Rh7AG339500

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001085
Physical Location & Seq
Reverse (-)
42763198 .. 42766129
2932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG339500.1

Sequence Viewer

Length: 1428 bp
ATGTTCTTTTGTTATGTAGTTGAATTGGTCACTATGATCCTAATCACAAGGCCTCGCTATGTTTTACTATTCCTTGCATTACTGAGTTTGACATCCATTTCACCATCATCATCATCAAAAGTGGACGATATCAGCAACGGAACAAGATGGGCAGTTCTGATTGCTGGGTCAAGAGGATATGATAACTATAGGCATCAGGCTGATGTATGCCATGCATACCAGATACTGAAGAAAGGACTCAAAGATGAGAATATCATTGTGTTCATGTATGACGATATTGCATTCAACCCAAAAAATCCTAGACCTGGTGTCATTATCAACAAGCCAGATGGAAATGATGTTTATCAAGGAGTTCCCAAGGACTATACAGGAAAGGATATTAATACTCACAACTTCTATGCTGTTCTTCTTGGCAACATAAGTGGCCTCACTGGTGGTAGCGGCAAGGTTCTAAATAGCGGTCCAAACGACCACGTTTTCATTTATTACGCTGACCATGGCAGCCCTGGGATGGTTGGCATGCCAATTGCAGGTGATTACGTATATGCTAAAGATCTCATAGATGTGCTGAAGAAGAAGCACGATGCCAAAGGTTACAAAAGCATGGTGTTTTACATGGAAGCTTGCGAGTCTGGGAGCCTGTTTGAGGGCATCCTTCCCAACAATATAAGCATATACGCAACTACAGCAGCAAATTCAAAAGAGAGCAGTTGGGGATTCTATTGTCCTGGAGACTTCCCTAGTCCTCCTCCAGGATATGACGTTTGCTTGGGAGACTTGTATAGTATTTCTTGGCTTGAGGATTGTGACAAGCATGACTTGAGGAAAGAAACTTTGGCGAAGCAATATGAAGTGGTCCGAAGGAGAACAGCAAATGGCTACTTAGATTCAAGCCATGTCATGCAATTTGGGAATAAGAGACAAAGCGAGGATTTCATCTTCACTTACATGGGTACAAATCCTGAAAATGATAACTATACTTACTTCAAGTACACGGCATCACCAGCGACCTCAAGGCCAAGGGTTGTCAGCCAACGCAACGCAGACCTCCTCCATCTTCGGTACAAGTTCGACAATGCTCCTGATGGCTCCGATGTGAAGCTTGAAGCTCACAAACAGCTCATTGATGAAATTTCTCGGAGGAAAAAGGTGGATCATAACATAAAGCAGATAGGGAAGCTTTTGTTTGGGTATGACAAGAGTTCAGAAGTGATGAAGAATGTTAGGACTCCGGGGGAACCTCTAGCAGATGATTGGGACTGCTTTAAGATGCTTGTGAAAACTTATGAGAAACACTGTGGATTTTTATCAAGTTATGGAAGGAAACACACGAGAGCTATTGCCAACATGTGCAATACTGGAGTTACGCCGGAACAAATGGCTGCTGCATGTGTTCAAACCTGTCATATGAAATCCCCTCTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

475

Amino Acids

53.36

Weight (kDa)

7.89

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 49 - 319 3.9e-112 Peptidase C13 family
Legum_prodom PF20985 372 - 468 8.7e-38 Legumain, prodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 1 cut(s) 521
AciI CCGC 2 cut(s) 441, 459
AclWI GGATC 2 cut(s) 31, 1161
AcsI RAATTY 2 cut(s) 694, 1131
AcuI CTGAAG 2 cut(s) 248, 590
AfaI GTAC 3 cut(s) 955, 992, 1064
AfiI CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
AflIII ACRYGT 1 cut(s) 1347
AgsI TTSAA 7 cut(s) 23, 286, 699, 891, 988, 1106, 1397
AhdI GACNNNNNGTC 1 cut(s) 308
AjnI CCWGG 4 cut(s) 304, 505, 727, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 6 cut(s) 623, 1102, 1109, 1120, 1180, 1337
AluI AGCT 6 cut(s) 623, 1102, 1109, 1120, 1180, 1337
Alw26I GTCTC 3 cut(s) 726, 768, 913
AlwI GGATC 2 cut(s) 31, 1161
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 3 cut(s) 50, 424, 1016
ApeKI GCWGC 4 cut(s) 501, 689, 1382, 1385
ApoI RAATTY 2 cut(s) 694, 1131
AseI ATTAAT 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 461, 856
AsuC2I CCSGG 1 cut(s) 1233
AsuHPI GGTGA 3 cut(s) 93, 545, 993
AvaII GGWCC 2 cut(s) 461, 856
BauI CACGAG 1 cut(s) 1330
BbvI GCAGC 4 cut(s) 513, 701, 1369, 1372
BccI CCATC 6 cut(s) 112, 141, 323, 505, 1062, 1079
BceAI ACGGC 1 cut(s) 1011
BciT130I CCWGG 4 cut(s) 306, 507, 729, 753
BcnI CCSGG 1 cut(s) 1233
BcoDI GTCTC 3 cut(s) 726, 768, 913
BfaI CTAG 3 cut(s) 300, 741, 1244
BfmI CTRYAG 2 cut(s) 187, 684
BfuAI ACCTGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 553
BisI GCNGC 5 cut(s) 442, 502, 690, 1383, 1386
BlsI GCNGC 5 cut(s) 443, 503, 691, 1384, 1387
Bme1390I CCNGG 5 cut(s) 306, 507, 729, 753, 1233
Bme18I GGWCC 2 cut(s) 461, 856
BmeRI GACNNNNNGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 461, 856
BmiI GGNNCC 3 cut(s) 638, 1090, 1239
BmrFI CCNGG 5 cut(s) 306, 507, 729, 753, 1233
BmsI GCATC 5 cut(s) 202, 574, 660, 1007, 1260
BpmI CTGGAG 3 cut(s) 735, 750, 1380
BpuEI CTTGAG 3 cut(s) 818, 841, 997
BpuMI CCSGG 1 cut(s) 1233
BsaAI YACGTR 1 cut(s) 541
BsaBI GATNNNNATC 3 cut(s) 41, 342, 1306
BsaJI CCNNGG 6 cut(s) 357, 496, 505, 506, 1019, 1232
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
Bse1I ACTGG 2 cut(s) 436, 1363
Bse8I GATNNNNATC 3 cut(s) 41, 342, 1306
BseBI CCWGG 4 cut(s) 306, 507, 729, 753
BseDI CCNNGG 6 cut(s) 357, 496, 505, 506, 1019, 1232
BseGI GGATG 3 cut(s) 92, 516, 651
BseJI GATNNNNATC 3 cut(s) 41, 342, 1306
BseLI CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 2 cut(s) 436, 1363
BseRI GAGGAG 2 cut(s) 738, 1040
BseXI GCAGC 4 cut(s) 513, 701, 1369, 1372
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 3 cut(s) 52, 426, 1018
BsiSI CCGG 2 cut(s) 1232, 1370
BslFI GGGAC 1 cut(s) 1271
BslI CCNNNNNNNGG 5 cut(s) 305, 511, 530, 646, 752
BsmAI GTCTC 3 cut(s) 726, 768, 913
BsmFI GGGAC 1 cut(s) 1271
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 3 cut(s) 52, 426, 1018
Bsp143I GATC 3 cut(s) 36, 553, 1153
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 2 cut(s) 441, 459
BspANI GGCC 3 cut(s) 52, 426, 1018
BspCNI CTCAG 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 638, 1090, 1239
BspMI ACCTGC 1 cut(s) 521
BspPI GGATC 2 cut(s) 31, 1161
BsrI ACTGG 2 cut(s) 436, 1363
BssECI CCNNGG 6 cut(s) 357, 496, 505, 506, 1019, 1232
BssMI GATC 3 cut(s) 36, 553, 1153
BssSI CACGAG 1 cut(s) 1330
BssT1I CCWWGG 3 cut(s) 357, 496, 1019
Bst2BI CACGAG 1 cut(s) 1330
Bst2UI CCWGG 4 cut(s) 306, 507, 729, 753
Bst4CI ACNGT 1 cut(s) 1298
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 521, 625
BstDEI CTNAG 2 cut(s) 83, 883
BstDSI CCRYGG 1 cut(s) 496
BstENI CCTNNNNNAGG 2 cut(s) 644, 750
BstF5I GGATG 3 cut(s) 92, 516, 651
BstKTI GATC 3 cut(s) 39, 556, 1156
BstMAI GTCTC 3 cut(s) 726, 768, 913
BstMBI GATC 3 cut(s) 36, 553, 1153
BstMWI GCNNNNNNNGC 2 cut(s) 686, 1004
BstNI CCWGG 4 cut(s) 306, 507, 729, 753
BstNSI RCATGY 3 cut(s) 523, 1351, 1392
BstSCI CCNGG 5 cut(s) 304, 505, 727, 751, 1231
BstSFI CTRYAG 2 cut(s) 187, 684
BstSNI TACGTA 1 cut(s) 541
BstV1I GCAGC 4 cut(s) 513, 701, 1369, 1372
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BsuRI GGCC 3 cut(s) 52, 426, 1018
BtgI CCRYGG 1 cut(s) 496
BtsCI GGATG 3 cut(s) 92, 516, 651
BtsIMutI CAGTG 2 cut(s) 429, 1294
BveI ACCTGC 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 521, 625
CaiI CAGNNNCTG 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 461, 856
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 3 cut(s) 954, 991, 1063
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviQI GTAC 3 cut(s) 954, 991, 1063
DdeI CTNAG 2 cut(s) 83, 883
DpnI GATC 3 cut(s) 38, 555, 1155
DpnII GATC 3 cut(s) 36, 553, 1153
DriI GACNNNNNGTC 1 cut(s) 308
Eam1105I GACNNNNNGTC 1 cut(s) 308
Eco105I TACGTA 1 cut(s) 541
Eco130I CCWWGG 3 cut(s) 357, 496, 1019
Eco147I AGGCCT 1 cut(s) 52
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 2 cut(s) 461, 856
Eco57I CTGAAG 2 cut(s) 248, 590
EcoNI CCTNNNNNAGG 2 cut(s) 644, 750
EcoRII CCWGG 4 cut(s) 304, 505, 727, 751
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 3 cut(s) 357, 496, 1019
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 3 cut(s) 357, 496, 1019
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FaqI GGGAC 1 cut(s) 1271
FauNDI CATATG 1 cut(s) 1407
Fnu4HI GCNGC 5 cut(s) 442, 502, 690, 1383, 1386
FokI GGATG 3 cut(s) 79, 523, 638
Fsp4HI GCNGC 5 cut(s) 442, 502, 690, 1383, 1386
FspBI CTAG 3 cut(s) 300, 741, 1244
GluI GCNGC 5 cut(s) 442, 502, 690, 1383, 1386
GsaI CCCAGC 1 cut(s) 168
GsuI CTGGAG 3 cut(s) 735, 750, 1380
HaeIII GGCC 3 cut(s) 52, 426, 1018
HapII CCGG 2 cut(s) 1232, 1370
HindIII AAGCTT 3 cut(s) 621, 1100, 1178
HinfI GANTC 5 cut(s) 237, 629, 717, 887, 1228
HpaII CCGG 2 cut(s) 1232, 1370
HphI GGTGA 3 cut(s) 93, 545, 993
Hpy166II GTNNAC 2 cut(s) 124, 993
Hpy188I TCNGA 5 cut(s) 159, 860, 1093, 1140, 1207
Hpy188III TCNNGA 3 cut(s) 171, 962, 1082
Hpy8I GTNNAC 2 cut(s) 124, 993
HpyAV CCTTC 3 cut(s) 665, 855, 1314
HpyCH4III ACNGT 1 cut(s) 1298
HpyCH4IV ACGT 3 cut(s) 474, 540, 762
HpyCH4V TGCA 7 cut(s) 77, 215, 281, 530, 904, 1353, 1388
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 1004
HpyF3I CTNAG 2 cut(s) 83, 883
HpySE526I ACGT 3 cut(s) 474, 540, 762
Kzo9I GATC 3 cut(s) 36, 553, 1153
LmnI GCTCC 3 cut(s) 636, 1084, 1094
Lsp1109I GCAGC 4 cut(s) 513, 701, 1369, 1372
LweI GCATC 5 cut(s) 202, 574, 660, 1007, 1260
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 3 cut(s) 300, 741, 1244
MaeII ACGT 3 cut(s) 474, 540, 762
MaeIII GTNAC 4 cut(s) 28, 593, 806, 1363
MalI GATC 3 cut(s) 38, 555, 1155
MboI GATC 3 cut(s) 36, 553, 1153
MboII GAAGA 7 cut(s) 241, 398, 583, 586, 931, 1049, 1228
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 553
MluCI AATT 5 cut(s) 23, 525, 694, 905, 1131
MlyI GAGTC 3 cut(s) 231, 638, 1222
Mph1103I ATGCAT 1 cut(s) 217
MseI TTAA 3 cut(s) 381, 1266, 1426
MslI CAYNNNNRTG 2 cut(s) 563, 947
MspI CCGG 2 cut(s) 1232, 1370
MspR9I CCNGG 5 cut(s) 306, 507, 729, 753, 1233
MunI CAATTG 1 cut(s) 525
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 4 cut(s) 306, 507, 729, 753
MwoI GCNNNNNNNGC 2 cut(s) 686, 1004
NciI CCSGG 1 cut(s) 1233
NcoI CCATGG 1 cut(s) 496
NdeI CATATG 1 cut(s) 1407
NdeII GATC 3 cut(s) 36, 553, 1153
NlaIV GGNNCC 3 cut(s) 638, 1090, 1239
NmuCI GTSAC 2 cut(s) 28, 806
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 3 cut(s) 523, 1351, 1392
PaeI GCATGC 1 cut(s) 523
PaqCI CACCTGC 1 cut(s) 521
PasI CCCWGGG 1 cut(s) 506
PceI AGGCCT 1 cut(s) 52
PciI ACATGT 1 cut(s) 1347
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 717, 887
PfoI TCCNGGA 2 cut(s) 727, 751
PkrI GCNGC 5 cut(s) 443, 503, 691, 1384, 1387
PleI GAGTC 3 cut(s) 231, 637, 1222
PpsI GAGTC 3 cut(s) 231, 637, 1222
Ppu21I YACGTR 1 cut(s) 541
PscI ACATGT 1 cut(s) 1347
PshBI ATTAAT 1 cut(s) 381
Psp6I CCWGG 4 cut(s) 304, 505, 727, 751
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 4 cut(s) 304, 505, 727, 751
PspN4I GGNNCC 3 cut(s) 638, 1090, 1239
PspPI GGNCC 2 cut(s) 461, 856
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 3 cut(s) 955, 992, 1064
RsaNI GTAC 3 cut(s) 954, 991, 1063
RseI CAYNNNNRTG 2 cut(s) 563, 947
SaqAI TTAA 3 cut(s) 381, 1266, 1426
SatI GCNGC 5 cut(s) 442, 502, 690, 1383, 1386
Sau3AI GATC 3 cut(s) 36, 553, 1153
Sau96I GGNCC 2 cut(s) 461, 856
SchI GAGTC 3 cut(s) 231, 638, 1222
ScrFI CCNGG 5 cut(s) 306, 507, 729, 753, 1233
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 5 cut(s) 202, 574, 660, 1007, 1260
SfcI CTRYAG 2 cut(s) 187, 684
SinI GGWCC 2 cut(s) 461, 856
SmiMI CAYNNNNRTG 2 cut(s) 563, 947
SmlI CTYRAG 3 cut(s) 797, 820, 1012
SmoI CTYRAG 3 cut(s) 797, 820, 1012
SnaBI TACGTA 1 cut(s) 541
SphI GCATGC 1 cut(s) 523
Sse9I AATT 5 cut(s) 23, 525, 694, 905, 1131
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 2 cut(s) 441, 459
SspMI CTAG 3 cut(s) 300, 741, 1244
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 5 cut(s) 304, 505, 727, 751, 1231
StyI CCWWGG 3 cut(s) 357, 496, 1019
TaaI ACNGT 1 cut(s) 1298
TaiI ACGT 3 cut(s) 477, 543, 765
TaqI TCGA 1 cut(s) 1071
TasI AATT 5 cut(s) 23, 525, 694, 905, 1131
TatI WGTACW 1 cut(s) 990
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 2 cut(s) 717, 887
Tru1I TTAA 3 cut(s) 381, 1266, 1426
Tru9I TTAA 3 cut(s) 381, 1266, 1426
TscAI CASTG 2 cut(s) 436, 1301
TseFI GTSAC 2 cut(s) 28, 806
TseI GCWGC 4 cut(s) 501, 689, 1382, 1385
Tsp45I GTSAC 2 cut(s) 28, 806
TspDTI ATGAA 7 cut(s) 253, 469, 864, 925, 1143, 1229, 1424
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 2 cut(s) 436, 1301
VpaK11BI GGWCC 2 cut(s) 461, 856
VspI ATTAAT 1 cut(s) 381
XagI CCTNNNNNAGG 2 cut(s) 644, 750
XapI RAATTY 2 cut(s) 694, 1131
XceI RCATGY 3 cut(s) 523, 1351, 1392
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
XspI CTAG 3 cut(s) 300, 741, 1244
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.