Rorug07G0170100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001089
Physical Location & Seq
Forward (+)
13788682 .. 13791411
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0170100.1

Sequence Viewer

Length: 939 bp
ATGATGGTTACAGGAAAAAATCTCTTTGTTATGAAGATGAACAACAAGTACAACTTCAGAAATCAGGGAGAGATGGGGAATGATCTCATTTCACGTATATTCATGAGCTTAAGTGTCATGGATGTCATTCACTGCGGAAGTGTTTGCTGCTCTTGGAGGGAAGTTTCTTCCAATACCAGACTTTGGAAGACTATAGACTTAACTAAGGTGGACTCAGAAATATTTCTTCAATCTAGGTCAGGCCATATTGCTATGGGAATTTTGAATGCTGTTTTCAGTCGTGGTAAAGATGTTACTTGCCTGGTTTTTAACTACTACTTTTACATGAGGAATAGTTATTTGATCCATGTTTCTCAAAGAATACTGAATCTAAAAAGACTAGTTCTACCGGTGATTGGTAAGCACTGTAATAAATTCGCGGAGATGAAATTGATGTGTGATTTTTATGAGGAGTACGCAGAGGCAGTTGCTGCCTACATACCAAACTTAAAGGTCTTGAGCCTTAGGTGCGCTGAAGTGTCCAGGGGAGCTGTGCTTCACATACTGAATGAAATGAATCATTTGCAAGTGCTCAATTTATCTCACTCCTACATTGTGGACCACGCTCCAACACCAAACCGCTGCATAGTAGTACTCCGTGAACTTGATCAGATGGTCATTGAAGCAGCATCATGGCTGAAGAAATTTCTTTTCAGTCGTAGCAGACTCTACTGCAACATTTGCAGGCTTCAGTTAAGTATGAATGGAGTGCTGATGCGGTGCAGATATGAAGAACGAGTTTGGAGAATGGATGAGGGTTGGCGTGAGCGTGGTGGTTGTCGTATGGCTTCGGGGTGGCTGGAGATGAGGACTGAGCTGATCTTCTTGGGCCCGAACCCTCCGATGTTAGGTGGTGGTTCAGGGGTTTGGGATTTGGATTCAGGAACGTCTTGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

312

Amino Acids

36.0

Weight (kDa)

8.98

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 63 9.1e-06 F-box domain
F-box-like PF12937 28 - 67 2.1e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 183
AccII CGCG 1 cut(s) 419
AciI CCGC 4 cut(s) 135, 419, 619, 757
AclWI GGATC 1 cut(s) 337
AcsI RAATTY 3 cut(s) 258, 413, 683
AcuI CTGAAG 4 cut(s) 40, 534, 698, 713
AfaI GTAC 3 cut(s) 50, 455, 633
AfiI CCNNNNNNNGG 3 cut(s) 183, 395, 887
AflII CTTAAG 1 cut(s) 109
AgeI ACCGGT 1 cut(s) 388
AgsI TTSAA 3 cut(s) 230, 265, 662
AhlI ACTAGT 1 cut(s) 379
AjnI CCWGG 2 cut(s) 300, 521
AluBI AGCT 3 cut(s) 108, 530, 856
AluI AGCT 3 cut(s) 108, 530, 856
Alw21I GWGCWC 1 cut(s) 573
AlwI GGATC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 2 cut(s) 241, 868
ApaI GGGCCC 1 cut(s) 872
ApeKI GCWGC 4 cut(s) 147, 470, 621, 665
ApoI RAATTY 3 cut(s) 258, 413, 683
AsiGI ACCGGT 1 cut(s) 388
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 4 cut(s) 598, 868, 869, 933
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 2 cut(s) 598, 933
AxyI CCTNAGG 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 872
BanII GRGCYC 1 cut(s) 872
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 4 cut(s) 134, 457, 608, 677
BccI CCATC 2 cut(s) 67, 646
BciT130I CCWGG 2 cut(s) 302, 523
BclI TGATCA 1 cut(s) 646
BcuI ACTAGT 1 cut(s) 379
BfaI CTAG 2 cut(s) 234, 380
BfmI CTRYAG 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 109
BisI GCNGC 4 cut(s) 148, 471, 622, 666
BlsI GCNGC 4 cut(s) 149, 472, 623, 667
BmcAI AGTACT 1 cut(s) 633
Bme1390I CCNGG 2 cut(s) 302, 523
Bme18I GGWCC 2 cut(s) 598, 933
BmgT120I GGNCC 4 cut(s) 598, 868, 869, 933
BmiI GGNNCC 1 cut(s) 870
BmrFI CCNGG 2 cut(s) 302, 523
BmsI GCATC 2 cut(s) 677, 744
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 860
BpuEI CTTGAG 1 cut(s) 517
BsaAI YACGTR 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 395, 887
Bse118I RCCGGY 1 cut(s) 388
Bse21I CCTNAGG 1 cut(s) 503
BseBI CCWGG 2 cut(s) 302, 523
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 2 cut(s) 127, 796
BseLI CCNNNNNNNGG 3 cut(s) 183, 395, 887
BseMII CTCAG 2 cut(s) 228, 843
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 872
BseXI GCAGC 4 cut(s) 134, 457, 608, 677
BsgI GTGCAG 1 cut(s) 781
Bsh1236I CGCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 243, 870
BshTI ACCGGT 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 573
BsiSI CCGG 1 cut(s) 389
BslI CCNNNNNNNGG 3 cut(s) 183, 395, 887
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 243, 870
Bsp120I GGGCCC 1 cut(s) 868
Bsp1286I GDGCHC 2 cut(s) 573, 872
Bsp143I GATC 4 cut(s) 82, 342, 646, 858
BspACI CCGC 4 cut(s) 135, 419, 619, 757
BspANI GGCC 2 cut(s) 243, 870
BspCNI CTCAG 2 cut(s) 227, 844
BspFNI CGCG 1 cut(s) 419
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 870
BspPI GGATC 1 cut(s) 337
BspTI CTTAAG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 388
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 4 cut(s) 82, 342, 646, 858
Bst2UI CCWGG 2 cut(s) 302, 523
Bst4CI ACNGT 1 cut(s) 407
BstAFI CTTAAG 1 cut(s) 109
BstAPI GCANNNNNTGC 2 cut(s) 470, 720
BstBAI YACGTR 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 725
BstDEI CTNAG 4 cut(s) 204, 214, 503, 852
BstF5I GGATG 2 cut(s) 127, 796
BstFNI CGCG 1 cut(s) 419
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 4 cut(s) 85, 345, 649, 861
BstMBI GATC 4 cut(s) 82, 342, 646, 858
BstMWI GCNNNNNNNGC 3 cut(s) 470, 507, 720
BstNI CCWGG 2 cut(s) 302, 523
BstSCI CCNGG 2 cut(s) 300, 521
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 872
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 4 cut(s) 134, 457, 608, 677
BstV2I GAAGAC 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 503
BsuRI GGCC 2 cut(s) 243, 870
BtsCI GGATG 2 cut(s) 127, 796
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 403
Cac8I GCNNGC 1 cut(s) 725
CaiI CAGNNNCTG 1 cut(s) 470
CciI TCATGA 1 cut(s) 102
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 4 cut(s) 598, 868, 869, 933
Csp6I GTAC 3 cut(s) 49, 454, 632
CspAI ACCGGT 1 cut(s) 388
CviAII CATG 5 cut(s) 103, 118, 325, 347, 672
CviQI GTAC 3 cut(s) 49, 454, 632
DdeI CTNAG 4 cut(s) 204, 214, 503, 852
DpnI GATC 4 cut(s) 84, 344, 648, 860
DpnII GATC 4 cut(s) 82, 342, 646, 858
Eco24I GRGCYC 1 cut(s) 872
Eco47I GGWCC 2 cut(s) 598, 933
Eco57I CTGAAG 4 cut(s) 40, 534, 698, 713
Eco81I CCTNAGG 1 cut(s) 503
EcoRII CCWGG 2 cut(s) 300, 521
EcoT38I GRGCYC 1 cut(s) 872
FaeI CATG 5 cut(s) 106, 121, 328, 350, 675
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 5 cut(s) 102, 117, 324, 346, 671
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 4 cut(s) 148, 471, 622, 666
FokI GGATG 2 cut(s) 134, 803
FriOI GRGCYC 1 cut(s) 872
Fsp4HI GCNGC 4 cut(s) 148, 471, 622, 666
FspBI CTAG 2 cut(s) 234, 380
GlaI GCGC 1 cut(s) 511
GluI GCNGC 4 cut(s) 148, 471, 622, 666
GsuI CTGGAG 1 cut(s) 860
HaeIII GGCC 2 cut(s) 243, 870
HapII CCGG 1 cut(s) 389
HhaI GCGC 1 cut(s) 512
Hin1II CATG 5 cut(s) 106, 121, 328, 350, 675
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 5 cut(s) 212, 367, 556, 705, 917
HpaII CCGG 1 cut(s) 389
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 3 cut(s) 211, 598, 641
Hpy188I TCNGA 4 cut(s) 59, 217, 651, 882
Hpy188III TCNNGA 3 cut(s) 103, 496, 921
Hpy8I GTNNAC 3 cut(s) 211, 598, 641
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 2 cut(s) 94, 926
HpyCH4V TGCA 5 cut(s) 565, 624, 714, 723, 762
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 507, 720
HpyF3I CTNAG 4 cut(s) 204, 214, 503, 852
HpySE526I ACGT 2 cut(s) 94, 926
Hsp92II CATG 5 cut(s) 106, 121, 328, 350, 675
HspAI GCGC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 82, 342, 646, 858
LmnI GCTCC 2 cut(s) 527, 610
Lsp1109I GCAGC 4 cut(s) 134, 457, 608, 677
LweI GCATC 2 cut(s) 677, 744
MaeI CTAG 2 cut(s) 234, 380
MaeII ACGT 2 cut(s) 94, 926
MaeIII GTNAC 2 cut(s) 7, 292
MalI GATC 4 cut(s) 84, 344, 648, 860
MboI GATC 4 cut(s) 82, 342, 646, 858
MboII GAAGA 7 cut(s) 46, 159, 199, 218, 691, 782, 853
MhlI GDGCHC 2 cut(s) 573, 872
MluCI AATT 5 cut(s) 258, 413, 428, 574, 683
MlyI GAGTC 2 cut(s) 206, 699
MmeI TCCRAC 1 cut(s) 632
MnlI CCTC 7 cut(s) 150, 321, 442, 454, 787, 840, 888
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 5 cut(s) 110, 200, 309, 488, 734
MspA1I CMGCKG 1 cut(s) 621
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 2 cut(s) 302, 523
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 2 cut(s) 302, 523
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 3 cut(s) 470, 507, 720
NdeII GATC 4 cut(s) 82, 342, 646, 858
NlaIII CATG 5 cut(s) 106, 121, 328, 350, 675
NlaIV GGNNCC 1 cut(s) 870
PagI TCATGA 1 cut(s) 102
PctI GAATGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 367, 556, 917
PflMI CCANNNNNTGG 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 388
PkrI GCNGC 4 cut(s) 149, 472, 623, 667
PleI GAGTC 2 cut(s) 206, 699
PpsI GAGTC 2 cut(s) 206, 699
Ppu21I YACGTR 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 300, 521
PspGI CCWGG 2 cut(s) 300, 521
PspN4I GGNNCC 1 cut(s) 870
PspOMI GGGCCC 1 cut(s) 868
PspPI GGNCC 4 cut(s) 598, 868, 869, 933
PsrI GAACNNNNNNTAC 2 cut(s) 32, 64
PstNI CAGNNNCTG 1 cut(s) 470
RsaI GTAC 3 cut(s) 50, 455, 633
RsaNI GTAC 3 cut(s) 49, 454, 632
SaqAI TTAA 5 cut(s) 110, 200, 309, 488, 734
SatI GCNGC 4 cut(s) 148, 471, 622, 666
Sau3AI GATC 4 cut(s) 82, 342, 646, 858
Sau96I GGNCC 4 cut(s) 598, 868, 869, 933
ScaI AGTACT 1 cut(s) 633
SchI GAGTC 2 cut(s) 206, 699
ScrFI CCNGG 2 cut(s) 302, 523
SduI GDGCHC 2 cut(s) 573, 872
SfaNI GCATC 2 cut(s) 677, 744
SfcI CTRYAG 1 cut(s) 192
SinI GGWCC 2 cut(s) 598, 933
SmlI CTYRAG 2 cut(s) 109, 496
SmoI CTYRAG 2 cut(s) 109, 496
SpeI ACTAGT 1 cut(s) 379
Sse9I AATT 5 cut(s) 258, 413, 428, 574, 683
SsiI CCGC 4 cut(s) 135, 419, 619, 757
SspI AATATT 1 cut(s) 222
SspMI CTAG 2 cut(s) 234, 380
StyD4I CCNGG 2 cut(s) 300, 521
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 2 cut(s) 97, 929
TasI AATT 5 cut(s) 258, 413, 428, 574, 683
TatI WGTACW 2 cut(s) 48, 631
TfiI GAWTC 3 cut(s) 367, 556, 917
Tru1I TTAA 5 cut(s) 110, 200, 309, 488, 734
Tru9I TTAA 5 cut(s) 110, 200, 309, 488, 734
TscAI CASTG 2 cut(s) 137, 410
TseI GCWGC 4 cut(s) 147, 470, 621, 665
TspDTI ATGAA 8 cut(s) 47, 53, 91, 440, 564, 569, 755, 783
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 2 cut(s) 137, 410
Van91I CCANNNNNTGG 1 cut(s) 183
Vha464I CTTAAG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 598, 933
XapI RAATTY 3 cut(s) 258, 413, 683
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 234, 380
ZrmI AGTACT 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.