RLG00000020369

Peptidase C13 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
64290134 .. 64292501
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020369

Sequence Viewer

Length: 348 bp
ATGTCATGCAATTTGGGAATAAGAGACAACGAGGATTTCATCTTCACTTACATGGGTAAAAATCCTGAAAATGATAACTATACTTACTTCAAGTACACGGCATCACCATCGAGCTTAAGGCCAAGGGTTGTCAGCCAACGCAACGCAGACCTCCTCCATCTTCGGTACAAGTTCGACAATGCCCCTGATGGCTCCGATTCGCGTAAAAAGGATTATACAGGAGAGGATGTTAATCCAGGAGAGTTTCATGCTATTAGCGTTGAAAATAAAACTGCTCTCATAGGAGGAACTAGCAAGGCCTCATCATCTCGTGAAGACAATCGAGCATGGAAAAAGCAAGCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.07

Weight (kDa)

8.69

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 202
AfaI GTAC 2 cut(s) 95, 167
AflII CTTAAG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 91, 263
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 114, 341
AluI AGCT 2 cut(s) 114, 341
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 2 cut(s) 119, 297
AsuHPI GGTGA 1 cut(s) 96
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 321
BccI CCATC 3 cut(s) 115, 165, 182
BceAI ACGGC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 1 cut(s) 237
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 2 cut(s) 291, 342
BfrI CTTAAG 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 110
BpiI GAAGAC 1 cut(s) 321
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 122
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bse8I GATNNNNATC 1 cut(s) 231
BseBI CCWGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 122
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 121, 299
BsmAI GTCTC 1 cut(s) 18
BsnI GGCC 2 cut(s) 121, 299
BspANI GGCC 2 cut(s) 121, 299
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 122
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 122
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 339
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 235
BstUI CGCG 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 121, 299
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 339
Csp6I GTAC 2 cut(s) 94, 166
CviAII CATG 4 cut(s) 6, 52, 248, 327
CviJI RGCY 6 cut(s) 114, 121, 135, 192, 299, 341
CviKI_1 RGCY 6 cut(s) 114, 121, 135, 192, 299, 341
CviQI GTAC 2 cut(s) 94, 166
Eco130I CCWWGG 1 cut(s) 122
Eco147I AGGCCT 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 4 cut(s) 9, 55, 251, 330
FaiI YATR 7 cut(s) 7, 53, 81, 216, 249, 281, 328
FatI CATG 4 cut(s) 5, 51, 247, 326
FokI GGATG 1 cut(s) 239
FspBI CTAG 2 cut(s) 291, 342
HaeIII GGCC 2 cut(s) 121, 299
Hin1II CATG 4 cut(s) 9, 55, 251, 330
HinfI GANTC 1 cut(s) 197
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 65, 311
Hpy8I GTNNAC 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 9
Hsp92II CATG 4 cut(s) 9, 55, 251, 330
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 78, 198, 204, 222, 249
LweI GCATC 1 cut(s) 110
MaeI CTAG 2 cut(s) 291, 342
MboII GAAGA 3 cut(s) 34, 152, 326
MluCI AATT 1 cut(s) 10
MnlI CCTC 6 cut(s) 25, 161, 164, 217, 278, 310
MseI TTAA 2 cut(s) 116, 231
MslI CAYNNNNRTG 1 cut(s) 50
MspCI CTTAAG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 237
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 202
NlaIII CATG 4 cut(s) 9, 55, 251, 330
NlaIV GGNNCC 1 cut(s) 193
PceI AGGCCT 1 cut(s) 299
PfeI GAWTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 193
RsaI GTAC 2 cut(s) 95, 167
RsaNI GTAC 2 cut(s) 94, 166
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 2 cut(s) 116, 231
ScrFI CCNGG 1 cut(s) 237
SetI ASST 4 cut(s) 116, 153, 343, 347
SfaNI GCATC 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 10
SseBI AGGCCT 1 cut(s) 299
SspMI CTAG 2 cut(s) 291, 342
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 235
StyI CCWWGG 1 cut(s) 122
TaqI TCGA 3 cut(s) 110, 174, 322
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 2 cut(s) 116, 231
Tru9I TTAA 2 cut(s) 116, 231
TspDTI ATGAA 2 cut(s) 28, 236
Vha464I CTTAAG 1 cut(s) 115
XspI CTAG 2 cut(s) 291, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.