Rroxscaffold_2G00098460

Vacuolar-processing enzyme-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
19644594 .. 19644998
405 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00098460.1

Sequence Viewer

Length: 297 bp
ATGGGTACAAATTCTGAAAATGATAACTATACTTACTTCAAGTACACGGCATCAACATCGACCTCAAGGCCAAGGGTTGTCAGCCAACGCAACGCAGACCTCCTCCATCTTCGGTACAAATTCGACAATGCCCCTGATGGCTCTGATGTGAAGCTTGAAACTCACAAACAGCTCATTGATGAAATTTCTCGGAGGAAAAAAGTGGATTATAACGTAAAGCAGATAGGGAAGCTTTTGTTTGGGTATGACAAGAGTTCAGAAGTGATGAAGAATGTCAGGACTCCGGGGAACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.3

Weight (kDa)

9.52

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Legum_prodom PF20985 56 - 97 1.6e-07 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AcsI RAATTY 3 cut(s) 10, 119, 183
AfaI GTAC 3 cut(s) 7, 44, 116
AgsI TTSAA 2 cut(s) 40, 158
AluBI AGCT 3 cut(s) 154, 172, 232
AluI AGCT 3 cut(s) 154, 172, 232
AoxI GGCC 1 cut(s) 68
ApoI RAATTY 3 cut(s) 10, 119, 183
AsuC2I CCSGG 1 cut(s) 285
BccI CCATC 2 cut(s) 114, 131
BceAI ACGGC 1 cut(s) 63
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 71, 284
BseDI CCNNGG 2 cut(s) 71, 284
BseRI GAGGAG 1 cut(s) 92
BshFI GGCC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 284
BsnI GGCC 1 cut(s) 70
BspANI GGCC 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 290
BssECI CCNNGG 2 cut(s) 71, 284
BssT1I CCWWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 283
BsuRI GGCC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 6, 43, 115
CviJI RGCY 6 cut(s) 70, 84, 141, 154, 172, 232
CviKI_1 RGCY 6 cut(s) 70, 84, 141, 154, 172, 232
CviQI GTAC 3 cut(s) 6, 43, 115
Eco130I CCWWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 71
FaiI YATR 3 cut(s) 30, 210, 246
FspBI CTAG 1 cut(s) 295
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 284
HindIII AAGCTT 2 cut(s) 152, 230
HinfI GANTC 1 cut(s) 280
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 4 cut(s) 16, 145, 192, 259
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 213
LpnPI CCDG 2 cut(s) 147, 262
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 295
MaeII ACGT 1 cut(s) 213
MboII GAAGA 2 cut(s) 101, 280
MluCI AATT 3 cut(s) 10, 119, 183
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 4 cut(s) 73, 110, 113, 186
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 285
NciI CCSGG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 290
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PsiI TTATAA 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 290
RsaI GTAC 3 cut(s) 7, 44, 116
RsaNI GTAC 3 cut(s) 6, 43, 115
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 285
SetI ASST 7 cut(s) 65, 102, 156, 174, 216, 234, 294
SfaNI GCATC 1 cut(s) 59
SgeI CNNG 9 cut(s) 52, 58, 78, 84, 146, 167, 201, 262, 289
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 3 cut(s) 10, 119, 183
SspMI CTAG 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 71
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 59, 123
TasI AATT 3 cut(s) 10, 119, 183
TatI WGTACW 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 195, 281
XapI RAATTY 3 cut(s) 10, 119, 183
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.