Rorug07G0200200

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001085
Physical Location & Seq
Reverse (-)
17374650 .. 17374934
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0200200.1

Sequence Viewer

Length: 285 bp
ATGCTAGTTCCACATGAATCTATCAATGACACTATGGTTGATGGATTCGACATAGCCAAGAAATCAAGAATTCTAGTAAATATTTGGAGCATTGGAGATCCTCAAATTTGGTCACAAAATGTGGAGTTCTATCCTGAAAGATTCCTGAATAGCAATGAACACCTCCAGGGACATGACGTCCAGTTCATACCATTTGGATCTGGTAGAAAAGCGTGTCCGGGTCGATCTGGAATTAGGCCTAACCACAGTTCGGCTAGTTGTGGCGCATTTGGTGCACTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

94

Amino Acids

10.41

Weight (kDa)

6.38

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 75 2e-20 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AclWI GGATC 2 cut(s) 92, 205
AcsI RAATTY 2 cut(s) 69, 105
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 250
AhdI GACNNNNNGTC 1 cut(s) 176
AjnI CCWGG 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 277
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 2 cut(s) 92, 205
AoxI GGCC 1 cut(s) 236
ApaLI GTGCAC 1 cut(s) 273
ApoI RAATTY 2 cut(s) 69, 105
AspLEI GCGC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 277
BccI CCATC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 219
BfaI CTAG 3 cut(s) 5, 74, 255
Bme1390I CCNGG 2 cut(s) 167, 219
BmeRI GACNNNNNGTC 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 167, 219
BpmI CTGGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 277
BshFI GGCC 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 3 cut(s) 97, 197, 224
BspANI GGCC 1 cut(s) 238
BspPI GGATC 2 cut(s) 92, 205
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 3 cut(s) 97, 197, 224
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 272
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 3 cut(s) 100, 200, 227
BstMBI GATC 3 cut(s) 97, 197, 224
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 165, 217
BstSLI GKGCMC 1 cut(s) 277
BstX2I RGATCY 2 cut(s) 97, 197
BstYI RGATCY 2 cut(s) 97, 197
BsuRI GGCC 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 275
CfoI GCGC 1 cut(s) 266
CviAII CATG 2 cut(s) 14, 173
CviJI RGCY 3 cut(s) 56, 238, 254
CviKI_1 RGCY 3 cut(s) 56, 238, 254
DpnI GATC 3 cut(s) 99, 199, 226
DpnII GATC 3 cut(s) 97, 197, 224
DriI GACNNNNNGTC 1 cut(s) 176
Eam1105I GACNNNNNGTC 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 17, 176
FaiI YATR 5 cut(s) 15, 35, 53, 174, 188
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 13, 172
FspBI CTAG 3 cut(s) 5, 74, 255
GlaI GCGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 238
HapII CCGG 1 cut(s) 218
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 2 cut(s) 17, 176
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 3 cut(s) 17, 45, 141
HpaII CCGG 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 275
Hpy188III TCNNGA 4 cut(s) 66, 134, 145, 228
Hpy8I GTNNAC 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 2 cut(s) 17, 176
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 97, 197, 224
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 8 cut(s) 147, 152, 158, 179, 186, 194, 213, 231
MaeI CTAG 3 cut(s) 5, 74, 255
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 111
MalI GATC 3 cut(s) 99, 199, 226
MboI GATC 3 cut(s) 97, 197, 224
MflI RGATCY 2 cut(s) 97, 197
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 3 cut(s) 69, 105, 231
MnlI CCTC 2 cut(s) 111, 173
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 167, 219
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 219
NdeII GATC 3 cut(s) 97, 197, 224
NlaIII CATG 2 cut(s) 17, 176
NmuCI GTSAC 1 cut(s) 111
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 3 cut(s) 17, 45, 141
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PsuI RGATCY 2 cut(s) 97, 197
Sau3AI GATC 3 cut(s) 97, 197, 224
ScrFI CCNGG 2 cut(s) 167, 219
SduI GDGCHC 1 cut(s) 277
SetI ASST 2 cut(s) 165, 180
Sse9I AATT 3 cut(s) 69, 105, 231
SseBI AGGCCT 1 cut(s) 238
SspI AATATT 1 cut(s) 82
SspMI CTAG 3 cut(s) 5, 74, 255
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 165, 217
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 48, 223
TasI AATT 3 cut(s) 69, 105, 231
TfiI GAWTC 3 cut(s) 17, 45, 141
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 30, 171, 175
TspRI CASTG 1 cut(s) 282
VneI GTGCAC 1 cut(s) 273
XapI RAATTY 2 cut(s) 69, 105
XspI CTAG 3 cut(s) 5, 74, 255
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.