Rh7CG357500

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001085
Physical Location & Seq
Reverse (-)
44169707 .. 44172907
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG357500.1

Sequence Viewer

Length: 1119 bp
ATGTTCTTTTGTTATGTAGTTGAATTGGTCACTATGATCCTAATCACAAGGCCTCGCTATGTTTTACTATTCCTTGCATTACTGAGTTTGACATCCATTTCACCATCATCATCATCAAAAGTGGACGATATCAGCAACGGAACAAGATGGGCAGTTCTGATTGCTGGGTCAAGAGGATATGATAACTATAGGCATCAGGCTGATGTATGCCATGCATACCAGATACTGAAGAAAGGACTCAAAGATGAGAATATCATTGTGTTCATGTATGACGATATTGCATTCAACCCAAAAAATCCTAGACCTGGTGTCATTATCAACAAGCCAGATGGAAATGATGTTTATCAAGGAGTTCCCAAGGACTATACAGGAAAGGATATTAATACTCACAACTTCTATGCTGTTCTTCTTGGCAACATAAGTGGCCTCACTGGTGGTAGCGGCAAGGTTCTAAATAGCGGTCCAAACGACCACGTTTTCATTTATTACGCTGACCATGGCAGCCCTGGGATGGTTGGCATGCCAATTGCAGGTGATTACGTATATGCTAAAGATCTCATAGATGTGCTGAAGAAGAAGCACGATGCCAAAGGTTACAAAAGCATGGTGTTTTACATGGAAGCTTGCGAGTCTGGGAGCCTGTTTGAGGGCATCCTTCCCAACAATATAAGCATATACGCAACTACAGCAGCAAATTCAAAAGAGAGCAGTTGGGGATTCTATTGTCCTGGAGACTTCCCTAGTCCTCCTCCAGGATATGACGTTTGCTTGGGAGACTTGTATAGTATTTCTTGGCTTGAGGATTGTGACAAGCATGACTTGAGGAAAGAAACTTTGGCGAAGCAATATGAAGTGGTCCGAAGGAGAACAGCAAATGGCTACTTAGATTCAAGCCATGTCATGCAATTTGGGAATAAGAGACAAAGCGAGGATTTCATCTTCACTTACATGGGTACAAATCCTGAAAATGATAACTATACTTACTTCAAGTACACGGCATCACCAGCGACCTCAAGGCCAAGGGTTGTCAGCCAACGCAACGCAGACCTCCTCCATCTTCGGTACAAGGTTGGTTATAAGCTGCATTCAAGCTATCAATTTGAATATTTGATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

372

Amino Acids

41.92

Weight (kDa)

6.79

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 49 - 319 1.9e-112 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1077
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 521
AciI CCGC 2 cut(s) 441, 459
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 248, 590
AfaI GTAC 3 cut(s) 955, 992, 1064
AfiI CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
AgsI TTSAA 7 cut(s) 23, 286, 699, 891, 988, 1089, 1103
AhdI GACNNNNNGTC 1 cut(s) 308
AjnI CCWGG 4 cut(s) 304, 505, 727, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 3 cut(s) 623, 1081, 1092
AluI AGCT 3 cut(s) 623, 1081, 1092
Alw26I GTCTC 3 cut(s) 726, 768, 913
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 3 cut(s) 50, 424, 1016
ApeKI GCWGC 3 cut(s) 501, 689, 1081
ApoI RAATTY 1 cut(s) 694
AseI ATTAAT 2 cut(s) 381, 1113
AspS9I GGNCC 2 cut(s) 461, 856
AsuHPI GGTGA 3 cut(s) 93, 545, 993
AvaII GGWCC 2 cut(s) 461, 856
BbvI GCAGC 3 cut(s) 513, 701, 1068
BccI CCATC 5 cut(s) 112, 141, 323, 505, 1062
BceAI ACGGC 1 cut(s) 1011
BciT130I CCWGG 4 cut(s) 306, 507, 729, 753
BcoDI GTCTC 3 cut(s) 726, 768, 913
BfaI CTAG 2 cut(s) 300, 741
BfmI CTRYAG 2 cut(s) 187, 684
BfuAI ACCTGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 553
BisI GCNGC 4 cut(s) 442, 502, 690, 1082
BlsI GCNGC 4 cut(s) 443, 503, 691, 1083
Bme1390I CCNGG 4 cut(s) 306, 507, 729, 753
Bme18I GGWCC 2 cut(s) 461, 856
BmeRI GACNNNNNGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 461, 856
BmiI GGNNCC 1 cut(s) 638
BmrFI CCNGG 4 cut(s) 306, 507, 729, 753
BmsI GCATC 4 cut(s) 202, 574, 660, 1007
BpmI CTGGAG 2 cut(s) 735, 750
BpuEI CTTGAG 3 cut(s) 818, 841, 997
BsaAI YACGTR 1 cut(s) 541
BsaBI GATNNNNATC 2 cut(s) 41, 342
BsaJI CCNNGG 5 cut(s) 357, 496, 505, 506, 1019
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
Bse1I ACTGG 1 cut(s) 436
Bse8I GATNNNNATC 2 cut(s) 41, 342
BseBI CCWGG 4 cut(s) 306, 507, 729, 753
BseDI CCNNGG 5 cut(s) 357, 496, 505, 506, 1019
BseGI GGATG 3 cut(s) 92, 516, 651
BseJI GATNNNNATC 2 cut(s) 41, 342
BseLI CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 2 cut(s) 738, 1040
BseXI GCAGC 3 cut(s) 513, 701, 1068
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 3 cut(s) 52, 426, 1018
BslI CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
BsmAI GTCTC 3 cut(s) 726, 768, 913
BsmI GAATGC 2 cut(s) 281, 1084
BsnI GGCC 3 cut(s) 52, 426, 1018
Bsp143I GATC 2 cut(s) 36, 553
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 2 cut(s) 441, 459
BspANI GGCC 3 cut(s) 52, 426, 1018
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 638
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 5 cut(s) 357, 496, 505, 506, 1019
BssMI GATC 2 cut(s) 36, 553
BssT1I CCWWGG 3 cut(s) 357, 496, 1019
Bst2UI CCWGG 4 cut(s) 306, 507, 729, 753
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 521, 625
BstDEI CTNAG 2 cut(s) 83, 883
BstDSI CCRYGG 1 cut(s) 496
BstENI CCTNNNNNAGG 2 cut(s) 644, 750
BstF5I GGATG 3 cut(s) 92, 516, 651
BstKTI GATC 2 cut(s) 39, 556
BstMAI GTCTC 3 cut(s) 726, 768, 913
BstMBI GATC 2 cut(s) 36, 553
BstMWI GCNNNNNNNGC 2 cut(s) 686, 1004
BstNI CCWGG 4 cut(s) 306, 507, 729, 753
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 4 cut(s) 304, 505, 727, 751
BstSFI CTRYAG 2 cut(s) 187, 684
BstSNI TACGTA 1 cut(s) 541
BstV1I GCAGC 3 cut(s) 513, 701, 1068
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 3 cut(s) 52, 426, 1018
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 3 cut(s) 92, 516, 651
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 521, 625
CaiI CAGNNNCTG 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 461, 856
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 3 cut(s) 954, 991, 1063
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviQI GTAC 3 cut(s) 954, 991, 1063
DdeI CTNAG 2 cut(s) 83, 883
DpnI GATC 2 cut(s) 38, 555
DpnII GATC 2 cut(s) 36, 553
DriI GACNNNNNGTC 1 cut(s) 308
Eam1105I GACNNNNNGTC 1 cut(s) 308
Eco105I TACGTA 1 cut(s) 541
Eco130I CCWWGG 3 cut(s) 357, 496, 1019
Eco147I AGGCCT 1 cut(s) 52
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 2 cut(s) 461, 856
Eco57I CTGAAG 2 cut(s) 248, 590
EcoNI CCTNNNNNAGG 2 cut(s) 644, 750
EcoRII CCWGG 4 cut(s) 304, 505, 727, 751
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 3 cut(s) 357, 496, 1019
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 3 cut(s) 357, 496, 1019
FalI AAGNNNNNCTT 2 cut(s) 803, 835
Fnu4HI GCNGC 4 cut(s) 442, 502, 690, 1082
FokI GGATG 3 cut(s) 79, 523, 638
Fsp4HI GCNGC 4 cut(s) 442, 502, 690, 1082
FspBI CTAG 2 cut(s) 300, 741
GluI GCNGC 4 cut(s) 442, 502, 690, 1082
GsaI CCCAGC 1 cut(s) 168
GsuI CTGGAG 2 cut(s) 735, 750
HaeIII GGCC 3 cut(s) 52, 426, 1018
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 4 cut(s) 237, 629, 717, 887
HphI GGTGA 3 cut(s) 93, 545, 993
Hpy166II GTNNAC 2 cut(s) 124, 993
Hpy188I TCNGA 2 cut(s) 159, 860
Hpy188III TCNNGA 2 cut(s) 171, 962
Hpy8I GTNNAC 2 cut(s) 124, 993
HpyAV CCTTC 2 cut(s) 665, 855
HpyCH4IV ACGT 3 cut(s) 474, 540, 762
HpyCH4V TGCA 6 cut(s) 77, 215, 281, 530, 904, 1084
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 1004
HpyF3I CTNAG 2 cut(s) 83, 883
HpySE526I ACGT 3 cut(s) 474, 540, 762
Kzo9I GATC 2 cut(s) 36, 553
LmnI GCTCC 1 cut(s) 636
Lsp1109I GCAGC 3 cut(s) 513, 701, 1068
LweI GCATC 4 cut(s) 202, 574, 660, 1007
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 2 cut(s) 300, 741
MaeII ACGT 3 cut(s) 474, 540, 762
MaeIII GTNAC 3 cut(s) 28, 593, 806
MalI GATC 2 cut(s) 38, 555
MboI GATC 2 cut(s) 36, 553
MboII GAAGA 6 cut(s) 241, 398, 583, 586, 931, 1049
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 553
MluCI AATT 6 cut(s) 23, 525, 694, 905, 1097, 1114
MlyI GAGTC 2 cut(s) 231, 638
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 3 cut(s) 381, 1113, 1117
MslI CAYNNNNRTG 2 cut(s) 563, 947
MspR9I CCNGG 4 cut(s) 306, 507, 729, 753
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 2 cut(s) 281, 1084
MvaI CCWGG 4 cut(s) 306, 507, 729, 753
MwoI GCNNNNNNNGC 2 cut(s) 686, 1004
NcoI CCATGG 1 cut(s) 496
NdeII GATC 2 cut(s) 36, 553
NlaIV GGNNCC 1 cut(s) 638
NmuCI GTSAC 2 cut(s) 28, 806
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 1 cut(s) 523
PacI TTAATTAA 1 cut(s) 1117
PaeI GCATGC 1 cut(s) 523
PaqCI CACCTGC 1 cut(s) 521
PasI CCCWGGG 1 cut(s) 506
PceI AGGCCT 1 cut(s) 52
PctI GAATGC 2 cut(s) 281, 1084
PfeI GAWTC 2 cut(s) 717, 887
PfoI TCCNGGA 2 cut(s) 727, 751
PkrI GCNGC 4 cut(s) 443, 503, 691, 1083
PleI GAGTC 2 cut(s) 231, 637
PpsI GAGTC 2 cut(s) 231, 637
Ppu21I YACGTR 1 cut(s) 541
PshBI ATTAAT 2 cut(s) 381, 1113
PsiI TTATAA 1 cut(s) 1077
Psp6I CCWGG 4 cut(s) 304, 505, 727, 751
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 4 cut(s) 304, 505, 727, 751
PspN4I GGNNCC 1 cut(s) 638
PspPI GGNCC 2 cut(s) 461, 856
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 3 cut(s) 955, 992, 1064
RsaNI GTAC 3 cut(s) 954, 991, 1063
RseI CAYNNNNRTG 2 cut(s) 563, 947
SaqAI TTAA 3 cut(s) 381, 1113, 1117
SatI GCNGC 4 cut(s) 442, 502, 690, 1082
Sau3AI GATC 2 cut(s) 36, 553
Sau96I GGNCC 2 cut(s) 461, 856
SchI GAGTC 2 cut(s) 231, 638
ScrFI CCNGG 4 cut(s) 306, 507, 729, 753
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 4 cut(s) 202, 574, 660, 1007
SfcI CTRYAG 2 cut(s) 187, 684
SinI GGWCC 2 cut(s) 461, 856
SmiMI CAYNNNNRTG 2 cut(s) 563, 947
SmlI CTYRAG 3 cut(s) 797, 820, 1012
SmoI CTYRAG 3 cut(s) 797, 820, 1012
SnaBI TACGTA 1 cut(s) 541
SphI GCATGC 1 cut(s) 523
Sse9I AATT 6 cut(s) 23, 525, 694, 905, 1097, 1114
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 2 cut(s) 441, 459
SspI AATATT 1 cut(s) 1106
SspMI CTAG 2 cut(s) 300, 741
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 4 cut(s) 304, 505, 727, 751
StyI CCWWGG 3 cut(s) 357, 496, 1019
TaiI ACGT 3 cut(s) 477, 543, 765
TasI AATT 6 cut(s) 23, 525, 694, 905, 1097, 1114
TatI WGTACW 1 cut(s) 990
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 2 cut(s) 717, 887
Tru1I TTAA 3 cut(s) 381, 1113, 1117
Tru9I TTAA 3 cut(s) 381, 1113, 1117
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 2 cut(s) 28, 806
TseI GCWGC 3 cut(s) 501, 689, 1081
Tsp45I GTSAC 2 cut(s) 28, 806
TspDTI ATGAA 4 cut(s) 253, 469, 864, 925
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 2 cut(s) 461, 856
VspI ATTAAT 2 cut(s) 381, 1113
XagI CCTNNNNNAGG 2 cut(s) 644, 750
XapI RAATTY 1 cut(s) 694
XceI RCATGY 1 cut(s) 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XspI CTAG 2 cut(s) 300, 741
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.