Rh2CG454900

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001085
Physical Location & Seq
Reverse (-)
61878319 .. 61881033
2715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG454900.1

Sequence Viewer

Length: 1209 bp
ATGCAGGCTGATGTATGCCATGCATACCAGATACTTAAGAAAGGTGGACTCAAAGATGAAAACATTATTGTCTTCATGTATGATGATATTGCTAACAACACAGAAAACCCTAGACCTGGTGTCATTATCAACAAGCCAAACGGCAAGGATGTCTACCACGGAGTTCCCAAGGATTACACAGGAGATGATGTTAACTCACACAATTTCTACGCTGCTATTCTCGGAGAGAAAACTGCACTCAAAGGAGGAAGTGGCAAGGTTCTGGAGACTGGTCCAAATGACCATATTTTCATATATTACACTGATCATGGTGCTACAGGACTTCTTGGGATGCCTAGTGAAAGTGACTTTGTTTATGCTAAAGATCTGATACATGTGCTGAAAAAGAAGCACGCTGCTAAAGGTTACAAAAGCATGGTGTTTTACCTTGAAGCTTGTGAGTCTGGGAGTATGTTTGAGGGTTTGCTTCCAAAGAATATGAACATTTATGCTACTACAGCATCAAATGCAGAGGAGAGTAGTTATGCAACATACTGTGATGGTGATCCTGGTGTTCCTACAGAATTCGGTACTTGTTTGGGAGACTTGTATAGTATTTCCTGGTTGGAGGATTGCGATGCAAATGATCTGCGGAAAGAGACTTTTGGGGTTCAATATAAAAGGGTCCGAAGCAGAACAAATGAATCTCATGTTATGCAGTATGGAGATATGAGTCACATAAAGGAATTCCTCTACACTTACATGGGGGCAACTCCTAAAACTCATAGCTATGCTCCCTTCACAGCCTCGCCTTCGCAATCAATCTCAAGGACTGTTAGCCAGCGGGATGTAGCCCTCCTATATTTTCTGCAAAAGTTAAACAGAGCTCCAACTGGCTCTCATGAGAAGATCGAAGCTCAAAAGCAGCTACGTAAAGAAATTGCTCGAAGGAAACATGTGGACTACATCATAACCAAAATAGGGGAGCTTCTGTTTGGGACCGAGAGGAGCTCAAAAGAATTGATGAATGTCAGGCCTTCGGGACAACCCCTAGTGGATGACTGGGAGTGCTTCAAGATGTTTATAAGGACTTATGAGAGTCGCTGTGGAAAGCTATCGAAATATGGAATGAAATACACGCGAGCTTTTGCCAACATGTGCAATGCCGGGGTCAGCCTAGAGAAACTTGTTGCAGTGTCTGATCAAGCTTGTTCTAAGAAACATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

402

Amino Acids

45.09

Weight (kDa)

7.95

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 2 - 249 3.1e-105 Peptidase C13 family
Legum_prodom PF20985 301 - 397 5.5e-38 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1064
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 1120
AciI CCGC 2 cut(s) 631, 823
AclWI GGATC 1 cut(s) 539
AcsI RAATTY 2 cut(s) 563, 725
AfaI GTAC 1 cut(s) 571
AfiI CCNNNNNNNGG 2 cut(s) 116, 960
AflII CTTAAG 1 cut(s) 35
AflIII ACRYGT 4 cut(s) 373, 934, 1134, 1201
AgsI TTSAA 3 cut(s) 431, 653, 1054
AhdI GACNNNNNGTC 1 cut(s) 119
AjnI CCWGG 3 cut(s) 115, 547, 599
Alw21I GWGCWC 2 cut(s) 868, 992
Alw26I GTCTC 3 cut(s) 260, 576, 632
AlwI GGATC 1 cut(s) 539
AlwNI CAGNNNCTG 1 cut(s) 1178
AoxI GGCC 1 cut(s) 1013
ApeKI GCWGC 3 cut(s) 212, 395, 904
ApoI RAATTY 2 cut(s) 563, 725
AspS9I GGNCC 3 cut(s) 272, 664, 978
AsuC2I CCSGG 1 cut(s) 1147
AsuHPI GGTGA 1 cut(s) 554
AvaII GGWCC 3 cut(s) 272, 664, 978
BanII GRGCYC 2 cut(s) 868, 992
BbsI GAAGAC 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 868, 992
BbvI GCAGC 3 cut(s) 199, 382, 916
BccI CCATC 1 cut(s) 533
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 3 cut(s) 117, 549, 601
BclI TGATCA 2 cut(s) 304, 1180
BcnI CCSGG 1 cut(s) 1147
BcoDI GTCTC 3 cut(s) 260, 576, 632
BfaI CTAG 4 cut(s) 111, 336, 1031, 1157
BfmI CTRYAG 3 cut(s) 315, 495, 558
BfrI CTTAAG 1 cut(s) 35
BglII AGATCT 1 cut(s) 364
BisI GCNGC 3 cut(s) 213, 396, 905
BlsI GCNGC 3 cut(s) 214, 397, 906
Bme1390I CCNGG 4 cut(s) 117, 549, 601, 1147
Bme18I GGWCC 3 cut(s) 272, 664, 978
BmeRI GACNNNNNGTC 1 cut(s) 119
BmgT120I GGNCC 3 cut(s) 272, 664, 978
BmiI GGNNCC 2 cut(s) 665, 979
BmrFI CCNGG 4 cut(s) 117, 549, 601, 1147
BmrI ACTGGG 1 cut(s) 1051
BmsI GCATC 3 cut(s) 321, 509, 607
BmuI ACTGGG 1 cut(s) 1051
BpiI GAAGAC 1 cut(s) 64
BplI GAGNNNNNCTC 2 cut(s) 974, 1006
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 790
BpuMI CCSGG 1 cut(s) 1147
BsaAI YACGTR 1 cut(s) 911
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 157, 168, 1146
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 956, 986
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 960
Bse1I ACTGG 3 cut(s) 274, 877, 1046
Bse3DI GCAATG 1 cut(s) 1147
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 3 cut(s) 117, 549, 601
BseDI CCNNGG 3 cut(s) 157, 168, 1146
BseGI GGATG 4 cut(s) 154, 336, 832, 1042
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 2 cut(s) 116, 960
BseMI GCAATG 1 cut(s) 1147
BseNI ACTGG 3 cut(s) 274, 877, 1046
BseRI GAGGAG 2 cut(s) 527, 1000
BseXI GCAGC 3 cut(s) 199, 382, 916
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 1120
BshFI GGCC 1 cut(s) 1015
BsiHKAI GWGCWC 2 cut(s) 868, 992
BsiSI CCGG 1 cut(s) 1146
BslFI GGGAC 2 cut(s) 991, 1035
BslI CCNNNNNNNGG 2 cut(s) 116, 960
BsmAI GTCTC 3 cut(s) 260, 576, 632
BsmFI GGGAC 2 cut(s) 991, 1035
BsnI GGCC 1 cut(s) 1015
Bsp1286I GDGCHC 2 cut(s) 868, 992
Bsp143I GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
BspACI CCGC 2 cut(s) 631, 823
BspANI GGCC 1 cut(s) 1015
BspFNI CGCG 1 cut(s) 1120
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 2 cut(s) 665, 979
BspPI GGATC 1 cut(s) 539
BspTI CTTAAG 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 1147
BsrI ACTGG 3 cut(s) 274, 877, 1046
BssECI CCNNGG 3 cut(s) 157, 168, 1146
BssMI GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 117, 549, 601
Bst4CI ACNGT 2 cut(s) 536, 814
BstAFI CTTAAG 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 911
BstC8I GCNNGC 4 cut(s) 6, 393, 821, 1122
BstDEI CTNAG 1 cut(s) 1194
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 4 cut(s) 154, 336, 832, 1042
BstFNI CGCG 1 cut(s) 1120
BstKTI GATC 6 cut(s) 307, 367, 547, 628, 891, 1183
BstMAI GTCTC 3 cut(s) 260, 576, 632
BstMBI GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 497, 506
BstNI CCWGG 3 cut(s) 117, 549, 601
BstNSI RCATGY 4 cut(s) 377, 938, 1138, 1205
BstSCI CCNGG 4 cut(s) 115, 547, 599, 1145
BstSFI CTRYAG 3 cut(s) 315, 495, 558
BstSNI TACGTA 1 cut(s) 911
BstUI CGCG 1 cut(s) 1120
BstV1I GCAGC 3 cut(s) 199, 382, 916
BstV2I GAAGAC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BsuRI GGCC 1 cut(s) 1015
BtgI CCRYGG 1 cut(s) 157
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 4 cut(s) 154, 336, 832, 1042
BtsI GCAGTG 1 cut(s) 1179
BtsIMutI CAGTG 2 cut(s) 300, 1179
Cac8I GCNNGC 4 cut(s) 6, 393, 821, 1122
CaiI CAGNNNCTG 1 cut(s) 1178
CciI TCATGA 1 cut(s) 880
Cfr13I GGNCC 3 cut(s) 272, 664, 978
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 1 cut(s) 570
CviQI GTAC 1 cut(s) 570
DdeI CTNAG 1 cut(s) 1194
DpnI GATC 6 cut(s) 306, 366, 546, 627, 890, 1182
DpnII GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
DriI GACNNNNNGTC 1 cut(s) 119
Eam1105I GACNNNNNGTC 1 cut(s) 119
Ecl136II GAGCTC 2 cut(s) 866, 990
Eco105I TACGTA 1 cut(s) 911
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 1015
Eco24I GRGCYC 2 cut(s) 868, 992
Eco47I GGWCC 3 cut(s) 272, 664, 978
Eco53kI GAGCTC 2 cut(s) 866, 990
EcoICRI GAGCTC 2 cut(s) 866, 990
EcoRI GAATTC 2 cut(s) 563, 725
EcoRII CCWGG 3 cut(s) 115, 547, 599
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 25
EcoT38I GRGCYC 2 cut(s) 868, 992
ErhI CCWWGG 1 cut(s) 168
FaqI GGGAC 2 cut(s) 991, 1035
FauI CCCGC 1 cut(s) 816
FbaI TGATCA 2 cut(s) 304, 1180
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 213, 396, 905
FokI GGATG 4 cut(s) 161, 343, 839, 1049
FriOI GRGCYC 2 cut(s) 868, 992
Fsp4HI GCNGC 3 cut(s) 213, 396, 905
FspBI CTAG 4 cut(s) 111, 336, 1031, 1157
GluI GCNGC 3 cut(s) 213, 396, 905
GsuI CTGGAG 1 cut(s) 284
HaeIII GGCC 1 cut(s) 1015
HapII CCGG 1 cut(s) 1146
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 432, 1185
HinfI GANTC 5 cut(s) 48, 440, 683, 712, 1078
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 1 cut(s) 1146
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 4 cut(s) 47, 154, 193, 940
Hpy188I TCNGA 4 cut(s) 224, 369, 668, 1180
Hpy188III TCNNGA 4 cut(s) 263, 881, 1020, 1054
Hpy8I GTNNAC 4 cut(s) 47, 154, 193, 940
HpyAV CCTTC 4 cut(s) 787, 801, 921, 1026
HpyCH4III ACNGT 2 cut(s) 536, 814
HpyCH4IV ACGT 1 cut(s) 910
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 506
HpyF3I CTNAG 1 cut(s) 1194
HpySE526I ACGT 1 cut(s) 910
Ksp22I TGATCA 2 cut(s) 304, 1180
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
LmnI GCTCC 4 cut(s) 778, 871, 964, 987
Lsp1109I GCAGC 3 cut(s) 199, 382, 916
LweI GCATC 3 cut(s) 321, 509, 607
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 4 cut(s) 111, 336, 1031, 1157
MaeII ACGT 1 cut(s) 910
MaeIII GTNAC 3 cut(s) 344, 404, 713
MalI GATC 6 cut(s) 306, 366, 546, 627, 890, 1182
MboI GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
MboII GAAGA 2 cut(s) 64, 898
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 2 cut(s) 868, 992
MluCI AATT 5 cut(s) 202, 563, 725, 918, 998
MlyI GAGTC 4 cut(s) 42, 449, 721, 1087
MmeI TCCRAC 2 cut(s) 585, 893
MnlI CCTC 8 cut(s) 239, 451, 505, 601, 740, 796, 845, 978
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 3 cut(s) 36, 192, 857
MslI CAYNNNNRTG 2 cut(s) 740, 768
MspA1I CMGCKG 1 cut(s) 823
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 1 cut(s) 1146
MspR9I CCNGG 4 cut(s) 117, 549, 601, 1147
MvaI CCWGG 3 cut(s) 117, 549, 601
MvnI CGCG 1 cut(s) 1120
MwoI GCNNNNNNNGC 2 cut(s) 497, 506
NciI CCSGG 1 cut(s) 1147
NdeII GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
NlaIV GGNNCC 2 cut(s) 665, 979
NmuCI GTSAC 2 cut(s) 344, 713
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 4 cut(s) 377, 938, 1138, 1205
PagI TCATGA 1 cut(s) 880
PceI AGGCCT 1 cut(s) 1015
PciI ACATGT 4 cut(s) 373, 934, 1134, 1201
PfeI GAWTC 1 cut(s) 683
PkrI GCNGC 3 cut(s) 214, 397, 906
PleI GAGTC 4 cut(s) 42, 448, 720, 1086
PpsI GAGTC 4 cut(s) 42, 448, 720, 1086
Ppu21I YACGTR 1 cut(s) 911
PscI ACATGT 4 cut(s) 373, 934, 1134, 1201
PsiI TTATAA 1 cut(s) 1064
Psp124BI GAGCTC 2 cut(s) 868, 992
Psp6I CCWGG 3 cut(s) 115, 547, 599
PspGI CCWGG 3 cut(s) 115, 547, 599
PspN4I GGNNCC 2 cut(s) 665, 979
PspPI GGNCC 3 cut(s) 272, 664, 978
PstNI CAGNNNCTG 1 cut(s) 1178
PsuI RGATCY 1 cut(s) 364
RsaI GTAC 1 cut(s) 571
RsaNI GTAC 1 cut(s) 570
RseI CAYNNNNRTG 2 cut(s) 740, 768
SacI GAGCTC 2 cut(s) 868, 992
SaqAI TTAA 3 cut(s) 36, 192, 857
SatI GCNGC 3 cut(s) 213, 396, 905
Sau3AI GATC 6 cut(s) 304, 364, 544, 625, 888, 1180
Sau96I GGNCC 3 cut(s) 272, 664, 978
SchI GAGTC 4 cut(s) 42, 449, 721, 1087
ScrFI CCNGG 4 cut(s) 117, 549, 601, 1147
SduI GDGCHC 2 cut(s) 868, 992
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 3 cut(s) 321, 509, 607
SfcI CTRYAG 3 cut(s) 315, 495, 558
SinI GGWCC 3 cut(s) 272, 664, 978
SmiMI CAYNNNNRTG 2 cut(s) 740, 768
SmlI CTYRAG 2 cut(s) 35, 805
SmoI CTYRAG 2 cut(s) 35, 805
SnaBI TACGTA 1 cut(s) 911
Sse9I AATT 5 cut(s) 202, 563, 725, 918, 998
SseBI AGGCCT 1 cut(s) 1015
SsiI CCGC 2 cut(s) 631, 823
SspMI CTAG 4 cut(s) 111, 336, 1031, 1157
SstI GAGCTC 2 cut(s) 868, 992
StuI AGGCCT 1 cut(s) 1015
StyD4I CCNGG 4 cut(s) 115, 547, 599, 1145
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 536, 814
TaiI ACGT 1 cut(s) 913
TaqI TCGA 3 cut(s) 891, 925, 1097
TaqII GACCGA 1 cut(s) 995
TasI AATT 5 cut(s) 202, 563, 725, 918, 998
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 3 cut(s) 36, 192, 857
Tru9I TTAA 3 cut(s) 36, 192, 857
TscAI CASTG 2 cut(s) 307, 1179
TseFI GTSAC 2 cut(s) 344, 713
TseI GCWGC 3 cut(s) 212, 395, 904
Tsp45I GTSAC 2 cut(s) 344, 713
TspDTI ATGAA 7 cut(s) 64, 72, 280, 494, 696, 1019, 1124
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 2 cut(s) 307, 1179
Vha464I CTTAAG 1 cut(s) 35
VpaK11BI GGWCC 3 cut(s) 272, 664, 978
XapI RAATTY 2 cut(s) 563, 725
XceI RCATGY 4 cut(s) 377, 938, 1138, 1205
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 4 cut(s) 111, 336, 1031, 1157
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.