AT3G20210

Peptidase C13 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7052347 .. 7054743
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20210.1

Sequence Viewer

Length: 1401 bp
ATGTCTAGTCCTCTTGGTCACTTTCAGATTCTTGTTTTTCTTCATGCTTTGCTTATCTTCTCAGCTGAGTCCCGCAAAACCCAATTGCTGAACGATAATGATGTTGAATCTAGCGACAAGAGTGCAAAAGGCACACGATGGGCTGTTTTAGTTGCTGGATCAAATGAATATTATAACTACAGGCATCAGGCTGACATATGCCACGCGTATCAGATACTCCGAAAAGGCGGTTTAAAAGATGAAAACATCATTGTGTTTATGTATGATGATATCGCGTTTTCCTCGGAGAATCCTAGGCCTGGAGTTATCATTAATAAACCAGATGGAGAAGATGTTTATAAAGGAGTTCCTAAGGACTACACTAAAGAAGCTGTTAATGTTCAAAACTTCTACAATGTGTTACTTGGAAATGAAAGTGGCGTCACAGGAGGAAATGGCAAAGTTGTGAAAAGTGGTCCTAATGATAATATCTTCATCTATTATGCTGACCATGGAGCTCCTGGCTTAATAGCGATGCCCACTGGTGATGAAGTTATGGCAAAAGATTTCAATGAAGTCTTGGAGAAGATGCATAAGAGAAAAAAATACAACAAGATGGTGATCTATGTTGAAGCATGTGAATCAGGAAGTATGTTTGAAGGGATTTTAAAGAAAAATCTCAACATATACGCAGTGACTGCTGCTAATTCTAAAGAGAGCAGCTGGGGAGTTTACTGTCCTGAGTCATATCCTCCTCCTCCTTCTGAGATTGGAACTTGTCTCGGCGATACATTTAGCATCTCTTGGCTTGAGGACAGTGACCTTCATGACATGAGCAAAGAGACTTTGGAGCAACAATACCACGTTGTAAAGAGAAGAGTAGGATCTGATGTACCAGAGACTTCTCATGTATGCCGTTTCGGAACAGAGAAGATGCTTAAAGATTATCTTTCCTCTTACATTGGAAGAAATCCTGAAAACGATAACTTCACTTTCACGGAATCCTTTTCCTCACCAATCTCTAATTCTGGCTTGGTCAATCCGCGCGATATTCCTCTGCTATACCTCCAGAGAAAGATTCAAAAAGCTCCAATGGGATCACTTGAAAGCAAAGAAGCTCAGAAGAAATTGCTTGACGAAAAGAATCATAGGAAACAAATCGATCAGAGCATTACAGACATTCTGCGGCTTTCAGTTAAACAAACCAATGTCTTAAATCTCTTAACTTCCACAAGAACAACAGGACAGCCTCTTGTAGACGATTGGGATTGCTTCAAGACTCTAGTTAATAGCTTCAAGAATCACTGCGGTGCAACGGTGCATTACGGATTGAAGTATACAGGAGCGCTTGCCAATATCTGCAATATGGGAGTGGATGTGAAGCAAACTGTTTCAGCCATTGAACAAGCTTGTTCGATGTAA

Protein Analysis

466

Amino Acids

52.08

Weight (kDa)

6.09

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 46 - 315 6.1e-119 Peptidase C13 family
Legum_prodom PF20985 368 - 464 1.3e-29 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 174, 339
AccI GTMKAC 2 cut(s) 1236, 1316
AccII CGCG 4 cut(s) 206, 275, 1024, 1026
AciI CCGC 5 cut(s) 73, 228, 1022, 1165, 1287
AclWI GGATC 3 cut(s) 166, 871, 1084
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 1 cut(s) 873
AfeI AGCGCT 1 cut(s) 1326
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 204
AjnI CCWGG 2 cut(s) 298, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 988, 1020
AleI CACNNNNGTG 1 cut(s) 1287
AluBI AGCT 8 cut(s) 65, 371, 497, 702, 1067, 1097, 1272, 1388
AluI AGCT 8 cut(s) 65, 371, 497, 702, 1067, 1097, 1272, 1388
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 3 cut(s) 764, 815, 872
AlwI GGATC 3 cut(s) 166, 871, 1084
AlwNI CAGNNNCTG 1 cut(s) 677
Aor51HI AGCGCT 1 cut(s) 1326
AoxI GGCC 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 680, 699
AseI ATTAAT 1 cut(s) 312
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 2 cut(s) 1026, 1327
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 3 cut(s) 536, 610, 984
AvaII GGWCC 1 cut(s) 455
AvrII CCTAGG 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 351
BanII GRGCYC 1 cut(s) 499
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 2 cut(s) 667, 711
BccI CCATC 3 cut(s) 132, 317, 589
BceAI ACGGC 1 cut(s) 879
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 2 cut(s) 300, 501
BcoDI GTCTC 3 cut(s) 764, 815, 872
BfaI CTAG 4 cut(s) 6, 111, 294, 1262
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 1 cut(s) 1328
BisI GCNGC 3 cut(s) 681, 700, 1166
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 3 cut(s) 682, 701, 1167
Bme1390I CCNGG 2 cut(s) 300, 501
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmrFI CCNGG 2 cut(s) 300, 501
BmsI GCATC 5 cut(s) 193, 504, 558, 786, 903
BpmI CTGGAG 2 cut(s) 321, 1031
BpuEI CTTGAG 1 cut(s) 809
Bsa29I ATCGAT 1 cut(s) 1140
BsaBI GATNNNNATC 1 cut(s) 599
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 282, 293, 490
BsaXI ACNNNNNCTCC 4 cut(s) 318, 348, 1341, 1371
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 526
Bse21I CCTNAGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 599
BseBI CCWGG 2 cut(s) 300, 501
BseCI ATCGAT 1 cut(s) 1140
BseDI CCNNGG 3 cut(s) 282, 293, 490
BseGI GGATG 1 cut(s) 1360
BseJI GATNNNNATC 1 cut(s) 599
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 5 cut(s) 57, 75, 711, 735, 1112
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 2 cut(s) 723, 726
BseXI GCAGC 2 cut(s) 667, 711
BseYI CCCAGC 1 cut(s) 702
Bsh1236I CGCG 4 cut(s) 206, 275, 1024, 1026
BshFI GGCC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 1140
BsiHKAI GWGCWC 1 cut(s) 499
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 3 cut(s) 764, 815, 872
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 5 cut(s) 158, 600, 863, 1076, 1141
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 5 cut(s) 73, 228, 1022, 1165, 1287
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 5 cut(s) 58, 74, 712, 736, 1111
BspDI ATCGAT 1 cut(s) 1140
BspFNI CGCG 4 cut(s) 206, 275, 1024, 1026
BspHI TCATGA 1 cut(s) 805
BspPI GGATC 3 cut(s) 166, 871, 1084
BsrI ACTGG 1 cut(s) 526
BssECI CCNNGG 3 cut(s) 282, 293, 490
BssMI GATC 5 cut(s) 158, 600, 863, 1076, 1141
BssNAI GTATAC 1 cut(s) 1317
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 293, 490
Bst1107I GTATAC 1 cut(s) 1317
Bst2UI CCWGG 2 cut(s) 300, 501
Bst4CI ACNGT 4 cut(s) 716, 797, 1297, 1369
Bst6I CTCTTC 1 cut(s) 850
BstACI GRCGYC 1 cut(s) 420
BstAPI GCANNNNNTGC 1 cut(s) 677
BstC8I GCNNGC 1 cut(s) 1329
BstDEI CTNAG 6 cut(s) 61, 66, 351, 720, 744, 1098
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 1 cut(s) 1360
BstFNI CGCG 4 cut(s) 206, 275, 1024, 1026
BstH2I RGCGCY 1 cut(s) 1328
BstHHI GCGC 2 cut(s) 1026, 1327
BstKTI GATC 5 cut(s) 161, 603, 866, 1079, 1144
BstMAI GTCTC 3 cut(s) 764, 815, 872
BstMBI GATC 5 cut(s) 158, 600, 863, 1076, 1141
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNI CCWGG 2 cut(s) 300, 501
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 298, 499
BstSFI CTRYAG 1 cut(s) 178
BstUI CGCG 4 cut(s) 206, 275, 1024, 1026
BstV1I GCAGC 2 cut(s) 667, 711
BstX2I RGATCY 1 cut(s) 863
BstYI RGATCY 1 cut(s) 863
BstZ17I GTATAC 1 cut(s) 1317
Bsu15I ATCGAT 1 cut(s) 1140
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 298
BsuTUI ATCGAT 1 cut(s) 1140
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 1 cut(s) 1360
BtsI GCAGTG 2 cut(s) 678, 1282
BtsIMutI CAGTG 4 cut(s) 519, 678, 802, 1282
Cac8I GCNNGC 1 cut(s) 1329
CaiI CAGNNNCTG 1 cut(s) 677
CciI TCATGA 1 cut(s) 805
CfoI GCGC 2 cut(s) 1026, 1327
Cfr13I GGNCC 1 cut(s) 455
ClaI ATCGAT 1 cut(s) 1140
CseI GACGC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 872
CviAII CATG 6 cut(s) 44, 491, 615, 806, 811, 887
CviQI GTAC 1 cut(s) 872
DdeI CTNAG 6 cut(s) 61, 66, 351, 720, 744, 1098
DpnI GATC 5 cut(s) 160, 602, 865, 1078, 1143
DpnII GATC 5 cut(s) 158, 600, 863, 1076, 1141
DraI TTTAAA 2 cut(s) 234, 648
Eam1104I CTCTTC 1 cut(s) 850
EarI CTCTTC 1 cut(s) 850
Ecl136II GAGCTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 293, 490
Eco147I AGGCCT 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 499
Eco32I GATATC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 455
Eco47III AGCGCT 1 cut(s) 1326
Eco53kI GAGCTC 1 cut(s) 497
Eco81I CCTNAGG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 298, 499
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 293, 490
EcoT22I ATGCAT 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 2 cut(s) 293, 490
FaeI CATG 6 cut(s) 47, 494, 618, 809, 814, 890
FalI AAGNNNNNCTT 2 cut(s) 912, 944
FaqI GGGAC 1 cut(s) 55
FatI CATG 6 cut(s) 43, 490, 614, 805, 810, 886
FauI CCCGC 1 cut(s) 80
FauNDI CATATG 1 cut(s) 197
FblI GTMKAC 2 cut(s) 1236, 1316
Fnu4HI GCNGC 3 cut(s) 681, 700, 1166
FokI GGATG 1 cut(s) 1367
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 3 cut(s) 681, 700, 1166
FspBI CTAG 4 cut(s) 6, 111, 294, 1262
GlaI GCGC 2 cut(s) 1025, 1326
GluI GCNGC 3 cut(s) 681, 700, 1166
GsaI CCCAGC 1 cut(s) 706
GsuI CTGGAG 2 cut(s) 321, 1031
HaeII RGCGCY 1 cut(s) 1328
HaeIII GGCC 1 cut(s) 298
HgaI GACGC 1 cut(s) 409
HhaI GCGC 2 cut(s) 1026, 1327
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 6 cut(s) 47, 494, 618, 809, 814, 890
Hin6I GCGC 2 cut(s) 1024, 1325
HinP1I GCGC 2 cut(s) 1024, 1325
HindIII AAGCTT 1 cut(s) 1386
HphI GGTGA 3 cut(s) 536, 610, 984
Hpy166II GTNNAC 3 cut(s) 712, 1237, 1317
Hpy188I TCNGA 9 cut(s) 27, 213, 221, 286, 745, 868, 902, 1101, 1146
Hpy188III TCNNGA 7 cut(s) 624, 719, 806, 953, 1048, 1255, 1276
Hpy8I GTNNAC 3 cut(s) 712, 1237, 1317
HpyAV CCTTC 3 cut(s) 632, 750, 812
HpyCH4III ACNGT 4 cut(s) 716, 797, 1297, 1369
HpyCH4IV ACGT 1 cut(s) 843
HpyCH4V TGCA 5 cut(s) 125, 571, 1292, 1300, 1341
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 6 cut(s) 61, 66, 351, 720, 744, 1098
HpySE526I ACGT 1 cut(s) 843
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 6 cut(s) 47, 494, 618, 809, 814, 890
HspAI GCGC 2 cut(s) 1024, 1325
Kzo9I GATC 5 cut(s) 158, 600, 863, 1076, 1141
LmnI GCTCC 5 cut(s) 494, 502, 829, 1072, 1322
Lsp1109I GCAGC 2 cut(s) 667, 711
LweI GCATC 5 cut(s) 193, 504, 558, 786, 903
MaeI CTAG 4 cut(s) 6, 111, 294, 1262
MaeII ACGT 1 cut(s) 843
MaeIII GTNAC 5 cut(s) 17, 399, 421, 673, 797
MalI GATC 5 cut(s) 160, 602, 865, 1078, 1143
MboI GATC 5 cut(s) 158, 600, 863, 1076, 1141
MboII GAAGA 9 cut(s) 32, 49, 341, 463, 577, 867, 922, 957, 1114
MfeI CAATTG 1 cut(s) 83
MflI RGATCY 1 cut(s) 863
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 4 cut(s) 83, 685, 1003, 1106
MluI ACGCGT 1 cut(s) 204
MlyI GAGTC 3 cut(s) 77, 731, 1252
Mph1103I ATGCAT 1 cut(s) 573
MslI CAYNNNNRTG 2 cut(s) 251, 1287
MspA1I CMGCKG 2 cut(s) 65, 702
MspR9I CCNGG 2 cut(s) 300, 501
MunI CAATTG 1 cut(s) 83
MvaI CCWGG 2 cut(s) 300, 501
MvnI CGCG 4 cut(s) 206, 275, 1024, 1026
MwoI GCNNNNNNNGC 1 cut(s) 677
NcoI CCATGG 1 cut(s) 490
NdeI CATATG 1 cut(s) 197
NdeII GATC 5 cut(s) 158, 600, 863, 1076, 1141
NlaIII CATG 6 cut(s) 47, 494, 618, 809, 814, 890
NmeAIII GCCGAG 1 cut(s) 741
NmuCI GTSAC 4 cut(s) 17, 421, 673, 797
NsiI ATGCAT 1 cut(s) 573
NspI RCATGY 1 cut(s) 618
OliI CACNNNNGTG 1 cut(s) 1287
PagI TCATGA 1 cut(s) 805
PceI AGGCCT 1 cut(s) 298
PfeI GAWTC 8 cut(s) 28, 107, 289, 620, 980, 1057, 1123, 1279
PkrI GCNGC 3 cut(s) 682, 701, 1167
PleI GAGTC 3 cut(s) 76, 730, 1252
PpsI GAGTC 3 cut(s) 76, 730, 1252
PshBI ATTAAT 1 cut(s) 312
PsiI TTATAA 2 cut(s) 174, 339
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 2 cut(s) 298, 499
PspFI CCCAGC 1 cut(s) 702
PspGI CCWGG 2 cut(s) 298, 499
PspPI GGNCC 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 863
PvuII CAGCTG 2 cut(s) 65, 702
RsaI GTAC 1 cut(s) 873
RsaNI GTAC 1 cut(s) 872
RseI CAYNNNNRTG 2 cut(s) 251, 1287
SacI GAGCTC 1 cut(s) 499
SatI GCNGC 3 cut(s) 681, 700, 1166
Sau3AI GATC 5 cut(s) 158, 600, 863, 1076, 1141
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 3 cut(s) 77, 731, 1252
ScrFI CCNGG 2 cut(s) 300, 501
SduI GDGCHC 1 cut(s) 499
SfaNI GCATC 5 cut(s) 193, 504, 558, 786, 903
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 251, 1287
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 4 cut(s) 83, 685, 1003, 1106
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 5 cut(s) 73, 228, 1022, 1165, 1287
SspI AATATT 1 cut(s) 170
SspMI CTAG 4 cut(s) 6, 111, 294, 1262
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 298
StyD4I CCNGG 2 cut(s) 298, 499
StyI CCWWGG 2 cut(s) 293, 490
TaaI ACNGT 4 cut(s) 716, 797, 1297, 1369
TaiI ACGT 1 cut(s) 846
TaqI TCGA 2 cut(s) 1140, 1394
TasI AATT 4 cut(s) 83, 685, 1003, 1106
TauI GCSGC 1 cut(s) 1168
TfiI GAWTC 8 cut(s) 28, 107, 289, 620, 980, 1057, 1123, 1279
TscAI CASTG 4 cut(s) 526, 678, 802, 1289
TseFI GTSAC 4 cut(s) 17, 421, 673, 797
TseI GCWGC 2 cut(s) 680, 699
Tsp45I GTSAC 4 cut(s) 17, 421, 673, 797
TspDTI ATGAA 8 cut(s) 32, 180, 255, 426, 463, 543, 567, 794
TspGWI ACGGA 2 cut(s) 992, 1320
TspRI CASTG 4 cut(s) 526, 678, 802, 1289
VpaK11BI GGWCC 1 cut(s) 455
VspI ATTAAT 1 cut(s) 312
XceI RCATGY 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XmaJI CCTAGG 1 cut(s) 293
XmiI GTMKAC 2 cut(s) 1236, 1316
XspI CTAG 4 cut(s) 6, 111, 294, 1262
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.