, 183, 510
LmnI	GCTCC	3 cut(s)	10, 313, 548
Lsp1109I	GCAGC	6 cut(s)	16, 19, 47, 261, 314, 562
MaeI	CTAG	2 cut(s)	437, 775
MaeII	ACGT	2 cut(s)	196, 402
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	101, 185, 512
MboI	GATC	3 cut(s)	99, 183, 510
MboII	GAAGA	6 cut(s)	52, 55, 187, 256, 305, 514
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	183, 510
MhlI	GDGCHC	2 cut(s)	334, 707
MluCI	AATT	1 cut(s)	375
MlyI	GAGTC	2 cut(s)	229, 387
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	9 cut(s)	8, 126, 165, 197, 355, 598, 628, 683, 759
MseI	TTAA	2 cut(s)	219, 597
MspA1I	CMGCKG	2 cut(s)	29, 572
MspR9I	CCNGG	1 cut(s)	721
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	721
MwoI	GCNNNNNNNGC	4 cut(s)	35, 88, 644, 755
NdeII	GATC	3 cut(s)	99, 183, 510
NlaIII	CATG	2 cut(s)	455, 703
NlaIV	GGNNCC	4 cut(s)	6, 185, 207, 462
PagI	TCATGA	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	553, 628
PkrI	GCNGC	8 cut(s)	31, 34, 37, 276, 304, 574, 577, 760
PleI	GAGTC	2 cut(s)	229, 387
PpsI	GAGTC	2 cut(s)	229, 387
Ppu21I	YACGTR	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	719
PspGI	CCWGG	1 cut(s)	719
PspN4I	GGNNCC	4 cut(s)	6, 185, 207, 462
PspPI	GGNCC	4 cut(s)	150, 205, 460, 723
PspPPI	RGGWCCY	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	32, 575
PsuI	RGATCY	2 cut(s)	183, 510
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	4 cut(s)	85, 284, 665, 674
RsaNI	GTAC	4 cut(s)	84, 283, 664, 673
SacI	GAGCTC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	219, 597
SatI	GCNGC	8 cut(s)	30, 33, 36, 275, 303, 573, 576, 759
Sau3AI	GATC	3 cut(s)	99, 183, 510
Sau96I	GGNCC	4 cut(s)	150, 205, 460, 723
SchI	GAGTC	2 cut(s)	229, 387
ScrFI	CCNGG	1 cut(s)	721
SduI	GDGCHC	2 cut(s)	334, 707
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	3 cut(s)	205, 460, 723
SmlI	CTYRAG	3 cut(s)	188, 278, 333
SmoI	CTYRAG	3 cut(s)	188, 278, 333
Sse9I	AATT	1 cut(s)	375
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	4 cut(s)	105, 181, 572, 759
SspMI	CTAG	2 cut(s)	437, 775
SstI	GAGCTC	1 cut(s)	334
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	719
StyI	CCWWGG	2 cut(s)	153, 726
TaaI	ACNGT	2 cut(s)	358, 595
TaiI	ACGT	2 cut(s)	199, 405
TaqI	TCGA	2 cut(s)	468, 707
TasI	AATT	1 cut(s)	375
TatI	WGTACW	2 cut(s)	282, 672
TauI	GCSGC	2 cut(s)	575, 761
TfiI	GAWTC	2 cut(s)	553, 628
Tru1I	TTAA	2 cut(s)	219, 597
Tru9I	TTAA	2 cut(s)	219, 597
TscAI	CASTG	1 cut(s)	598
TseI	GCWGC	6 cut(s)	29, 32, 35, 274, 302, 575
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	3 cut(s)	205, 460, 723
XagI	CCTNNNNNAGG	1 cut(s)	496
XspI	CTAG	2 cut(s)	437, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.