AT3G52460

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001089
Physical Location & Seq
Forward (+)
19446637 .. 19448002
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52460.1

Sequence Viewer

Length: 903 bp
ATGCCTTCTCCTCCGGAAGAAGAAACCCAACCCAAACCCGATACGGGTCCGGGTCAAAACTCCGAACGCGATATTAATCAACCACCACCACCTCCACCACAATCTCAACCGCCTCCACCGCAGACGCAACAGCAAACGTACCCGCCGGTAATGGGCTATCCAGGCTACCATCAACCGCCTCCACCATACCCAAATTATCCAAACGCACCTTACCAACAATACCCTTACGCACAAGCCCCACCCGCTTCATATTACGGTTCATCTTACCCGGCTCAGCAAAATCCGGTTTACCAAAGACCAGCTTCGTCCGGGTTCGTCAGAGGAATTTTCACCGGTTTAATCGTTTTAGTCGTCCTCCTCTGCATCTCCACCACCATAACGTGGCTAGTCCTCCGTCCTCAAATACCGCTTTTCTCCGTAAACAATTTCTCAGTTTCCAATTTCAACGTAACCGGTCCGGTTTTCTCCGCGCAATGGACGGCGAATCTCACAATCGAGAATCAAAACACGAAATTGAAAGGCTACTTTGATCGAATCCAAGGTTTAGTATACCACCAAAACGCGGTCGGAGAAGACGAATTTTTAGCGACGGCGTTTTTTCAACCGGTTTTCGTGGAGACCAAGAAATCGGTTGTGATCGGAGAAACTTTGACCGCGGGAGATAAAGAACAACCGAAAGTTCCGAGTTGGGTTGTTGATGAGATGAAGAAAGAGAGAGAGACCGGAACGGTGACGTTTAGCCTGAGAATGGCCGTGTGGGTTACTTTTAAGACCGATGGTTGGGCGGCGCGTGAGAGCGGGCTTAAGGTGTTTTGCGGGAAATTAAAAGTTGGGTTTGAAGGAATTTCTGGAAACGGTGCCGTTTTGTTGCCTAAGCCTCTTCCTTGTGTGGTTTACGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

300

Amino Acids

33.15

Weight (kDa)

6.74

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 857
AccB7I CCANNNNNTGG 1 cut(s) 381
AccBSI CCGCTC 1 cut(s) 798
AccI GTMKAC 1 cut(s) 549
AccII CGCG 5 cut(s) 69, 470, 563, 656, 790
AccIII TCCGGA 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 3 cut(s) 324, 578, 843
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 7 cut(s) 44, 152, 381, 474, 562, 748, 780
AflII CTTAAG 1 cut(s) 803
AgeI ACCGGT 3 cut(s) 332, 452, 604
AgsI TTSAA 4 cut(s) 445, 517, 602, 839
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 2 cut(s) 611, 713
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 1 cut(s) 750
ApoI RAATTY 3 cut(s) 324, 578, 843
AseI ATTAAT 1 cut(s) 75
AsiGI ACCGGT 3 cut(s) 332, 452, 604
AspLEI GCGC 2 cut(s) 472, 790
AspS9I GGNCC 2 cut(s) 47, 455
AsuC2I CCSGG 3 cut(s) 51, 269, 310
AsuHPI GGTGA 2 cut(s) 322, 742
AvaII GGWCC 2 cut(s) 47, 455
BanI GGYRCC 1 cut(s) 857
BbsI GAAGAC 1 cut(s) 579
BccI CCATC 2 cut(s) 177, 770
BceAI ACGGC 4 cut(s) 495, 606, 737, 845
BciT130I CCWGG 1 cut(s) 162
BcnI CCSGG 3 cut(s) 51, 269, 310
BcoDI GTCTC 2 cut(s) 611, 713
BfaI CTAG 1 cut(s) 386
BfrI CTTAAG 1 cut(s) 803
BisI GCNGC 1 cut(s) 786
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 787
Bme1390I CCNGG 4 cut(s) 51, 162, 269, 310
Bme18I GGWCC 2 cut(s) 47, 455
BmgT120I GGNCC 2 cut(s) 47, 455
BmiI GGNNCC 2 cut(s) 48, 859
BmrFI CCNGG 4 cut(s) 51, 162, 269, 310
BmsI GCATC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 273
BpuMI CCSGG 3 cut(s) 51, 269, 310
BsaBI GATNNNNATC 1 cut(s) 75
BsaI GGTCTC 2 cut(s) 611, 713
BsaJI CCNNGG 2 cut(s) 538, 654
BsaWI WCCGGW 7 cut(s) 13, 283, 332, 452, 457, 604, 722
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 152, 381, 474, 562, 748, 780
Bse118I RCCGGY 4 cut(s) 145, 332, 452, 604
Bse3DI GCAATG 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 75
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 538, 654
BseJI GATNNNNATC 1 cut(s) 75
BseLI CCNNNNNNNGG 7 cut(s) 44, 152, 381, 474, 562, 748, 780
BseMI GCAATG 1 cut(s) 479
BseMII CTCAG 3 cut(s) 287, 444, 734
BseRI GAGGAG 1 cut(s) 347
Bsh1236I CGCG 5 cut(s) 69, 470, 563, 656, 790
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 1 cut(s) 752
BshNI GGYRCC 1 cut(s) 857
BshTI ACCGGT 3 cut(s) 332, 452, 604
BsiEI CGRYCG 1 cut(s) 567
BslI CCNNNNNNNGG 7 cut(s) 44, 152, 381, 474, 562, 748, 780
BsmAI GTCTC 2 cut(s) 611, 713
BsnI GGCC 1 cut(s) 752
Bso31I GGTCTC 2 cut(s) 611, 713
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 2 cut(s) 529, 636
Bsp1720I GCTNAGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 752
BspCNI CTCAG 3 cut(s) 286, 443, 735
BspEI TCCGGA 1 cut(s) 13
BspFNI CGCG 5 cut(s) 69, 470, 563, 656, 790
BspLI GGNNCC 2 cut(s) 48, 859
BspT107I GGYRCC 1 cut(s) 857
BspTI CTTAAG 1 cut(s) 803
BspTNI GGTCTC 2 cut(s) 611, 713
BsrBI CCGCTC 1 cut(s) 798
BsrDI GCAATG 1 cut(s) 479
BsrFI RCCGGY 4 cut(s) 145, 332, 452, 604
BssAI RCCGGY 4 cut(s) 145, 332, 452, 604
BssECI CCNNGG 2 cut(s) 538, 654
BssMI GATC 2 cut(s) 529, 636
BssNAI GTATAC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 538
Bst1107I GTATAC 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 257, 730, 857
Bst6I CTCTTC 1 cut(s) 885
BstAFI CTTAAG 1 cut(s) 803
BstC8I GCNNGC 1 cut(s) 800
BstDEI CTNAG 4 cut(s) 273, 430, 743, 873
BstDSI CCRYGG 1 cut(s) 654
BstFNI CGCG 5 cut(s) 69, 470, 563, 656, 790
BstHHI GCGC 2 cut(s) 472, 790
BstKTI GATC 2 cut(s) 532, 639
BstMAI GTCTC 2 cut(s) 611, 713
BstMBI GATC 2 cut(s) 529, 636
BstMCI CGRYCG 1 cut(s) 567
BstMWI GCNNNNNNNGC 3 cut(s) 118, 162, 242
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 4 cut(s) 49, 160, 267, 308
BstUI CGCG 5 cut(s) 69, 470, 563, 656, 790
BstV2I GAAGAC 1 cut(s) 579
BstZ17I GTATAC 1 cut(s) 550
BsuRI GGCC 1 cut(s) 752
BtgI CCRYGG 1 cut(s) 654
Cac8I GCNNGC 1 cut(s) 800
CfoI GCGC 2 cut(s) 472, 790
Cfr10I RCCGGY 4 cut(s) 145, 332, 452, 604
Cfr13I GGNCC 2 cut(s) 47, 455
Cfr42I CCGCGG 1 cut(s) 657
CpoI CGGWCCG 1 cut(s) 455
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 139
CspAI ACCGGT 3 cut(s) 332, 452, 604
CspI CGGWCCG 1 cut(s) 455
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 4 cut(s) 273, 430, 743, 873
DpnI GATC 2 cut(s) 531, 638
DpnII GATC 2 cut(s) 529, 636
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 1 cut(s) 885
EarI CTCTTC 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 538
Eco31I GGTCTC 2 cut(s) 611, 713
Eco47I GGWCC 2 cut(s) 47, 455
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 538
ErhI CCWWGG 1 cut(s) 538
FaiI YATR 4 cut(s) 187, 250, 377, 550
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FauI CCCGC 5 cut(s) 150, 250, 649, 791, 809
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 786
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 471, 789
GluI GCNGC 1 cut(s) 786
HaeIII GGCC 1 cut(s) 752
HgaI GACGC 1 cut(s) 133
HhaI GCGC 2 cut(s) 472, 790
Hin6I GCGC 2 cut(s) 470, 788
HinP1I GCGC 2 cut(s) 470, 788
HinfI GANTC 3 cut(s) 484, 499, 534
HphI GGTGA 2 cut(s) 322, 742
Hpy166II GTNNAC 4 cut(s) 289, 421, 550, 895
Hpy188I TCNGA 5 cut(s) 64, 320, 569, 641, 684
Hpy188III TCNNGA 3 cut(s) 14, 496, 849
Hpy8I GTNNAC 4 cut(s) 289, 421, 550, 895
Hpy99I CGWCG 1 cut(s) 592
HpyAV CCTTC 2 cut(s) 15, 833
HpyCH4III ACNGT 3 cut(s) 257, 730, 857
HpyCH4IV ACGT 5 cut(s) 137, 380, 447, 734, 897
HpyCH4V TGCA 1 cut(s) 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 162, 242
HpyF3I CTNAG 4 cut(s) 273, 430, 743, 873
HpySE526I ACGT 5 cut(s) 137, 380, 447, 734, 897
HspAI GCGC 2 cut(s) 470, 788
Kpn2I TCCGGA 1 cut(s) 13
KspI CCGCGG 1 cut(s) 657
Kzo9I GATC 2 cut(s) 529, 636
LweI GCATC 1 cut(s) 372
MaeI CTAG 1 cut(s) 386
MaeII ACGT 5 cut(s) 137, 380, 447, 734, 897
MaeIII GTNAC 3 cut(s) 448, 730, 760
MalI GATC 2 cut(s) 531, 638
MbiI CCGCTC 1 cut(s) 798
MboI GATC 2 cut(s) 529, 636
MboII GAAGA 5 cut(s) 29, 32, 584, 718, 872
MluCI AATT 8 cut(s) 193, 324, 424, 439, 512, 578, 821, 843
MmeI TCCRAC 1 cut(s) 547
MroI TCCGGA 1 cut(s) 13
MseI TTAA 5 cut(s) 75, 338, 768, 804, 824
MspA1I CMGCKG 1 cut(s) 656
MspCI CTTAAG 1 cut(s) 803
MspR9I CCNGG 4 cut(s) 51, 162, 269, 310
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 5 cut(s) 69, 470, 563, 656, 790
MwoI GCNNNNNNNGC 3 cut(s) 118, 162, 242
NciI CCSGG 3 cut(s) 51, 269, 310
NdeII GATC 2 cut(s) 529, 636
NlaIV GGNNCC 2 cut(s) 48, 859
NmuCI GTSAC 1 cut(s) 730
PcsI WCGNNNNNNNCGW 2 cut(s) 348, 573
PfeI GAWTC 3 cut(s) 484, 499, 534
PflMI CCANNNNNTGG 1 cut(s) 381
PinAI ACCGGT 3 cut(s) 332, 452, 604
PkrI GCNGC 1 cut(s) 787
PshBI ATTAAT 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 48, 859
PspPI GGNCC 2 cut(s) 47, 455
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
Rsr2I CGGWCCG 1 cut(s) 455
RsrII CGGWCCG 1 cut(s) 455
SacII CCGCGG 1 cut(s) 657
SaqAI TTAA 5 cut(s) 75, 338, 768, 804, 824
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 2 cut(s) 529, 636
Sau96I GGNCC 2 cut(s) 47, 455
ScrFI CCNGG 4 cut(s) 51, 162, 269, 310
SfaNI GCATC 1 cut(s) 372
Sfr303I CCGCGG 1 cut(s) 657
SgrBI CCGCGG 1 cut(s) 657
SinI GGWCC 2 cut(s) 47, 455
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
Sse9I AATT 8 cut(s) 193, 324, 424, 439, 512, 578, 821, 843
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 4 cut(s) 49, 160, 267, 308
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 3 cut(s) 257, 730, 857
TaiI ACGT 5 cut(s) 140, 383, 450, 737, 900
TaqI TCGA 2 cut(s) 495, 532
TaqII GACCGA 1 cut(s) 788
TasI AATT 8 cut(s) 193, 324, 424, 439, 512, 578, 821, 843
TauI GCSGC 1 cut(s) 788
TfiI GAWTC 3 cut(s) 484, 499, 534
Tru1I TTAA 5 cut(s) 75, 338, 768, 804, 824
Tru9I TTAA 5 cut(s) 75, 338, 768, 804, 824
TseFI GTSAC 1 cut(s) 730
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 3 cut(s) 237, 249, 719
TspGWI ACGGA 2 cut(s) 383, 406
Van91I CCANNNNNTGG 1 cut(s) 381
Vha464I CTTAAG 1 cut(s) 803
VpaK11BI GGWCC 2 cut(s) 47, 455
VspI ATTAAT 1 cut(s) 75
XapI RAATTY 3 cut(s) 324, 578, 843
XmiI GTMKAC 1 cut(s) 549
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.