RLG00000002181

Peptidase C13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001085
Physical Location & Seq
Forward (+)
26860779 .. 26863532
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002181

Sequence Viewer

Length: 1104 bp
ATGATCCTAATCACAAGGCGTCGCTATGTTTTACTATTCCTTGCATTACTGAGTTTGACATCCATTTCACCATCATCATCATCAAAAGTGGAAGATATAAGCAACGGAACAAGATGGCCAGTTCTGATTGCTGGGTCAAGAGGATATGATAACTATAGGCATCAGGTGGACTCAAAGATGAGAATATCATTGTGTTCATGTATGACGATCGATATTGCATTCAACCCAAAAAATCCTAGACCTGGTGTCATTATCAACAAGCCAGATGGAAATGATGTTTATCAAGGAGTTCCCAAGGATATTAATACTCACAACTTCTATGCTGTTCTTCTTGGCAACATAAGTGCCCTCGCTGGTGGTAGCGGCAAGGTTCTAAATAGCGGTCCAAACGACCGCGTTTTCATTTATTACGCTGACCATGGCAGCCCTGGGATGGTTGGTAATTTTGGGTACGTAAAAAGTTTATTTTACATGGAAGCTTGCGAGTCTGGGAGCCTGTTTGAGGGCCTCCTTCCCAGCAATATAAGCATATACACAACTACAGCAGCAAATTCAAAAGAGAGCAGTTGGGGATTCTATTGTCCTGGAGACTTCCCTAGTCCTCCTCCAGGATATGACGTTTGCTTGGGAGACTTGTATAGTATTTCTTGGCTTGAGGATTGTGACAAGCATGACTTGAGCAAAGAAACTTTGGCGAAGCAATATGAAGTGGTCCGAAGGAGAACAGAAAATGGCTACTCAGATTCAAGCCATGTCATGCAATTTGGGAATAAGAGACAAAGCGAGGATTTCATCTTCACTTACATGGGTACAAATCCTGAAAATGATAACTATACTTTCTTCAAGTACACGGCATCACCAGCGACCTCAAGGCCAAGGGTTGTCAGCCAACGCAACGCAGACCTCCTCCATCTTCGGTACAAGTTCGACAATGCCCCTGATGGCTCCGATGTGAAAACTTATGAGAAACACTGTGGATTTTTATCAAGTTATGGAAGGAAACACACGAGAGCTATTGCCAACATTTGCAATACTGGAGTTACGCCGGAACAAATGGCTTCTGCATGTGTTCAAATCTGTCATATGAAATCTCCTCTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

368

Amino Acids

40.82

Weight (kDa)

7.96

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 38 - 147 1.1e-32 Peptidase C13 family
Peptidase_C13 PF01650 151 - 271 3.6e-35 Peptidase C13 family
Legum_prodom PF20985 318 - 360 1.2e-14 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 396
AciI CCGC 3 cut(s) 363, 381, 394
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 4 cut(s) 452, 811, 848, 920
AfiI CCNNNNNNNGG 4 cut(s) 242, 433, 502, 608
AgsI TTSAA 5 cut(s) 223, 555, 747, 844, 1073
AhdI GACNNNNNGTC 1 cut(s) 245
AjnI CCWGG 4 cut(s) 241, 427, 583, 607
AluBI AGCT 2 cut(s) 479, 1013
AluI AGCT 2 cut(s) 479, 1013
Alw26I GTCTC 3 cut(s) 582, 624, 769
AoxI GGCC 3 cut(s) 116, 505, 872
ApeKI GCWGC 2 cut(s) 423, 545
ApoI RAATTY 1 cut(s) 550
AseI ATTAAT 1 cut(s) 303
AspS9I GGNCC 3 cut(s) 383, 505, 712
AsuHPI GGTGA 2 cut(s) 60, 849
AvaII GGWCC 2 cut(s) 383, 712
BaeGI GKGCMC 1 cut(s) 349
BalI TGGCCA 1 cut(s) 118
BauI CACGAG 1 cut(s) 1006
BbvI GCAGC 2 cut(s) 435, 557
BccI CCATC 6 cut(s) 79, 108, 260, 427, 918, 935
BceAI ACGGC 1 cut(s) 867
BciT130I CCWGG 4 cut(s) 243, 429, 585, 609
BcoDI GTCTC 3 cut(s) 582, 624, 769
BfaI CTAG 2 cut(s) 237, 597
BfmI CTRYAG 2 cut(s) 154, 540
BisI GCNGC 3 cut(s) 364, 424, 546
BlsI GCNGC 3 cut(s) 365, 425, 547
Bme1390I CCNGG 4 cut(s) 243, 429, 585, 609
Bme18I GGWCC 2 cut(s) 383, 712
BmeRI GACNNNNNGTC 1 cut(s) 245
BmgT120I GGNCC 3 cut(s) 383, 505, 712
BmiI GGNNCC 2 cut(s) 494, 946
BmrFI CCNGG 4 cut(s) 243, 429, 585, 609
BmsI GCATC 2 cut(s) 169, 863
BpmI CTGGAG 3 cut(s) 591, 606, 1056
BpuEI CTTGAG 3 cut(s) 674, 697, 853
Bsa29I ATCGAT 1 cut(s) 210
BsaAI YACGTR 1 cut(s) 454
BsaBI GATNNNNATC 3 cut(s) 8, 279, 982
BsaHI GRCGYC 1 cut(s) 19
BsaJI CCNNGG 5 cut(s) 294, 418, 427, 428, 875
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 433, 502, 608
Bse1I ACTGG 2 cut(s) 119, 1039
Bse8I GATNNNNATC 3 cut(s) 8, 279, 982
BseBI CCWGG 4 cut(s) 243, 429, 585, 609
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 5 cut(s) 294, 418, 427, 428, 875
BseGI GGATG 2 cut(s) 59, 438
BseJI GATNNNNATC 3 cut(s) 8, 279, 982
BseLI CCNNNNNNNGG 4 cut(s) 242, 433, 502, 608
BseMII CTCAG 2 cut(s) 41, 753
BseNI ACTGG 2 cut(s) 119, 1039
BseRI GAGGAG 3 cut(s) 594, 896, 1083
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 2 cut(s) 435, 557
BseYI CCCAGC 2 cut(s) 131, 515
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 2 cut(s) 210, 394
BshFI GGCC 3 cut(s) 118, 507, 874
BshVI ATCGAT 1 cut(s) 210
BsiEI CGRYCG 2 cut(s) 210, 394
BsiSI CCGG 1 cut(s) 1046
BslI CCNNNNNNNGG 4 cut(s) 242, 433, 502, 608
BsmAI GTCTC 3 cut(s) 582, 624, 769
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 3 cut(s) 118, 507, 874
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 2 cut(s) 3, 207
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 3 cut(s) 363, 381, 394
BspANI GGCC 3 cut(s) 118, 507, 874
BspCNI CTCAG 2 cut(s) 42, 752
BspDI ATCGAT 1 cut(s) 210
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 494, 946
BsrI ACTGG 2 cut(s) 119, 1039
BssECI CCNNGG 5 cut(s) 294, 418, 427, 428, 875
BssMI GATC 2 cut(s) 3, 207
BssNI GRCGYC 1 cut(s) 19
BssSI CACGAG 1 cut(s) 1006
BssT1I CCWWGG 3 cut(s) 294, 418, 875
Bst2BI CACGAG 1 cut(s) 1006
Bst2UI CCWGG 4 cut(s) 243, 429, 585, 609
Bst4CI ACNGT 1 cut(s) 974
BstACI GRCGYC 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 454
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 50, 739
BstDSI CCRYGG 1 cut(s) 418
BstENI CCTNNNNNAGG 2 cut(s) 500, 606
BstF5I GGATG 2 cut(s) 59, 438
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 2 cut(s) 6, 210
BstMAI GTCTC 3 cut(s) 582, 624, 769
BstMBI GATC 2 cut(s) 3, 207
BstMCI CGRYCG 2 cut(s) 210, 394
BstMWI GCNNNNNNNGC 2 cut(s) 525, 860
BstNI CCWGG 4 cut(s) 243, 429, 585, 609
BstNSI RCATGY 1 cut(s) 1068
BstSCI CCNGG 4 cut(s) 241, 427, 583, 607
BstSFI CTRYAG 2 cut(s) 154, 540
BstSLI GKGCMC 1 cut(s) 349
BstSNI TACGTA 1 cut(s) 454
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 2 cut(s) 435, 557
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 3 cut(s) 118, 507, 874
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 2 cut(s) 59, 438
BtsIMutI CAGTG 1 cut(s) 970
Cac8I GCNNGC 1 cut(s) 481
Cfr13I GGNCC 3 cut(s) 383, 505, 712
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 8
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 4 cut(s) 451, 810, 847, 919
CviAII CATG 8 cut(s) 198, 419, 472, 671, 752, 757, 805, 1065
CviQI GTAC 4 cut(s) 451, 810, 847, 919
DdeI CTNAG 2 cut(s) 50, 739
DpnI GATC 2 cut(s) 5, 209
DpnII GATC 2 cut(s) 3, 207
DriI GACNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 116
Eam1105I GACNNNNNGTC 1 cut(s) 245
Eco105I TACGTA 1 cut(s) 454
Eco130I CCWWGG 3 cut(s) 294, 418, 875
Eco47I GGWCC 2 cut(s) 383, 712
EcoNI CCTNNNNNAGG 2 cut(s) 500, 606
EcoO109I RGGNCCY 1 cut(s) 505
EcoRII CCWGG 4 cut(s) 241, 427, 583, 607
EcoT14I CCWWGG 3 cut(s) 294, 418, 875
ErhI CCWWGG 3 cut(s) 294, 418, 875
FaeI CATG 8 cut(s) 201, 422, 475, 674, 755, 760, 808, 1068
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FatI CATG 8 cut(s) 197, 418, 471, 670, 751, 756, 804, 1064
FauNDI CATATG 1 cut(s) 1083
Fnu4HI GCNGC 3 cut(s) 364, 424, 546
FokI GGATG 2 cut(s) 46, 445
Fsp4HI GCNGC 3 cut(s) 364, 424, 546
FspBI CTAG 2 cut(s) 237, 597
GluI GCNGC 3 cut(s) 364, 424, 546
GsaI CCCAGC 2 cut(s) 135, 519
GsuI CTGGAG 3 cut(s) 591, 606, 1056
HaeIII GGCC 3 cut(s) 118, 507, 874
HapII CCGG 1 cut(s) 1046
HgaI GACGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 8 cut(s) 201, 422, 475, 674, 755, 760, 808, 1068
HindIII AAGCTT 1 cut(s) 477
HinfI GANTC 4 cut(s) 170, 485, 573, 743
HpaII CCGG 1 cut(s) 1046
HphI GGTGA 2 cut(s) 60, 849
Hpy166II GTNNAC 2 cut(s) 169, 849
Hpy188I TCNGA 4 cut(s) 126, 716, 742, 949
Hpy188III TCNNGA 2 cut(s) 138, 818
Hpy8I GTNNAC 2 cut(s) 169, 849
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 3 cut(s) 521, 711, 990
HpyCH4III ACNGT 1 cut(s) 974
HpyCH4IV ACGT 2 cut(s) 453, 618
HpyCH4V TGCA 5 cut(s) 44, 218, 760, 1029, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 525, 860
HpyF3I CTNAG 2 cut(s) 50, 739
HpySE526I ACGT 2 cut(s) 453, 618
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 8 cut(s) 201, 422, 475, 674, 755, 760, 808, 1068
Kzo9I GATC 2 cut(s) 3, 207
LmnI GCTCC 2 cut(s) 492, 950
Lsp1109I GCAGC 2 cut(s) 435, 557
LweI GCATC 2 cut(s) 169, 863
MabI ACCWGGT 1 cut(s) 241
MaeI CTAG 2 cut(s) 237, 597
MaeII ACGT 2 cut(s) 453, 618
MaeIII GTNAC 2 cut(s) 662, 1039
MalI GATC 2 cut(s) 5, 209
MboI GATC 2 cut(s) 3, 207
MboII GAAGA 5 cut(s) 104, 320, 787, 832, 905
MhlI GDGCHC 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 118
MluCI AATT 3 cut(s) 442, 550, 761
MluNI TGGCCA 1 cut(s) 118
MlyI GAGTC 2 cut(s) 164, 494
Mox20I TGGCCA 1 cut(s) 118
MscI TGGCCA 1 cut(s) 118
MseI TTAA 2 cut(s) 303, 1102
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 118
MspI CCGG 1 cut(s) 1046
MspR9I CCNGG 4 cut(s) 243, 429, 585, 609
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 4 cut(s) 243, 429, 585, 609
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 2 cut(s) 525, 860
NcoI CCATGG 1 cut(s) 418
NdeI CATATG 1 cut(s) 1083
NdeII GATC 2 cut(s) 3, 207
NlaIII CATG 8 cut(s) 201, 422, 475, 674, 755, 760, 808, 1068
NlaIV GGNNCC 2 cut(s) 494, 946
NmuCI GTSAC 1 cut(s) 662
NspI RCATGY 1 cut(s) 1068
PasI CCCWGGG 1 cut(s) 428
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 2 cut(s) 573, 743
PfoI TCCNGGA 2 cut(s) 583, 607
PkrI GCNGC 3 cut(s) 365, 425, 547
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 2 cut(s) 164, 493
PpsI GAGTC 2 cut(s) 164, 493
Ppu21I YACGTR 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 4 cut(s) 241, 427, 583, 607
PspFI CCCAGC 2 cut(s) 131, 515
PspGI CCWGG 4 cut(s) 241, 427, 583, 607
PspN4I GGNNCC 2 cut(s) 494, 946
PspPI GGNCC 3 cut(s) 383, 505, 712
PvuI CGATCG 1 cut(s) 210
RsaI GTAC 4 cut(s) 452, 811, 848, 920
RsaNI GTAC 4 cut(s) 451, 810, 847, 919
RseI CAYNNNNRTG 1 cut(s) 803
SaqAI TTAA 2 cut(s) 303, 1102
SatI GCNGC 3 cut(s) 364, 424, 546
Sau3AI GATC 2 cut(s) 3, 207
Sau96I GGNCC 3 cut(s) 383, 505, 712
SchI GAGTC 2 cut(s) 164, 494
ScrFI CCNGG 4 cut(s) 243, 429, 585, 609
SduI GDGCHC 1 cut(s) 349
SetI ASST 9 cut(s) 168, 244, 372, 456, 481, 621, 869, 906, 1015
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 2 cut(s) 169, 863
SfcI CTRYAG 2 cut(s) 154, 540
SinI GGWCC 2 cut(s) 383, 712
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 3 cut(s) 653, 676, 868
SmoI CTYRAG 3 cut(s) 653, 676, 868
SnaBI TACGTA 1 cut(s) 454
Sse9I AATT 3 cut(s) 442, 550, 761
SsiI CCGC 3 cut(s) 363, 381, 394
SspMI CTAG 2 cut(s) 237, 597
StyD4I CCNGG 4 cut(s) 241, 427, 583, 607
StyI CCWWGG 3 cut(s) 294, 418, 875
TaaI ACNGT 1 cut(s) 974
TaiI ACGT 2 cut(s) 456, 621
TaqI TCGA 2 cut(s) 210, 927
TasI AATT 3 cut(s) 442, 550, 761
TatI WGTACW 1 cut(s) 846
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 2 cut(s) 573, 743
Tru1I TTAA 2 cut(s) 303, 1102
Tru9I TTAA 2 cut(s) 303, 1102
TscAI CASTG 1 cut(s) 977
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 2 cut(s) 423, 545
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 5 cut(s) 186, 391, 720, 781, 1100
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 383, 712
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 2 cut(s) 500, 606
XapI RAATTY 1 cut(s) 550
XceI RCATGY 1 cut(s) 1068
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 2 cut(s) 237, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.