Rh7DG338200

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001085
Physical Location & Seq
Reverse (-)
44491486 .. 44492951
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG338200.1

Sequence Viewer

Length: 834 bp
ATGATCCTAATCACAAGGCCTCGCTATGTTTTACTATTCCTTGCATTACTGAGTTTGACATCCATTTCACCATCATCATCATCAAAAGTGGAAGATATCAGCAACGGAACAAGATGGGCAGTTCTGATTGCTGGGTTAAGAGGATATGATAACTATAGGCATCAGGCTGATGTATGCCATGCATACCAGATACTGAAGAAAGGTGGACTCAAAGATGAGAATATCATTGTGTTCATGTATGACGATATTGCATTCAACCCAAAAAATCCTAGACCTGGTGTCATTATCAACAAGCCAGATGGAAATGATGTTTATCAAGGAGTTCCCAAGGACTATACAGGAAAGGATATTAATACTCACAACGTCTATGCTGTTCTTCTTGGTAACATAAGTGGCCTCACTGGTGGTAGCGGCAAGGTTCTAAATAGCGGTCCAAACGACCGCGTTTTCATTTATTACGCTGACCATGGCAGCCCTGGGATGGTTCGCATGCCAATTGCAGGTGATTACGTATATGCTAAAGATCTCATAGATGTGCTGAAGAAGAAGCACGATGCAAAAGGTTACAAAAGCATGGTGTTTTACATGGAAGCTTGCGAGTCTGGGAGCCTGTTTGAGGGCATCCTTCCCAACAATATAAGCATATACGCAACTACAGCAGCAAATTCAAAAGAGAGCAGTTGGGGATTCTATTGTCCTGGAGACTTCCCCAGTCCTCCTCCAGGATATGACGTTTGCTTGGGAGACTTGTATAGTATTTCTTGGCTTGAGGATTGGTATATATGCAACAGTTCTTGTTGTCACATACATTCATCATTAATATTTATCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

277

Amino Acids

30.64

Weight (kDa)

6.15

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 38 - 261 2e-98 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 491
Acc36I ACCTGC 1 cut(s) 491
AccII CGCG 1 cut(s) 444
AciI CCGC 3 cut(s) 411, 429, 442
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 2 cut(s) 215, 560
AfiI CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
AgsI TTSAA 2 cut(s) 256, 669
AhdI GACNNNNNGTC 1 cut(s) 278
AjnI CCWGG 4 cut(s) 274, 475, 697, 721
AluBI AGCT 1 cut(s) 593
AluI AGCT 1 cut(s) 593
Alw26I GTCTC 2 cut(s) 696, 738
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 2 cut(s) 17, 394
ApeKI GCWGC 2 cut(s) 471, 659
ApoI RAATTY 1 cut(s) 664
AseI ATTAAT 2 cut(s) 351, 818
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 2 cut(s) 60, 515
AvaII GGWCC 1 cut(s) 431
BbvI GCAGC 2 cut(s) 483, 671
BccI CCATC 4 cut(s) 79, 108, 293, 475
BciT130I CCWGG 4 cut(s) 276, 477, 699, 723
BcoDI GTCTC 2 cut(s) 696, 738
BfaI CTAG 2 cut(s) 270, 832
BfmI CTRYAG 2 cut(s) 154, 654
BfuAI ACCTGC 1 cut(s) 491
BglII AGATCT 1 cut(s) 523
BisI GCNGC 3 cut(s) 412, 472, 660
BlsI GCNGC 3 cut(s) 413, 473, 661
Bme1390I CCNGG 4 cut(s) 276, 477, 699, 723
Bme18I GGWCC 1 cut(s) 431
BmeRI GACNNNNNGTC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 608
BmrFI CCNGG 4 cut(s) 276, 477, 699, 723
BmrI ACTGGG 1 cut(s) 705
BmsI GCATC 3 cut(s) 169, 544, 630
BmuI ACTGGG 1 cut(s) 705
BpmI CTGGAG 2 cut(s) 705, 720
BpuEI CTTGAG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 511
BsaBI GATNNNNATC 2 cut(s) 8, 312
BsaJI CCNNGG 4 cut(s) 327, 466, 475, 476
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
Bse1I ACTGG 2 cut(s) 406, 711
Bse8I GATNNNNATC 2 cut(s) 8, 312
BseBI CCWGG 4 cut(s) 276, 477, 699, 723
BseDI CCNNGG 4 cut(s) 327, 466, 475, 476
BseGI GGATG 3 cut(s) 59, 486, 621
BseJI GATNNNNATC 2 cut(s) 8, 312
BseLI CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 406, 711
BseRI GAGGAG 1 cut(s) 708
BseXI GCAGC 2 cut(s) 483, 671
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 2 cut(s) 19, 396
BsiEI CGRYCG 1 cut(s) 442
BslI CCNNNNNNNGG 5 cut(s) 275, 481, 500, 616, 722
BsmAI GTCTC 2 cut(s) 696, 738
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 19, 396
Bsp143I GATC 2 cut(s) 3, 523
Bsp19I CCATGG 1 cut(s) 466
BspACI CCGC 3 cut(s) 411, 429, 442
BspANI GGCC 2 cut(s) 19, 396
BspCNI CTCAG 1 cut(s) 42
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 608
BspMI ACCTGC 1 cut(s) 491
BsrI ACTGG 2 cut(s) 406, 711
BssECI CCNNGG 4 cut(s) 327, 466, 475, 476
BssMI GATC 2 cut(s) 3, 523
BssT1I CCWWGG 2 cut(s) 327, 466
Bst2UI CCWGG 4 cut(s) 276, 477, 699, 723
Bst4CI ACNGT 1 cut(s) 791
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 2 cut(s) 491, 595
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 466
BstENI CCTNNNNNAGG 2 cut(s) 614, 720
BstF5I GGATG 3 cut(s) 59, 486, 621
BstFNI CGCG 1 cut(s) 444
BstKTI GATC 2 cut(s) 6, 526
BstMAI GTCTC 2 cut(s) 696, 738
BstMBI GATC 2 cut(s) 3, 523
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 4 cut(s) 276, 477, 699, 723
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 4 cut(s) 274, 475, 697, 721
BstSFI CTRYAG 2 cut(s) 154, 654
BstSNI TACGTA 1 cut(s) 511
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 483, 671
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 2 cut(s) 19, 396
BtgI CCRYGG 1 cut(s) 466
BtsCI GGATG 3 cut(s) 59, 486, 621
BtsIMutI CAGTG 1 cut(s) 399
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 2 cut(s) 491, 595
CaiI CAGNNNCTG 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 431
CsiI ACCWGGT 1 cut(s) 274
CviAII CATG 6 cut(s) 179, 235, 467, 490, 574, 586
CviJI RGCY 8 cut(s) 19, 167, 295, 396, 474, 593, 609, 766
CviKI_1 RGCY 8 cut(s) 19, 167, 295, 396, 474, 593, 609, 766
DdeI CTNAG 1 cut(s) 50
DpnI GATC 2 cut(s) 5, 525
DpnII GATC 2 cut(s) 3, 523
DriI GACNNNNNGTC 1 cut(s) 278
Eam1105I GACNNNNNGTC 1 cut(s) 278
Eco105I TACGTA 1 cut(s) 511
Eco130I CCWWGG 2 cut(s) 327, 466
Eco147I AGGCCT 1 cut(s) 19
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 431
Eco57I CTGAAG 2 cut(s) 215, 560
EcoNI CCTNNNNNAGG 2 cut(s) 614, 720
EcoRII CCWGG 4 cut(s) 274, 475, 697, 721
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 327, 466
EcoT22I ATGCAT 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 327, 466
FaeI CATG 6 cut(s) 182, 238, 470, 493, 577, 589
FatI CATG 6 cut(s) 178, 234, 466, 489, 573, 585
Fnu4HI GCNGC 3 cut(s) 412, 472, 660
FokI GGATG 3 cut(s) 46, 493, 608
Fsp4HI GCNGC 3 cut(s) 412, 472, 660
FspBI CTAG 2 cut(s) 270, 832
GluI GCNGC 3 cut(s) 412, 472, 660
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 705, 720
HaeIII GGCC 2 cut(s) 19, 396
Hin1II CATG 6 cut(s) 182, 238, 470, 493, 577, 589
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 3 cut(s) 207, 599, 687
HphI GGTGA 2 cut(s) 60, 515
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 1 cut(s) 791
HpyCH4IV ACGT 3 cut(s) 363, 510, 732
HpyCH4V TGCA 6 cut(s) 44, 182, 251, 500, 557, 786
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 3 cut(s) 363, 510, 732
Hsp92II CATG 6 cut(s) 182, 238, 470, 493, 577, 589
Kzo9I GATC 2 cut(s) 3, 523
LmnI GCTCC 1 cut(s) 606
Lsp1109I GCAGC 2 cut(s) 483, 671
LweI GCATC 3 cut(s) 169, 544, 630
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 270, 832
MaeII ACGT 3 cut(s) 363, 510, 732
MaeIII GTNAC 3 cut(s) 383, 563, 800
MalI GATC 2 cut(s) 5, 525
MboI GATC 2 cut(s) 3, 523
MboII GAAGA 6 cut(s) 104, 208, 368, 553, 556, 820
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 523
MluCI AATT 2 cut(s) 495, 664
MlyI GAGTC 2 cut(s) 201, 608
MnlI CCTC 7 cut(s) 30, 134, 407, 610, 726, 729, 763
Mph1103I ATGCAT 1 cut(s) 184
MseI TTAA 3 cut(s) 137, 351, 818
MslI CAYNNNNRTG 1 cut(s) 533
MspR9I CCNGG 4 cut(s) 276, 477, 699, 723
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 4 cut(s) 276, 477, 699, 723
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 656
NcoI CCATGG 1 cut(s) 466
NdeII GATC 2 cut(s) 3, 523
NlaIII CATG 6 cut(s) 182, 238, 470, 493, 577, 589
NlaIV GGNNCC 1 cut(s) 608
NmuCI GTSAC 1 cut(s) 800
NsiI ATGCAT 1 cut(s) 184
NspI RCATGY 1 cut(s) 493
PaeI GCATGC 1 cut(s) 493
PaqCI CACCTGC 1 cut(s) 491
PasI CCCWGGG 1 cut(s) 476
PceI AGGCCT 1 cut(s) 19
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 687
PfoI TCCNGGA 2 cut(s) 697, 721
PkrI GCNGC 3 cut(s) 413, 473, 661
PleI GAGTC 2 cut(s) 201, 607
PpsI GAGTC 2 cut(s) 201, 607
Ppu21I YACGTR 1 cut(s) 511
PshBI ATTAAT 2 cut(s) 351, 818
Psp6I CCWGG 4 cut(s) 274, 475, 697, 721
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 4 cut(s) 274, 475, 697, 721
PspN4I GGNNCC 1 cut(s) 608
PspPI GGNCC 1 cut(s) 431
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 523
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 3 cut(s) 137, 351, 818
SatI GCNGC 3 cut(s) 412, 472, 660
Sau3AI GATC 2 cut(s) 3, 523
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 2 cut(s) 201, 608
ScrFI CCNGG 4 cut(s) 276, 477, 699, 723
SetI ASST 9 cut(s) 205, 277, 366, 420, 505, 513, 565, 595, 735
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 3 cut(s) 169, 544, 630
SfcI CTRYAG 2 cut(s) 154, 654
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
SnaBI TACGTA 1 cut(s) 511
SphI GCATGC 1 cut(s) 493
Sse9I AATT 2 cut(s) 495, 664
SseBI AGGCCT 1 cut(s) 19
SsiI CCGC 3 cut(s) 411, 429, 442
SspI AATATT 1 cut(s) 822
SspMI CTAG 2 cut(s) 270, 832
StuI AGGCCT 1 cut(s) 19
StyD4I CCNGG 4 cut(s) 274, 475, 697, 721
StyI CCWWGG 2 cut(s) 327, 466
TaaI ACNGT 1 cut(s) 791
TaiI ACGT 3 cut(s) 366, 513, 735
TasI AATT 2 cut(s) 495, 664
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 1 cut(s) 687
Tru1I TTAA 3 cut(s) 137, 351, 818
Tru9I TTAA 3 cut(s) 137, 351, 818
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 2 cut(s) 471, 659
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 3 cut(s) 223, 439, 801
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 431
VspI ATTAAT 2 cut(s) 351, 818
XagI CCTNNNNNAGG 2 cut(s) 614, 720
XapI RAATTY 1 cut(s) 664
XceI RCATGY 1 cut(s) 493
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XspI CTAG 2 cut(s) 270, 832
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.