Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001089

Physical Location & Seq

Genomic Coordinates Reverse (-)

39687475 .. 39688720

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTTCTTTTTCACCATCATCAAAGCATGCAATAGTTCCATTGCTTCCAGTTTCTTACCAGCCCAATTCCATAAAATCCCAGAGTTCAAGAATTCGTCGAGAGCTTTCTCTAGGTCCCCAAGCTCCCCTCGTCCAAATCACTGCCTTATCCGTCCACAAATTTAATGTCTCCGAAACAAACTTGACAGCCGAATGGGATGTCAAGTTCAGAATGGAGAACCCAAACCTCGTTTCTTACATCTCTTTCGACCGCGTCGAGGGCTTCATTCTGTCCGAGGACACGGTGCCATTAGCCATAAAGTCGATCGAGCCGTTCGAGTTGACCATGAGGACAGAGAAAGAAGTGCATATGAGGGTGGCGATGAACAAGTGGGATGGCGAGCAGCCGGCGCTAAAACAAGGGGTGTTGGAGAAGATGATGAAGGATAGGGAAACAGGGGGAGTAAGGTTCGGCGTGCAGATGGCGATTTGGGCCACGTATAGGACTGGTTGGTTGTGGAAGAGGCAGCATGTGATTATGAATCCTCAATGTTTGGATTTGCCAGTGGCGTTTGTGCCTGGCACCACCACCATAGGTTTTGGAATTTTGATGGGTGCTGTGCCTTGGACGTGCTACGTTCCCATGCTAGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

212

Amino Acids

23.93

Weight (kDa)

8.55

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52460
fragaria_vesca	FvH4_3g40821 FvH4_5g22901 FvH4_6g24970
malus_domestica	MD07G1151300.v1.1 MD12G1039100.v1.1 MD12G1087900.v1.1 MD14G1037800.v1.1 MD14G1037900.v1.1
prunus_persica	Prupe.7G048100_v2.0.a1 Prupe.7G096300_v2.0.a1 Prupe.7G096500_v2.0.a1 Prupe.7G096700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124701 RchiOBHm_Chr3g0475771 RchiOBHm_Chr5g0073621 RchiOBHm_Chr7g0211331 RchiOBHm_Chr7g0211341
rosa_laevigata	RLG00000003008 RLG00000003009 RLG00000018813 RLG00000023818 RLG00000036394
rosa_multiflora	Rmu_sc0000539.1_g000081 Rmu_sc0001226.1_g000003 Rmu_ssc0000242.1_g000009 Rmu_ssc0000242.1_g000017
rosa_roxburghii	Rroxscaffold_2G00119740 Rroxscaffold_3G00247920
rosa_rugosa	Rorug02G0251900 Rorug04G0403500.1 Rorug05G0424700 Rorug05G0425600 Rorug05G0425600 Rorug07G0125100 Rorug07G0125200 Rorug07G0170100
rosa_samantha	Rh2AG310900 Rh2CG298300 Rh2DG334900 Rh3AG201100 Rh3CG226100 Rh3DG226700 Rh5CG526300 Rh5CG526600 Rh5DG029800 Rh5DG515500 Rh5DG515600 Rh7AG257500 Rh7AG257600 Rh7BG251600 Rh7BG251700 Rh7DG264200 Rh7DG264300 Rh7DG309500
rosa_wichuraiana	Rw2G025150 Rw3G018290 Rw5G044820 Rw7G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	286, 563
AccII	CGCG	1 cut(s)	255
AciI	CCGC	1 cut(s)	253
AcsI	RAATTY	3 cut(s)	93, 161, 585
AfiI	CCNNNNNNNGG	2 cut(s)	259, 483
AgsI	TTSAA	1 cut(s)	90
AjiI	CACGTC	1 cut(s)	612
AjnI	CCWGG	1 cut(s)	559
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	2 cut(s)	106, 125
AluI	AGCT	2 cut(s)	106, 125
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	385, 508
ApoI	RAATTY	3 cut(s)	93, 161, 585
ArsI	GACNNNNNNTTYG	4 cut(s)	153, 185, 186, 218
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	116, 474
AsuHPI	GGTGA	1 cut(s)	6
AsuNHI	GCTAGC	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	116
BanI	GGYRCC	2 cut(s)	286, 563
BbvI	GCAGC	2 cut(s)	397, 520
BccI	CCATC	4 cut(s)	25, 371, 457, 586
BceAI	ACGGC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	113, 629
BfoI	RGCGCY	1 cut(s)	395
BisI	GCNGC	2 cut(s)	386, 509
BlsI	GCNGC	2 cut(s)	387, 510
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	612
BmgT120I	GGNCC	2 cut(s)	116, 474
BmiI	GGNNCC	3 cut(s)	118, 288, 565
BmrFI	CCNGG	1 cut(s)	561
BmtI	GCTAGC	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	276, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 483
Bse118I	RCCGGY	1 cut(s)	388
Bse1I	ACTGG	3 cut(s)	50, 493, 545
Bse3DI	GCAATG	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	276, 605
BseGI	GGATG	2 cut(s)	205, 382
BseLI	CCNNNNNNNGG	2 cut(s)	259, 483
BseMI	GCAATG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	50, 493, 545
BseXI	GCAGC	2 cut(s)	397, 520
BsgI	GTGCAG	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	2 cut(s)	253, 309
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	2 cut(s)	286, 563
BsiEI	CGRYCG	2 cut(s)	253, 309
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	259, 483
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	476
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	3 cut(s)	118, 288, 565
BspOI	GCTAGC	1 cut(s)	632
BspT107I	GGYRCC	2 cut(s)	286, 563
BsrDI	GCAATG	1 cut(s)	41
BsrFI	RCCGGY	1 cut(s)	388
BsrI	ACTGG	3 cut(s)	50, 493, 545
BssAI	RCCGGY	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	276, 605
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	480
BstC8I	GCNNGC	5 cut(s)	30, 383, 390, 458, 630
BstF5I	GGATG	2 cut(s)	205, 382
BstFNI	CGCG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	306
BstMCI	CGRYCG	2 cut(s)	253, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	261, 391, 473
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	2 cut(s)	32, 515
BstSCI	CCNGG	1 cut(s)	559
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	397, 520
BsuRI	GGCC	1 cut(s)	476
BtgZI	GCGATG	1 cut(s)	377
BtrI	CACGTC	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	205, 382
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	141, 552
Cac8I	GCNNGC	5 cut(s)	30, 383, 390, 458, 630
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	116, 474
CseI	GACGC	1 cut(s)	244
CviAII	CATG	4 cut(s)	29, 328, 512, 625
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	4 cut(s)	32, 331, 515, 628
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	4 cut(s)	28, 327, 511, 624
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	386, 509
FokI	GGATG	2 cut(s)	212, 389
Fsp4HI	GCNGC	2 cut(s)	386, 509
FspBI	CTAG	2 cut(s)	113, 629
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	2 cut(s)	386, 509
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	1 cut(s)	389
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	4 cut(s)	32, 331, 515, 628
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HinfI	GANTC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	157, 324
Hpy188I	TCNGA	3 cut(s)	175, 212, 277
Hpy188III	TCNNGA	2 cut(s)	90, 101
Hpy8I	GTNNAC	2 cut(s)	157, 324
Hpy99I	CGWCG	2 cut(s)	102, 260
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	3 cut(s)	479, 611, 618
HpyCH4V	TGCA	3 cut(s)	32, 349, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	261, 391, 473
HpySE526I	ACGT	3 cut(s)	479, 611, 618
Hsp92II	CATG	4 cut(s)	32, 331, 515, 628
HspAI	GCGC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	388
KroNI	GCCGGC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	63, 74, 95, 402, 423, 474, 546, 558, 573
Lsp1109I	GCAGC	2 cut(s)	397, 520
MaeI	CTAG	2 cut(s)	113, 629
MaeII	ACGT	3 cut(s)	479, 611, 618
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	2 cut(s)	427, 514
MluCI	AATT	4 cut(s)	67, 93, 161, 585
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	8 cut(s)	140, 239, 253, 271, 324, 348, 498, 537
MroNI	GCCGGC	1 cut(s)	388
MseI	TTAA	2 cut(s)	165, 637
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	3 cut(s)	261, 391, 473
NaeI	GCCGGC	1 cut(s)	390
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	1 cut(s)	306
NgoMIV	GCCGGC	1 cut(s)	388
NheI	GCTAGC	1 cut(s)	628
NlaIII	CATG	4 cut(s)	32, 331, 515, 628
NlaIV	GGNNCC	3 cut(s)	118, 288, 565
NspI	RCATGY	2 cut(s)	32, 515
PaeI	GCATGC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	3 cut(s)	255, 311, 315
PdiI	GCCGGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	523
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	387, 510
Ple19I	CGATCG	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	3 cut(s)	118, 288, 565
PspPI	GGNCC	2 cut(s)	116, 474
PspPPI	RGGWCCY	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	254
PvuI	CGATCG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	165, 637
SatI	GCNGC	2 cut(s)	386, 509
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	2 cut(s)	116, 474
ScrFI	CCNGG	1 cut(s)	561
SetI	ASST	9 cut(s)	108, 118, 127, 231, 452, 482, 580, 614, 621
SinI	GGWCC	1 cut(s)	116
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	4 cut(s)	67, 93, 161, 585
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	113, 629
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	3 cut(s)	482, 614, 621
TaqI	TCGA	6 cut(s)	100, 249, 258, 305, 309, 318
TasI	AATT	4 cut(s)	67, 93, 161, 585
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	2 cut(s)	165, 637
Tru9I	TTAA	2 cut(s)	165, 637
TscAI	CASTG	2 cut(s)	148, 552
TseI	GCWGC	2 cut(s)	385, 508
TspDTI	ATGAA	4 cut(s)	256, 380, 437, 536
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	148, 552
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	3 cut(s)	93, 161, 585
XceI	RCATGY	2 cut(s)	32, 515
XspI	CTAG	2 cut(s)	113, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.