Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001085

Physical Location & Seq

Genomic Coordinates Reverse (-)

71035607 .. 71037848

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG490300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTATAGAGTTAATACGAAAAAAAAAAAGTGGAGGGTTAATGCACTAATTAACTTTTTCTTCTTACCCCCACTGATTTCTCGTGAGGTCCGAAGGAGAACAGCAAATGGCTACTTAGATTCAAGCCATGTCATGCAATTTGGGAATAAGAGACAAAGCGAGGATTTCATCTTCACTTACATGGGTACAAAGCCTGAAAATGATAACTATACTTACTTCAAGTACACGGCATCACCATTGACCTCAAGGCCAAGGGTTGTCAGCCAACGCATCGCAGACCTCCTCCATCTTCGGTACAAGTTCGACAATGCTCCTGATGGCTCCGATGTGAAGCTTGAAGCTCACAAACAGCTCATTGATGAAATTTCTCGGAGGAAAAAGTCGCGTAAAAAGGATTATACAGGAGAGGATGTTAATCCAGGAGAGTTTCATGCTATTAGTGTTGAAAATAAAACTGCTCTCATGGGAGGAACTAGCAAGGTTGTGGATATAAATGGTTCAAATGACCATTTTTTCATACACACCGACTATGGCTATCATAGGAAACTTGGTAAGCAATTTCAACTAATAAAAATTTCAAGTACTCTGATCTTACTATTGAACCCTGATGGTCTGATGGACATATCATACGAAATTAATGCACGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000325 GO:0000326 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006624 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0010467 GO:0012501 GO:0016485 GO:0016787 GO:0019538 GO:0022414 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0051604 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04612 map04142 map04612

Pfam Domains

Protein Families

Auxin_inducible Peptidase_C13

Protein Analysis

216

Amino Acids

25.12

Weight (kDa)

9.74

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20210
fragaria_vesca	FvH4_4g20610 FvH4_5g23280 FvH4_6g36630 FvH4_6g36640
malus_domestica	MD04G1024300.v1.1 MD04G1024500.v1.1 MD04G1024700.v1.1 MD04G1024900.v1.1 MD04G1025000.v1.1 MD04G1025200.v1.1 MD09G1167100.v1.1 MD14G1092500.v1.1 MD17G1264800.v1.1
prunus_persica	Prupe.3G024900_v2.0.a1 Prupe.3G025000_v2.0.a1 Prupe.3G242200_v2.0.a1 Prupe.7G024000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0149101 RchiOBHm_Chr7g0212221 RchiOBHm_Chr7g0221051
rosa_laevigata	RLG00000002181 RLG00000002913 RLG00000002914 RLG00000020368 RLG00000020369
rosa_multiflora	Rmu_sc0002283.1_g000057 Rmu_sc0002345.1_g000004 Rmu_sc0008839.1_g000015
rosa_roxburghii	Rroxscaffold_2G00098460 Rroxscaffold_2G00098470 Rroxscaffold_3G00238790 Rroxscaffold_3G00247020
rosa_rugosa	Rorug02G0409100 Rorug02G0409100 Rorug07G0132100 Rorug07G0132100 Rorug07G0200200
rosa_samantha	Rh2AG468800 Rh2AG468900 Rh2BG481400 Rh2CG454900 Rh2CG455000 Rh2DG490200 Rh2DG490300 Rh7AG265000 Rh7AG339500 Rh7BG259400 Rh7BG259500 Rh7BG330500 Rh7CG281700 Rh7CG357500 Rh7DG271600 Rh7DG338200
rosa_wichuraiana	Rw2G038170 Rw7G022620 Rw7G022640 Rw7G022680 Rw7G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	363, 573
AfaI	GTAC	4 cut(s)	187, 224, 296, 583
AgsI	TTSAA	8 cut(s)	123, 220, 338, 446, 501, 563, 579, 601
AjnI	CCWGG	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	646
AluBI	AGCT	3 cut(s)	334, 341, 352
AluI	AGCT	3 cut(s)	334, 341, 352
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	363, 573
AseI	ATTAAT	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	81
BccI	CCATC	4 cut(s)	294, 311, 602, 610
BceAI	ACGGC	1 cut(s)	243
BcgI	CGANNNNNNTGC	1 cut(s)	620
BciT130I	CCWGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	474
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	2 cut(s)	239, 279
BpuEI	CTTGAG	1 cut(s)	229
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	1 cut(s)	415
BseJI	GATNNNNATC	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	588
BspANI	GGCC	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	588
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	415
BstFNI	CGCG	1 cut(s)	385
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	588
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstUI	CGCG	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	643
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	4 cut(s)	186, 223, 295, 582
CviAII	CATG	5 cut(s)	128, 133, 181, 431, 463
CviQI	GTAC	4 cut(s)	186, 223, 295, 582
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	5 cut(s)	131, 136, 184, 434, 466
FatI	CATG	5 cut(s)	127, 132, 180, 430, 462
FokI	GGATG	1 cut(s)	422
FspBI	CTAG	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	5 cut(s)	131, 136, 184, 434, 466
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	5 cut(s)	92, 325, 372, 588, 615
Hpy188III	TCNNGA	2 cut(s)	83, 314
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	87
HpyCH4V	TGCA	3 cut(s)	44, 136, 641
HpyF3I	CTNAG	1 cut(s)	115
Hsp92II	CATG	5 cut(s)	131, 136, 184, 434, 466
Kzo9I	GATC	1 cut(s)	588
LmnI	GCTCC	2 cut(s)	316, 326
LpnPI	CCDG	6 cut(s)	207, 327, 387, 405, 432, 618
LweI	GCATC	2 cut(s)	239, 279
MaeI	CTAG	1 cut(s)	474
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MboII	GAAGA	3 cut(s)	52, 163, 281
MluCI	AATT	6 cut(s)	48, 137, 363, 557, 573, 633
MnlI	CCTC	9 cut(s)	27, 79, 154, 253, 290, 293, 366, 400, 461
MseI	TTAA	5 cut(s)	12, 39, 51, 414, 636
MslI	CAYNNNNRTG	2 cut(s)	179, 646
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	385
NdeII	GATC	1 cut(s)	588
NlaIII	CATG	5 cut(s)	131, 136, 184, 434, 466
NlaIV	GGNNCC	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	418
PshBI	ATTAAT	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	88
RsaI	GTAC	4 cut(s)	187, 224, 296, 583
RsaNI	GTAC	4 cut(s)	186, 223, 295, 582
RseI	CAYNNNNRTG	2 cut(s)	179, 646
SaqAI	TTAA	5 cut(s)	12, 39, 51, 414, 636
Sau3AI	GATC	1 cut(s)	588
Sau96I	GGNCC	1 cut(s)	88
ScaI	AGTACT	1 cut(s)	583
ScrFI	CCNGG	1 cut(s)	420
SetI	ASST	7 cut(s)	90, 245, 282, 336, 343, 354, 483
SfaNI	GCATC	2 cut(s)	239, 279
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	179, 646
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	6 cut(s)	48, 137, 363, 557, 573, 633
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	251
TaqI	TCGA	1 cut(s)	303
TasI	AATT	6 cut(s)	48, 137, 363, 557, 573, 633
TatI	WGTACW	2 cut(s)	222, 581
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	5 cut(s)	12, 39, 51, 414, 636
Tru9I	TTAA	5 cut(s)	12, 39, 51, 414, 636
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	4 cut(s)	157, 375, 419, 505
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	636
XapI	RAATTY	2 cut(s)	363, 573
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.