RLG00000002913

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001085
Physical Location & Seq
Reverse (-)
41674899 .. 41677634
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002913

Sequence Viewer

Length: 1281 bp
ATGAGAGGGCAGTACTGTTCCAGTGCAGTATTTTTGGTATTGCTTACCATCTTTGGTGTGAGCAGTGCTCAACTTCCCAAGTTGATGCCACAAGAATTTCCAGAGGATTTCATTATTCATGTTGATAGGGGTTCTAGCAACAGTGACACAAATGGAACAAGATGGGCAGTTCTAGTTGCTGGGTCCATGGGTTATGGAAACTATAGGCATCAGGCTGATGTGTGTCATGCATATCAAATTTTGAAGAACGGTGGACTGAAAGATGAAAACATCATTGTTTTCATGTACGATGACATTGCAAACAACCCCGAGAATCCAAGGCCGGGTGTCATCATCAACAAGCCCGACGGCGATGACGTCTACCATGGAGTTCCCAAGGATTATGCAGGAGAGAATGCTACTGCTGCTAATCTCTATGCTGTCATTCTTGGAGATAAATCTAATCTCTCGGGGGGAAGTGGCAAGGTTCTGAACAGCGGGCCAGACGACAATGTCTTTATCTATTACACCGACCATGGCGGGCCAGGGATCATTGGGATGCCTGAAGGCGATTATGTCTATGCCAATGATCTGGTAGATGTTCTGATAAAGAAGCATGAAGCTAATGCATACAAAAACATGGTATTTTACCTTGAAGCTTGTGAATCCGGGAGTATGTTCCAGGGTCTACTGCCGACAAATATAAGCATCTATGCAACCACAGCATCAAATGCAACTGAGAGTAGTTGGGGAACGTACTGCCCTGATATGACTCCTCCTCCACCTCCTGAATATGACACTTGCTTGGGTGATTTGTATAGTGTTTCTTGGATGGAGAATTGTGACTTACAAGATTTGCGCCAAGAGACTCTGGAAGAGCAATATCAATCGGTTAAATGGAGAACAGTAAATAATACTTATGGTTCTCATGTTATGCAATATGGAAATATGTATCAAACCTCAGATTTAGTATCCTTTTACTTGGGTGCAAATGATAACTCTTCCTCCATTGAAAGCAAATCGCCAGAGTCAATCTTAGAAGTTGTTGACAATCGCGATGCAGATCTTCTTCATCTTTGGCACAAGTTCCAACGCGCACCCGCTGGCTCTGAAATGAAGCAGGAAGCTAAAAGGGTCCTAGATGATGAAATTTCAAGTAGGCAGCGCATTGACCACAACATAAACCAAATCGAACAACTTGTGTTGGGATATTCAAGTAACGCTGTTCGTCCCGGGGGGCAAGCTCTTGTTGATGATTGGGACTGCTTTAAGTCAGTTGTAAGTCTTCTACTTTTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

427

Amino Acids

47.21

Weight (kDa)

4.57

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 54 - 322 2.5e-115 Peptidase C13 family
Legum_prodom PF20985 373 - 421 1.5e-09 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
AatII GACGTC 1 cut(s) 360
AccI GTMKAC 2 cut(s) 360, 667
AccII CGCG 2 cut(s) 1035, 1074
AciI CCGC 3 cut(s) 477, 519, 1080
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 3 cut(s) 95, 237, 1128
AcuI CTGAAG 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 3 cut(s) 14, 287, 737
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 5 cut(s) 244, 635, 992, 1134, 1194
AjnI CCWGG 2 cut(s) 523, 660
AluBI AGCT 4 cut(s) 602, 638, 1106, 1223
AluI AGCT 4 cut(s) 602, 638, 1106, 1223
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 1 cut(s) 536
Ama87I CYCGRG 3 cut(s) 308, 448, 1211
AoxI GGCC 3 cut(s) 320, 479, 521
ApeKI GCWGC 2 cut(s) 404, 1141
ApoI RAATTY 3 cut(s) 95, 237, 1128
AspLEI GCGC 3 cut(s) 840, 1076, 1146
AspS9I GGNCC 4 cut(s) 183, 479, 521, 1114
AsuC2I CCSGG 4 cut(s) 324, 649, 1212, 1213
AsuHPI GGTGA 1 cut(s) 800
AvaI CYCGRG 3 cut(s) 308, 448, 1211
AvaII GGWCC 2 cut(s) 183, 1114
BbsI GAAGAC 1 cut(s) 1256
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 391, 1153
BccI CCATC 3 cut(s) 56, 156, 805
BceAI ACGGC 1 cut(s) 364
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BciT130I CCWGG 2 cut(s) 525, 662
BciVI GTATCC 1 cut(s) 961
BcnI CCSGG 4 cut(s) 324, 649, 1212, 1213
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 3 cut(s) 135, 173, 1118
BfmI CTRYAG 1 cut(s) 202
BfuI GTATCC 1 cut(s) 961
BglII AGATCT 1 cut(s) 1042
BisI GCNGC 2 cut(s) 405, 1142
BlsI GCNGC 2 cut(s) 406, 1143
BmcAI AGTACT 1 cut(s) 14
Bme1390I CCNGG 6 cut(s) 324, 525, 649, 662, 1212, 1213
Bme18I GGWCC 2 cut(s) 183, 1114
BmeT110I CYCGRG 3 cut(s) 308, 448, 1211
BmgT120I GGNCC 4 cut(s) 183, 479, 521, 1114
BmiI GGNNCC 2 cut(s) 184, 1115
BmrFI CCNGG 6 cut(s) 324, 525, 649, 662, 1212, 1213
BmsI GCATC 6 cut(s) 75, 217, 528, 696, 713, 1027
BpiI GAAGAC 1 cut(s) 1256
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BpuMI CCSGG 4 cut(s) 324, 649, 1212, 1213
BsaBI GATNNNNATC 1 cut(s) 1041
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 9 cut(s) 186, 317, 364, 375, 514, 524, 661, 1211, 1212
BsaXI ACNNNNNCTCC 4 cut(s) 742, 772, 968, 998
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 1041
BseBI CCWGG 2 cut(s) 525, 662
BseDI CCNNGG 9 cut(s) 186, 317, 364, 375, 514, 524, 661, 1211, 1212
BseGI GGATG 2 cut(s) 543, 816
BseJI GATNNNNATC 1 cut(s) 1041
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 708, 954
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 2 cut(s) 744, 747
BseXI GCAGC 2 cut(s) 391, 1153
BseYI CCCAGC 1 cut(s) 179
BsgI GTGCAG 1 cut(s) 45
Bsh1236I CGCG 2 cut(s) 1035, 1074
BshFI GGCC 3 cut(s) 322, 481, 523
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 3 cut(s) 308, 448, 1211
BsiSI CCGG 3 cut(s) 323, 648, 1212
BslFI GGGAC 2 cut(s) 1194, 1253
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 839
BsmFI GGGAC 2 cut(s) 1194, 1253
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 3 cut(s) 322, 481, 523
BsoBI CYCGRG 3 cut(s) 308, 448, 1211
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 528, 568, 1042
Bsp19I CCATGG 3 cut(s) 186, 364, 514
Bsp68I TCGCGA 1 cut(s) 1035
BspACI CCGC 3 cut(s) 477, 519, 1080
BspANI GGCC 3 cut(s) 322, 481, 523
BspCNI CTCAG 2 cut(s) 709, 953
BspFNI CGCG 2 cut(s) 1035, 1074
BspLI GGNNCC 2 cut(s) 184, 1115
BspPI GGATC 1 cut(s) 536
BspQI GCTCTTC 1 cut(s) 849
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 9 cut(s) 186, 317, 364, 375, 514, 524, 661, 1211, 1212
BssMI GATC 3 cut(s) 528, 568, 1042
BssNI GRCGYC 1 cut(s) 357
BssT1I CCWWGG 5 cut(s) 186, 317, 364, 375, 514
Bst2UI CCWGG 2 cut(s) 525, 662
Bst4CI ACNGT 4 cut(s) 17, 143, 251, 886
Bst6I CTCTTC 2 cut(s) 849, 985
BstACI GRCGYC 1 cut(s) 357
BstAPI GCANNNNNTGC 1 cut(s) 710
BstC8I GCNNGC 4 cut(s) 479, 521, 1084, 1221
BstDEI CTNAG 3 cut(s) 717, 940, 1015
BstDSI CCRYGG 3 cut(s) 186, 364, 514
BstF5I GGATG 2 cut(s) 543, 816
BstFNI CGCG 2 cut(s) 1035, 1074
BstHHI GCGC 3 cut(s) 840, 1076, 1146
BstKTI GATC 3 cut(s) 531, 571, 1045
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 3 cut(s) 528, 568, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 404, 701, 710
BstNI CCWGG 2 cut(s) 525, 662
BstSCI CCNGG 6 cut(s) 322, 523, 647, 660, 1210, 1211
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 2 cut(s) 1035, 1074
BstV1I GCAGC 2 cut(s) 391, 1153
BstV2I GAAGAC 1 cut(s) 1256
BstX2I RGATCY 1 cut(s) 1042
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 1 cut(s) 1042
BsuI GTATCC 1 cut(s) 961
BsuRI GGCC 3 cut(s) 322, 481, 523
BtgI CCRYGG 3 cut(s) 186, 364, 514
BtgZI GCGATG 2 cut(s) 366, 1050
BtsCI GGATG 2 cut(s) 543, 816
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 3 cut(s) 28, 70, 148
BtuMI TCGCGA 1 cut(s) 1035
Cac8I GCNNGC 4 cut(s) 479, 521, 1084, 1221
CfoI GCGC 3 cut(s) 840, 1076, 1146
Cfr13I GGNCC 4 cut(s) 183, 479, 521, 1114
Cfr9I CCCGGG 1 cut(s) 1211
Csp6I GTAC 3 cut(s) 13, 286, 736
CviAII CATG 9 cut(s) 119, 187, 227, 283, 365, 515, 596, 619, 908
CviQI GTAC 3 cut(s) 13, 286, 736
DdeI CTNAG 3 cut(s) 717, 940, 1015
DpnI GATC 3 cut(s) 530, 570, 1044
DpnII GATC 3 cut(s) 528, 568, 1042
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 849, 985
EarI CTCTTC 2 cut(s) 849, 985
Eco130I CCWWGG 5 cut(s) 186, 317, 364, 375, 514
Eco47I GGWCC 2 cut(s) 183, 1114
Eco57I CTGAAG 1 cut(s) 564
Eco88I CYCGRG 3 cut(s) 308, 448, 1211
EcoO109I RGGNCCY 1 cut(s) 1114
EcoRII CCWGG 2 cut(s) 523, 660
EcoT14I CCWWGG 5 cut(s) 186, 317, 364, 375, 514
EcoT22I ATGCAT 2 cut(s) 232, 610
ErhI CCWWGG 5 cut(s) 186, 317, 364, 375, 514
FaeI CATG 9 cut(s) 122, 190, 230, 286, 368, 518, 599, 622, 911
FaqI GGGAC 2 cut(s) 1194, 1253
FatI CATG 9 cut(s) 118, 186, 226, 282, 364, 514, 595, 618, 907
FauI CCCGC 3 cut(s) 470, 512, 1087
FblI GTMKAC 2 cut(s) 360, 667
Fnu4HI GCNGC 2 cut(s) 405, 1142
FokI GGATG 2 cut(s) 550, 823
Fsp4HI GCNGC 2 cut(s) 405, 1142
FspBI CTAG 3 cut(s) 135, 173, 1118
GlaI GCGC 3 cut(s) 839, 1075, 1145
GluI GCNGC 2 cut(s) 405, 1142
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 3 cut(s) 322, 481, 523
HapII CCGG 3 cut(s) 323, 648, 1212
HhaI GCGC 3 cut(s) 840, 1076, 1146
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 9 cut(s) 122, 190, 230, 286, 368, 518, 599, 622, 911
Hin6I GCGC 3 cut(s) 838, 1074, 1144
HinP1I GCGC 3 cut(s) 838, 1074, 1144
HincII GTYRAC 1 cut(s) 1027
HindII GTYRAC 1 cut(s) 1027
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 5 cut(s) 313, 644, 751, 847, 1007
HpaII CCGG 3 cut(s) 323, 648, 1212
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 4 cut(s) 254, 361, 668, 1027
Hpy188I TCNGA 4 cut(s) 471, 585, 943, 1090
Hpy188III TCNNGA 4 cut(s) 101, 767, 851, 1034
Hpy8I GTNNAC 4 cut(s) 254, 361, 668, 1027
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 4 cut(s) 17, 143, 251, 886
HpyCH4IV ACGT 2 cut(s) 357, 734
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 701, 710
HpyF3I CTNAG 3 cut(s) 717, 940, 1015
HpySE526I ACGT 2 cut(s) 357, 734
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 9 cut(s) 122, 190, 230, 286, 368, 518, 599, 622, 911
HspAI GCGC 3 cut(s) 838, 1074, 1144
Kzo9I GATC 3 cut(s) 528, 568, 1042
LguI GCTCTTC 1 cut(s) 849
Lsp1109I GCAGC 2 cut(s) 391, 1153
LweI GCATC 6 cut(s) 75, 217, 528, 696, 713, 1027
MaeI CTAG 3 cut(s) 135, 173, 1118
MaeII ACGT 2 cut(s) 357, 734
MaeIII GTNAC 3 cut(s) 143, 821, 1196
MalI GATC 3 cut(s) 530, 570, 1044
MboI GATC 3 cut(s) 528, 568, 1042
MboII GAAGA 6 cut(s) 256, 866, 972, 1037, 1040, 1256
MflI RGATCY 1 cut(s) 1042
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 4 cut(s) 95, 237, 817, 1128
MlyI GAGTC 3 cut(s) 745, 841, 1016
MmeI TCCRAC 1 cut(s) 1093
MnlI CCTC 6 cut(s) 97, 765, 768, 774, 949, 994
Mph1103I ATGCAT 2 cut(s) 232, 610
MseI TTAA 2 cut(s) 873, 1248
MslI CAYNNNNRTG 1 cut(s) 536
MspA1I CMGCKG 2 cut(s) 477, 1082
MspI CCGG 3 cut(s) 323, 648, 1212
MspR9I CCNGG 6 cut(s) 324, 525, 649, 662, 1212, 1213
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 2 cut(s) 525, 662
MvnI CGCG 2 cut(s) 1035, 1074
MwoI GCNNNNNNNGC 3 cut(s) 404, 701, 710
NciI CCSGG 4 cut(s) 324, 649, 1212, 1213
NcoI CCATGG 3 cut(s) 186, 364, 514
NdeII GATC 3 cut(s) 528, 568, 1042
NlaIII CATG 9 cut(s) 122, 190, 230, 286, 368, 518, 599, 622, 911
NlaIV GGNNCC 2 cut(s) 184, 1115
NmuCI GTSAC 2 cut(s) 143, 821
NruI TCGCGA 1 cut(s) 1035
NsiI ATGCAT 2 cut(s) 232, 610
PciSI GCTCTTC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 313, 644
PflFI GACNNNGTC 1 cut(s) 491
PfoI TCCNGGA 1 cut(s) 647
PkrI GCNGC 2 cut(s) 406, 1143
PleI GAGTC 3 cut(s) 745, 841, 1015
PpsI GAGTC 3 cut(s) 745, 841, 1015
PpuMI RGGWCCY 1 cut(s) 1114
Psp5II RGGWCCY 1 cut(s) 1114
Psp6I CCWGG 2 cut(s) 523, 660
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 2 cut(s) 523, 660
PspN4I GGNNCC 2 cut(s) 184, 1115
PspPI GGNCC 4 cut(s) 183, 479, 521, 1114
PspPPI RGGWCCY 1 cut(s) 1114
PsuI RGATCY 1 cut(s) 1042
PsyI GACNNNGTC 1 cut(s) 491
RruI TCGCGA 1 cut(s) 1035
RsaI GTAC 3 cut(s) 14, 287, 737
RsaNI GTAC 3 cut(s) 13, 286, 736
RseI CAYNNNNRTG 1 cut(s) 536
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 2 cut(s) 873, 1248
SatI GCNGC 2 cut(s) 405, 1142
Sau3AI GATC 3 cut(s) 528, 568, 1042
Sau96I GGNCC 4 cut(s) 183, 479, 521, 1114
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 3 cut(s) 745, 841, 1016
ScrFI CCNGG 6 cut(s) 324, 525, 649, 662, 1212, 1213
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 6 cut(s) 75, 217, 528, 696, 713, 1027
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 183, 1114
SmaI CCCGGG 1 cut(s) 1213
SmiMI CAYNNNNRTG 1 cut(s) 536
Sse9I AATT 4 cut(s) 95, 237, 817, 1128
SsiI CCGC 3 cut(s) 477, 519, 1080
SspMI CTAG 3 cut(s) 135, 173, 1118
StyD4I CCNGG 6 cut(s) 322, 523, 647, 660, 1210, 1211
StyI CCWWGG 5 cut(s) 186, 317, 364, 375, 514
TaaI ACNGT 4 cut(s) 17, 143, 251, 886
TaiI ACGT 2 cut(s) 360, 737
TaqI TCGA 1 cut(s) 1170
TasI AATT 4 cut(s) 95, 237, 817, 1128
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 2 cut(s) 313, 644
Tru1I TTAA 2 cut(s) 873, 1248
Tru9I TTAA 2 cut(s) 873, 1248
TscAI CASTG 3 cut(s) 28, 70, 148
TseFI GTSAC 2 cut(s) 143, 821
TseI GCWGC 2 cut(s) 404, 1141
Tsp45I GTSAC 2 cut(s) 143, 821
TspDTI ATGAA 8 cut(s) 100, 107, 271, 279, 612, 1040, 1109, 1140
TspMI CCCGGG 1 cut(s) 1211
TspRI CASTG 3 cut(s) 28, 70, 148
Tth111I GACNNNGTC 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 183, 1114
XapI RAATTY 3 cut(s) 95, 237, 1128
XmaI CCCGGG 1 cut(s) 1211
XmiI GTMKAC 2 cut(s) 360, 667
XspI CTAG 3 cut(s) 135, 173, 1118
ZraI GACGTC 1 cut(s) 358
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 2 cut(s) 232, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.