Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

34974323 .. 34975608

Gene Structure 1286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCATTGTTTCAGGGTCCAAAGAAAGGCAGAAAGCTCCCATTCGCAGGTTCAAAGAAGAAGCCGATTCAAAGGAAGAAGAAAGTCCTCAAGCAGAGGCTCAAGGTCCCACCACCTCTCAACCAGTTCACAAAGACCCTTAATAAGAACCTCGCGAGTTTTCGGTACTGTTGCTTTGCCAAATATCAAATTGGTTATGGTAAACATGTTCATAGACTGAAGGAAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCATAACAAGGCCCAGCTTGTCGTTATCGCTCATGATGTCAATCCAATTGAGTTGCTTTATGCAGAAAGATGGAGATCCCCTTTTGCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

128

Amino Acids

14.88

Weight (kDa)

10.37

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	73 - 115	1.7e-09	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	38
AccII	CGCG	1 cut(s)	155
AclWI	GGATC	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	2 cut(s)	167, 263
AfiI	CCNNNNNNNGG	2 cut(s)	26, 47
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	54, 71, 236
AluBI	AGCT	2 cut(s)	37, 310
AluI	AGCT	2 cut(s)	37, 310
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	17, 106, 304
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	17, 106
BccI	CCATC	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	38
Bme18I	GGWCC	2 cut(s)	17, 106
BmgT120I	GGNCC	3 cut(s)	17, 106, 304
BmiI	GGNNCC	2 cut(s)	18, 108
BpuEI	CTTGAG	2 cut(s)	74, 86
BsaBI	GATNNNNATC	2 cut(s)	333, 367
BsaI	GGTCTC	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 47
Bse1I	ACTGG	1 cut(s)	124
Bse8I	GATNNNNATC	2 cut(s)	333, 367
BseJI	GATNNNNATC	2 cut(s)	333, 367
BseLI	CCNNNNNNNGG	2 cut(s)	26, 47
BseNI	ACTGG	1 cut(s)	124
BseYI	CCCAGC	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	26, 47
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	368
Bsp68I	TCGCGA	1 cut(s)	155
BspANI	GGCC	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	18, 108
BspMI	ACCTGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	368
Bst4CI	ACNGT	3 cut(s)	170, 232, 266
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	209
BstUI	CGCG	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	305
BtuMI	TCGCGA	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	38
CciI	TCATGA	1 cut(s)	325
Cfr13I	GGNCC	3 cut(s)	17, 106, 304
Csp6I	GTAC	2 cut(s)	166, 262
CviAII	CATG	3 cut(s)	206, 275, 326
CviJI	RGCY	7 cut(s)	37, 64, 100, 239, 247, 305, 310
CviKI_1	RGCY	7 cut(s)	37, 64, 100, 239, 247, 305, 310
CviQI	GTAC	2 cut(s)	166, 262
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	17, 106
Eco57I	CTGAAG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	106
FaeI	CATG	3 cut(s)	209, 278, 329
FaiI	YATR	7 cut(s)	198, 207, 213, 276, 297, 327, 354
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	3 cut(s)	205, 274, 325
GsaI	CCCAGC	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	209, 278, 329
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	129, 203
Hpy188III	TCNNGA	2 cut(s)	154, 326
Hpy8I	GTNNAC	2 cut(s)	129, 203
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	3 cut(s)	170, 232, 266
HpyCH4V	TGCA	2 cut(s)	356, 380
Hsp92II	CATG	3 cut(s)	209, 278, 329
Kzo9I	GATC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	3 cut(s)	33, 137, 320
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MboII	GAAGA	3 cut(s)	70, 88, 91
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	2 cut(s)	189, 339
MnlI	CCTC	5 cut(s)	90, 98, 126, 161, 296
MseI	TTAA	1 cut(s)	141
MunI	CAATTG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	155
NdeII	GATC	1 cut(s)	368
NlaIII	CATG	3 cut(s)	209, 278, 329
NlaIV	GGNNCC	2 cut(s)	18, 108
NmuCI	GTSAC	1 cut(s)	277
NruI	TCGCGA	1 cut(s)	155
NspI	RCATGY	1 cut(s)	209
PagI	TCATGA	1 cut(s)	325
PciI	ACATGT	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	106
PscI	ACATGT	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	306
PspN4I	GGNNCC	2 cut(s)	18, 108
PspPI	GGNCC	3 cut(s)	17, 106, 304
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	155
RsaI	GTAC	2 cut(s)	167, 263
RsaNI	GTAC	2 cut(s)	166, 262
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	368
Sau96I	GGNCC	3 cut(s)	17, 106, 304
SetI	ASST	8 cut(s)	39, 52, 108, 118, 153, 284, 288, 312
SinI	GGWCC	2 cut(s)	17, 106
SmlI	CTYRAG	2 cut(s)	89, 101
SmoI	CTYRAG	2 cut(s)	89, 101
Sse9I	AATT	2 cut(s)	189, 339
TaaI	ACNGT	3 cut(s)	170, 232, 266
TasI	AATT	2 cut(s)	189, 339
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	200
VpaK11BI	GGWCC	2 cut(s)	17, 106
XceI	RCATGY	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.