Rh2CG455000

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001085
Physical Location & Seq
Reverse (-)
61885648 .. 61887239
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG455000.1

Sequence Viewer

Length: 879 bp
ATGATTGGTAGCGGCAAGGTTCTAAATAGCGGTCCAAACGACCACGTTTTCATTTATTACGCTGACCATGGCAACCCTGGCGGGATGGTTGGCATGCCAATTGAAGGTGATTACGTATATGCTAAAGATCTCATAGATGTGCTGAAGAAGAAGCACGGTGCAAAAGGTTACAAAAGAATGGTGTTCTTCATGGAAGCTTGCGAGTCTGGGAGCTTGTTTGAGGGCCTCCTTCCCAACAATATAAGCATATACGCAACTACAGCAGCAAATTCAAAAGAGAGCAGTTGGGGATTCTATTGTCCTGGAGACTTCCCTAGTCCTCCTCCAGGGTATGACGTTTGCTTGGGAGACTTGTATAGTATTTCTTGGCTTGAGGATTGTGACAAGCACGACTTGAGCAAAGAAACTTTGGCGAAGCAATATGAAGTGGTCCAAAGGAGAACAGCAAATGGCTACTTAGATTCAAGCCATGTCATGCAATTTGGGAATAAGAGACAATGCGAGGATTTCATCTTCACTTACATGGGTACAAATCCTGAAAATGATAACTATACTTACTTCAAGTACACGGCATCACCATCGACCTCAAGGCCAAGGGTTGTCAGCCAACGCATCGCAGACCTCCTCCATCTTCGGTACAAGAATATGAATTTGGATGCTGTTCAGTTCGACAATGCCCCTGATAGCTCCGATGTGAAGCTTGAAGCTCACAAACAGCTCATTGATGAAATTTCTCGGAGGAAAAAGGTGGATTATAACGTAAAGCAGATGGGGAAACTTTTGTTTGGGTATGACAAGAGTTCAGAAGTGATGAAGAATGTTAGGACTCCGGGGGAACCTCTAGTAGATGATTGGGACTGCCTTAAGATGCTTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

292

Amino Acids

33.08

Weight (kDa)

6.0

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 2 - 177 1.6e-59 Peptidase C13 family
Legum_prodom PF20985 238 - 291 1e-14 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AciI CCGC 3 cut(s) 12, 30, 81
AcsI RAATTY 3 cut(s) 268, 649, 729
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 3 cut(s) 529, 566, 638
AfiI CCNNNNNNNGG 2 cut(s) 104, 326
AflII CTTAAG 2 cut(s) 863, 872
AgsI TTSAA 5 cut(s) 104, 273, 465, 562, 704
AjnI CCWGG 3 cut(s) 76, 301, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AluBI AGCT 6 cut(s) 197, 213, 687, 700, 707, 718
AluI AGCT 6 cut(s) 197, 213, 687, 700, 707, 718
Alw26I GTCTC 3 cut(s) 300, 342, 487
AoxI GGCC 2 cut(s) 223, 590
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 3 cut(s) 268, 649, 729
AspS9I GGNCC 3 cut(s) 32, 223, 430
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 2 cut(s) 119, 567
AvaII GGWCC 2 cut(s) 32, 430
BbvI GCAGC 1 cut(s) 275
BccI CCATC 4 cut(s) 79, 586, 636, 763
BceAI ACGGC 1 cut(s) 585
BcgI CGANNNNNNTGC 2 cut(s) 561, 595
BciT130I CCWGG 3 cut(s) 78, 303, 327
BcnI CCSGG 1 cut(s) 831
BcoDI GTCTC 3 cut(s) 300, 342, 487
BfaI CTAG 2 cut(s) 315, 842
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 2 cut(s) 863, 872
BglII AGATCT 1 cut(s) 127
BisI GCNGC 2 cut(s) 13, 264
BlsI GCNGC 2 cut(s) 14, 265
Bme1390I CCNGG 4 cut(s) 78, 303, 327, 831
Bme18I GGWCC 2 cut(s) 32, 430
BmgT120I GGNCC 3 cut(s) 32, 223, 430
BmiI GGNNCC 1 cut(s) 837
BmrFI CCNGG 4 cut(s) 78, 303, 327, 831
BmsI GCATC 4 cut(s) 581, 621, 646, 858
BpmI CTGGAG 2 cut(s) 309, 324
BpuEI CTTGAG 3 cut(s) 392, 415, 571
BpuMI CCSGG 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 115
BsaJI CCNNGG 5 cut(s) 67, 76, 326, 593, 830
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 326
BseBI CCWGG 3 cut(s) 78, 303, 327
BseDI CCNNGG 5 cut(s) 67, 76, 326, 593, 830
BseGI GGATG 2 cut(s) 90, 661
BseLI CCNNNNNNNGG 2 cut(s) 104, 326
BseRI GAGGAG 2 cut(s) 312, 614
BseXI GCAGC 1 cut(s) 275
BshFI GGCC 2 cut(s) 225, 592
BsiSI CCGG 1 cut(s) 830
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 2 cut(s) 104, 326
BsmAI GTCTC 3 cut(s) 300, 342, 487
BsmFI GGGAC 1 cut(s) 869
BsnI GGCC 2 cut(s) 225, 592
Bsp143I GATC 1 cut(s) 127
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 3 cut(s) 12, 30, 81
BspANI GGCC 2 cut(s) 225, 592
BspLI GGNNCC 1 cut(s) 837
BspTI CTTAAG 2 cut(s) 863, 872
BssECI CCNNGG 5 cut(s) 67, 76, 326, 593, 830
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 2 cut(s) 67, 593
Bst2UI CCWGG 3 cut(s) 78, 303, 327
Bst4CI ACNGT 1 cut(s) 158
BstAFI CTTAAG 2 cut(s) 863, 872
BstBAI YACGTR 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 95, 199
BstDEI CTNAG 1 cut(s) 457
BstDSI CCRYGG 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 90, 661
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 3 cut(s) 300, 342, 487
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 78, 260
BstNI CCWGG 3 cut(s) 78, 303, 327
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 4 cut(s) 76, 301, 325, 829
BstSFI CTRYAG 1 cut(s) 258
BstSNI TACGTA 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 275
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 2 cut(s) 225, 592
BtgI CCRYGG 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 598
BtsCI GGATG 2 cut(s) 90, 661
Cac8I GCNNGC 2 cut(s) 95, 199
Cfr13I GGNCC 3 cut(s) 32, 223, 430
Csp6I GTAC 3 cut(s) 528, 565, 637
CviAII CATG 6 cut(s) 68, 94, 190, 470, 475, 523
CviQI GTAC 3 cut(s) 528, 565, 637
DdeI CTNAG 1 cut(s) 457
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco105I TACGTA 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 67, 593
Eco47I GGWCC 2 cut(s) 32, 430
Eco57I CTGAAG 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 223
EcoRII CCWGG 3 cut(s) 76, 301, 325
EcoT14I CCWWGG 2 cut(s) 67, 593
ErhI CCWWGG 2 cut(s) 67, 593
FaeI CATG 6 cut(s) 71, 97, 193, 473, 478, 526
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 869
FatI CATG 6 cut(s) 67, 93, 189, 469, 474, 522
FauI CCCGC 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 13, 264
FokI GGATG 2 cut(s) 97, 668
Fsp4HI GCNGC 2 cut(s) 13, 264
FspBI CTAG 2 cut(s) 315, 842
GluI GCNGC 2 cut(s) 13, 264
GsuI CTGGAG 2 cut(s) 309, 324
HaeIII GGCC 2 cut(s) 225, 592
HapII CCGG 1 cut(s) 830
Hin1II CATG 6 cut(s) 71, 97, 193, 473, 478, 526
HindIII AAGCTT 2 cut(s) 195, 698
HinfI GANTC 4 cut(s) 203, 291, 461, 826
HpaII CCGG 1 cut(s) 830
HphI GGTGA 2 cut(s) 119, 567
Hpy166II GTNNAC 1 cut(s) 567
Hpy188I TCNGA 3 cut(s) 691, 738, 805
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 1 cut(s) 567
HpyAV CCTTC 2 cut(s) 98, 239
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 4 cut(s) 45, 114, 336, 759
HpyCH4V TGCA 2 cut(s) 161, 478
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 260
HpyF3I CTNAG 1 cut(s) 457
HpySE526I ACGT 4 cut(s) 45, 114, 336, 759
Hsp92II CATG 6 cut(s) 71, 97, 193, 473, 478, 526
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 210, 692
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 4 cut(s) 581, 621, 646, 858
MaeI CTAG 2 cut(s) 315, 842
MaeII ACGT 4 cut(s) 45, 114, 336, 759
MaeIII GTNAC 2 cut(s) 167, 380
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 6 cut(s) 157, 160, 178, 505, 623, 826
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 127
MluCI AATT 5 cut(s) 99, 268, 479, 649, 729
MlyI GAGTC 2 cut(s) 212, 820
MseI TTAA 2 cut(s) 864, 873
MslI CAYNNNNRTG 2 cut(s) 137, 521
MspCI CTTAAG 2 cut(s) 863, 872
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 4 cut(s) 78, 303, 327, 831
MunI CAATTG 1 cut(s) 99
MvaI CCWGG 3 cut(s) 78, 303, 327
MwoI GCNNNNNNNGC 2 cut(s) 78, 260
NciI CCSGG 1 cut(s) 831
NcoI CCATGG 1 cut(s) 67
NdeII GATC 1 cut(s) 127
NlaIII CATG 6 cut(s) 71, 97, 193, 473, 478, 526
NlaIV GGNNCC 1 cut(s) 837
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 97
PaeI GCATGC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 291, 461
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 2 cut(s) 14, 265
PleI GAGTC 2 cut(s) 211, 820
PpsI GAGTC 2 cut(s) 211, 820
Ppu21I YACGTR 1 cut(s) 115
PsiI TTATAA 1 cut(s) 756
Psp6I CCWGG 3 cut(s) 76, 301, 325
PspGI CCWGG 3 cut(s) 76, 301, 325
PspN4I GGNNCC 1 cut(s) 837
PspPI GGNCC 3 cut(s) 32, 223, 430
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 529, 566, 638
RsaNI GTAC 3 cut(s) 528, 565, 637
RseI CAYNNNNRTG 2 cut(s) 137, 521
SaqAI TTAA 2 cut(s) 864, 873
SatI GCNGC 2 cut(s) 13, 264
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 3 cut(s) 32, 223, 430
SchI GAGTC 2 cut(s) 212, 820
ScrFI CCNGG 4 cut(s) 78, 303, 327, 831
SfaNI GCATC 4 cut(s) 581, 621, 646, 858
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 2 cut(s) 32, 430
SmiMI CAYNNNNRTG 2 cut(s) 137, 521
SmlI CTYRAG 5 cut(s) 371, 394, 586, 863, 872
SmoI CTYRAG 5 cut(s) 371, 394, 586, 863, 872
SnaBI TACGTA 1 cut(s) 115
SphI GCATGC 1 cut(s) 97
Sse9I AATT 5 cut(s) 99, 268, 479, 649, 729
SsiI CCGC 3 cut(s) 12, 30, 81
SspMI CTAG 2 cut(s) 315, 842
StyD4I CCNGG 4 cut(s) 76, 301, 325, 829
StyI CCWWGG 2 cut(s) 67, 593
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 4 cut(s) 48, 117, 339, 762
TaqI TCGA 2 cut(s) 581, 669
TasI AATT 5 cut(s) 99, 268, 479, 649, 729
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 291, 461
Tru1I TTAA 2 cut(s) 864, 873
Tru9I TTAA 2 cut(s) 864, 873
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 7 cut(s) 40, 178, 438, 499, 662, 741, 827
Vha464I CTTAAG 2 cut(s) 863, 872
VpaK11BI GGWCC 2 cut(s) 32, 430
XagI CCTNNNNNAGG 1 cut(s) 324
XapI RAATTY 3 cut(s) 268, 649, 729
XceI RCATGY 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XspI CTAG 2 cut(s) 315, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.