RchiOBHm_Chr7g0221051

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001085
Physical Location & Seq
Reverse (-)
41951643 .. 41954469
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19783

Sequence Viewer

Length: 1398 bp
ATGATCCTAATCACAAGGCCTCGCTATGTTTTACTATTCCTTGCATTACTGAGTTTGACATCCATTTCACCATCATCATCATCAAAAGTGGAAGATATCAGCAACGGAACAAGATGGGCAGTTCTGATTGCTGGGTCAAGAGGATATGATAACTATAGGCATCAGGCTGATGTATGCCATGCATACCAGATACTGAAGAAAGGTGGACTCAAAGATGAGAATATCATTGTGTTCATGTATGACGATATTGCATTCAACCCAAAAAATCCTAGACCTGGTGTCATTATCAACAAGCCAGGTGGAAATGATGTTTATCAAGGAGTTCCCAAGGACTATACAGGAAAGGATATTAATACTCACAACTTCTATGCTGTTCTTCTTGGCAACATAAGTGGCCTCACTGGTGGTAGAGGCAAGGTTCTAAATAGCGGTCCAAACGACCACGTTTTCATTTATTACGCTGACCATGGCAGCCCTGGGATGGTTGGCATGCCAATTGCAGGTGATTACGTATATGCTAAAGATCTCATAGATGTGCTGAAGAAGAAGCACGATGCCAAAGGTTACAAAAGCATGGTGTTTTATATGGAAGCTTGCGAGTCTGGGAGCCTGTTTGAGGGCATCCTTCCCAACAATATAAGCATATACGCAACTACAGCAGCAAATTCAAAAGAGAGCAGTTGGGGATTCTATTGTCCTGGAGACTTCCCTAGTCCTCCTCCAGGATATGACGTTTGCTTGGGAGACTTGTATAGTATTTCTTGGCTTGAGGATTGTGACAAGCATGACTTGAGGAAAGAAACTTTGGCGAAGCAATATGAAGTGGTCCGAAGGAGAACAGCAAATGGCTACTTAGATTCAAGCCATGTCATGCAATTTGGGAATAAGAGACAAAGCGAGGATTTCATCTTCACTTACATGGGTACAAATCCTGAAAATGATAACTATACTTACTTCAAGTACACGGCATCACCAGCGACCTCAAGGCCAAGGGTTGTCAGCCAACGCAACGCAGACCTCCTCCATCTTCGGTACAAGTTCGACAATGCTCCCGATGGCTCCGATGTGAAGCTTGAAGCTCACAAACAGCTCATTGATGAAATTTCTCGGAGGAAAAAGGTGGATCATAACATAAAGCAGATAGGGAAGCTTTTGTTTGGGTATGACAAGAGTTCAGAAGTGATGAAGAATGTTAGGACTCCGGGGGAACCTCTAGTAGATGATTGGGACTGCTTTAAGATGCTTGTGAAAACTTATGAGAAACACTGTGGATTTTTATCAAGTTATGGAAGGAAACACACCAGAGCTATTGCCAACATGTGCAATACTGGAGTTACGCCGGAACAAATGGCTGCTGCATGTGTTCAAACCTGTCATATGAAATCCCCTCTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

465

Amino Acids

52.14

Weight (kDa)

8.47

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 38 - 309 2.8e-113 Peptidase C13 family
Legum_prodom PF20985 362 - 458 8.4e-39 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 491
Acc36I ACCTGC 1 cut(s) 491
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 1131
AcsI RAATTY 2 cut(s) 664, 1101
AcuI CTGAAG 2 cut(s) 215, 560
AfaI GTAC 3 cut(s) 925, 962, 1034
AfiI CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
AflIII ACRYGT 1 cut(s) 1317
AgsI TTSAA 6 cut(s) 256, 669, 861, 958, 1076, 1367
AhdI GACNNNNNGTC 1 cut(s) 278
AjnI CCWGG 5 cut(s) 274, 295, 475, 697, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AluBI AGCT 6 cut(s) 593, 1072, 1079, 1090, 1150, 1307
AluI AGCT 6 cut(s) 593, 1072, 1079, 1090, 1150, 1307
Alw26I GTCTC 3 cut(s) 696, 738, 883
AlwI GGATC 1 cut(s) 1131
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 3 cut(s) 17, 394, 986
ApeKI GCWGC 4 cut(s) 471, 659, 1352, 1355
ApoI RAATTY 2 cut(s) 664, 1101
AseI ATTAAT 1 cut(s) 351
AspS9I GGNCC 2 cut(s) 431, 826
AsuC2I CCSGG 1 cut(s) 1203
AsuHPI GGTGA 3 cut(s) 60, 515, 963
AvaII GGWCC 2 cut(s) 431, 826
BbvI GCAGC 4 cut(s) 483, 671, 1339, 1342
BccI CCATC 5 cut(s) 79, 108, 475, 1032, 1049
BceAI ACGGC 1 cut(s) 981
BciT130I CCWGG 5 cut(s) 276, 297, 477, 699, 723
BcnI CCSGG 1 cut(s) 1203
BcoDI GTCTC 3 cut(s) 696, 738, 883
BfaI CTAG 3 cut(s) 270, 711, 1214
BfmI CTRYAG 2 cut(s) 154, 654
BfuAI ACCTGC 1 cut(s) 491
BglII AGATCT 1 cut(s) 523
BisI GCNGC 4 cut(s) 472, 660, 1353, 1356
BlsI GCNGC 4 cut(s) 473, 661, 1354, 1357
Bme1390I CCNGG 6 cut(s) 276, 297, 477, 699, 723, 1203
Bme18I GGWCC 2 cut(s) 431, 826
BmeRI GACNNNNNGTC 1 cut(s) 278
BmgT120I GGNCC 2 cut(s) 431, 826
BmiI GGNNCC 3 cut(s) 608, 1060, 1209
BmrFI CCNGG 6 cut(s) 276, 297, 477, 699, 723, 1203
BmsI GCATC 5 cut(s) 169, 544, 630, 977, 1230
BpmI CTGGAG 3 cut(s) 705, 720, 1350
BpuEI CTTGAG 3 cut(s) 788, 811, 967
BpuMI CCSGG 1 cut(s) 1203
BsaAI YACGTR 1 cut(s) 511
BsaBI GATNNNNATC 3 cut(s) 8, 312, 1276
BsaJI CCNNGG 6 cut(s) 327, 466, 475, 476, 989, 1202
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
Bse1I ACTGG 2 cut(s) 406, 1333
Bse8I GATNNNNATC 3 cut(s) 8, 312, 1276
BseBI CCWGG 5 cut(s) 276, 297, 477, 699, 723
BseDI CCNNGG 6 cut(s) 327, 466, 475, 476, 989, 1202
BseGI GGATG 3 cut(s) 59, 486, 621
BseJI GATNNNNATC 3 cut(s) 8, 312, 1276
BseLI CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 406, 1333
BseRI GAGGAG 2 cut(s) 708, 1010
BseXI GCAGC 4 cut(s) 483, 671, 1339, 1342
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 3 cut(s) 19, 396, 988
BsiSI CCGG 2 cut(s) 1202, 1340
BslFI GGGAC 1 cut(s) 1241
BslI CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
BsmAI GTCTC 3 cut(s) 696, 738, 883
BsmFI GGGAC 1 cut(s) 1241
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 3 cut(s) 19, 396, 988
Bsp143I GATC 3 cut(s) 3, 523, 1123
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 1 cut(s) 429
BspANI GGCC 3 cut(s) 19, 396, 988
BspCNI CTCAG 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 608, 1060, 1209
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 1 cut(s) 1131
BsrI ACTGG 2 cut(s) 406, 1333
BssECI CCNNGG 6 cut(s) 327, 466, 475, 476, 989, 1202
BssMI GATC 3 cut(s) 3, 523, 1123
BssT1I CCWWGG 3 cut(s) 327, 466, 989
Bst2UI CCWGG 5 cut(s) 276, 297, 477, 699, 723
Bst4CI ACNGT 1 cut(s) 1268
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 2 cut(s) 491, 595
BstDEI CTNAG 2 cut(s) 50, 853
BstDSI CCRYGG 1 cut(s) 466
BstENI CCTNNNNNAGG 2 cut(s) 614, 720
BstF5I GGATG 3 cut(s) 59, 486, 621
BstKTI GATC 3 cut(s) 6, 526, 1126
BstMAI GTCTC 3 cut(s) 696, 738, 883
BstMBI GATC 3 cut(s) 3, 523, 1123
BstMWI GCNNNNNNNGC 2 cut(s) 656, 974
BstNI CCWGG 5 cut(s) 276, 297, 477, 699, 723
BstNSI RCATGY 3 cut(s) 493, 1321, 1362
BstSCI CCNGG 6 cut(s) 274, 295, 475, 697, 721, 1201
BstSFI CTRYAG 2 cut(s) 154, 654
BstSNI TACGTA 1 cut(s) 511
BstV1I GCAGC 4 cut(s) 483, 671, 1339, 1342
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 3 cut(s) 19, 396, 988
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 3 cut(s) 59, 486, 621
BtsIMutI CAGTG 2 cut(s) 399, 1264
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 2 cut(s) 491, 595
CaiI CAGNNNCTG 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 431, 826
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 3 cut(s) 924, 961, 1033
CspCI CAANNNNNGTGG 4 cut(s) 280, 315, 373, 408
CviQI GTAC 3 cut(s) 924, 961, 1033
DdeI CTNAG 2 cut(s) 50, 853
DpnI GATC 3 cut(s) 5, 525, 1125
DpnII GATC 3 cut(s) 3, 523, 1123
DriI GACNNNNNGTC 1 cut(s) 278
Eam1105I GACNNNNNGTC 1 cut(s) 278
Eco105I TACGTA 1 cut(s) 511
Eco130I CCWWGG 3 cut(s) 327, 466, 989
Eco147I AGGCCT 1 cut(s) 19
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 431, 826
Eco57I CTGAAG 2 cut(s) 215, 560
EcoNI CCTNNNNNAGG 2 cut(s) 614, 720
EcoRII CCWGG 5 cut(s) 274, 295, 475, 697, 721
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 3 cut(s) 327, 466, 989
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 3 cut(s) 327, 466, 989
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FaqI GGGAC 1 cut(s) 1241
FauNDI CATATG 1 cut(s) 1377
Fnu4HI GCNGC 4 cut(s) 472, 660, 1353, 1356
FokI GGATG 3 cut(s) 46, 493, 608
Fsp4HI GCNGC 4 cut(s) 472, 660, 1353, 1356
FspBI CTAG 3 cut(s) 270, 711, 1214
GluI GCNGC 4 cut(s) 472, 660, 1353, 1356
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 3 cut(s) 705, 720, 1350
HaeIII GGCC 3 cut(s) 19, 396, 988
HapII CCGG 2 cut(s) 1202, 1340
HindIII AAGCTT 3 cut(s) 591, 1070, 1148
HinfI GANTC 5 cut(s) 207, 599, 687, 857, 1198
HpaII CCGG 2 cut(s) 1202, 1340
HphI GGTGA 3 cut(s) 60, 515, 963
Hpy166II GTNNAC 2 cut(s) 206, 963
Hpy188I TCNGA 5 cut(s) 126, 830, 1063, 1110, 1177
Hpy188III TCNNGA 3 cut(s) 138, 932, 1052
Hpy8I GTNNAC 2 cut(s) 206, 963
HpyAV CCTTC 3 cut(s) 635, 825, 1284
HpyCH4III ACNGT 1 cut(s) 1268
HpyCH4IV ACGT 3 cut(s) 444, 510, 732
HpyCH4V TGCA 7 cut(s) 44, 182, 251, 500, 874, 1323, 1358
HpyF10VI GCNNNNNNNGC 2 cut(s) 656, 974
HpyF3I CTNAG 2 cut(s) 50, 853
HpySE526I ACGT 3 cut(s) 444, 510, 732
Kzo9I GATC 3 cut(s) 3, 523, 1123
LmnI GCTCC 3 cut(s) 606, 1054, 1064
Lsp1109I GCAGC 4 cut(s) 483, 671, 1339, 1342
LweI GCATC 5 cut(s) 169, 544, 630, 977, 1230
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 3 cut(s) 270, 711, 1214
MaeII ACGT 3 cut(s) 444, 510, 732
MaeIII GTNAC 3 cut(s) 563, 776, 1333
MalI GATC 3 cut(s) 5, 525, 1125
MboI GATC 3 cut(s) 3, 523, 1123
MboII GAAGA 8 cut(s) 104, 208, 368, 553, 556, 901, 1019, 1198
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 523
MluCI AATT 4 cut(s) 495, 664, 875, 1101
MlyI GAGTC 3 cut(s) 201, 608, 1192
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 3 cut(s) 351, 1236, 1396
MslI CAYNNNNRTG 2 cut(s) 533, 917
MspI CCGG 2 cut(s) 1202, 1340
MspR9I CCNGG 6 cut(s) 276, 297, 477, 699, 723, 1203
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 5 cut(s) 276, 297, 477, 699, 723
MwoI GCNNNNNNNGC 2 cut(s) 656, 974
NciI CCSGG 1 cut(s) 1203
NcoI CCATGG 1 cut(s) 466
NdeI CATATG 1 cut(s) 1377
NdeII GATC 3 cut(s) 3, 523, 1123
NlaIV GGNNCC 3 cut(s) 608, 1060, 1209
NmuCI GTSAC 1 cut(s) 776
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 3 cut(s) 493, 1321, 1362
PaeI GCATGC 1 cut(s) 493
PaqCI CACCTGC 1 cut(s) 491
PasI CCCWGGG 1 cut(s) 476
PceI AGGCCT 1 cut(s) 19
PciI ACATGT 1 cut(s) 1317
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 687, 857
PfoI TCCNGGA 2 cut(s) 697, 721
PkrI GCNGC 4 cut(s) 473, 661, 1354, 1357
PleI GAGTC 3 cut(s) 201, 607, 1192
PpsI GAGTC 3 cut(s) 201, 607, 1192
Ppu21I YACGTR 1 cut(s) 511
PscI ACATGT 1 cut(s) 1317
PshBI ATTAAT 1 cut(s) 351
Psp6I CCWGG 5 cut(s) 274, 295, 475, 697, 721
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 5 cut(s) 274, 295, 475, 697, 721
PspN4I GGNNCC 3 cut(s) 608, 1060, 1209
PspPI GGNCC 2 cut(s) 431, 826
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 3 cut(s) 925, 962, 1034
RsaNI GTAC 3 cut(s) 924, 961, 1033
RseI CAYNNNNRTG 2 cut(s) 533, 917
SaqAI TTAA 3 cut(s) 351, 1236, 1396
SatI GCNGC 4 cut(s) 472, 660, 1353, 1356
Sau3AI GATC 3 cut(s) 3, 523, 1123
Sau96I GGNCC 2 cut(s) 431, 826
SchI GAGTC 3 cut(s) 201, 608, 1192
ScrFI CCNGG 6 cut(s) 276, 297, 477, 699, 723, 1203
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 5 cut(s) 169, 544, 630, 977, 1230
SfcI CTRYAG 2 cut(s) 154, 654
SinI GGWCC 2 cut(s) 431, 826
SmiMI CAYNNNNRTG 2 cut(s) 533, 917
SmlI CTYRAG 3 cut(s) 767, 790, 982
SmoI CTYRAG 3 cut(s) 767, 790, 982
SnaBI TACGTA 1 cut(s) 511
SphI GCATGC 1 cut(s) 493
Sse9I AATT 4 cut(s) 495, 664, 875, 1101
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 1 cut(s) 429
SspMI CTAG 3 cut(s) 270, 711, 1214
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 6 cut(s) 274, 295, 475, 697, 721, 1201
StyI CCWWGG 3 cut(s) 327, 466, 989
TaaI ACNGT 1 cut(s) 1268
TaiI ACGT 3 cut(s) 447, 513, 735
TaqI TCGA 1 cut(s) 1041
TasI AATT 4 cut(s) 495, 664, 875, 1101
TatI WGTACW 1 cut(s) 960
TfiI GAWTC 2 cut(s) 687, 857
Tru1I TTAA 3 cut(s) 351, 1236, 1396
Tru9I TTAA 3 cut(s) 351, 1236, 1396
TscAI CASTG 2 cut(s) 406, 1271
TseFI GTSAC 1 cut(s) 776
TseI GCWGC 4 cut(s) 471, 659, 1352, 1355
Tsp45I GTSAC 1 cut(s) 776
TspDTI ATGAA 7 cut(s) 223, 439, 834, 895, 1113, 1199, 1394
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 2 cut(s) 406, 1271
VpaK11BI GGWCC 2 cut(s) 431, 826
VspI ATTAAT 1 cut(s) 351
XagI CCTNNNNNAGG 2 cut(s) 614, 720
XapI RAATTY 2 cut(s) 664, 1101
XceI RCATGY 3 cut(s) 493, 1321, 1362
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XspI CTAG 3 cut(s) 270, 711, 1214
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.