Rw5G044820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001089
Physical Location & Seq
Forward (+)
78530689 .. 78531387
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044820.1

Sequence Viewer

Length: 699 bp
ATGGAAATTAACTTCAAAGCTCTGGAAGGCCCAGAAAGGTCACCCCTACTTCCAATTTCAAATAACCCTAATTCAAACCCTCATGTTCAGCAGTCAATGAAATCACACTACATTTCTAATGTTACCGTAGTCCAACTTATAATTCTAATGGTTACATTTGGGACAGTCTTGTCCTTGCCTTCTTTTTTCACCTCCATGTCTTTGGTTCCCCAAACTCCAAGTTTCCAACTTGACTCTCTTTTTCTATCTAACTTTAACATCTCAAACACAATATTCAGGGCTGACTGGGATATAACCCTTAAAATAGAGAACCCCAACTTGGTCTCGACGGTTCATGTCAACAACATAAAGGGCTCGATTTCGTACAACAACAACTTTCTTGCAATGTACTTAGTAGAACCATTTGAGTTGGGATACATGGAGCATAGACCGGTGCACATGAAGATATCAAAATATCAAACAATGACAATGAATAGATGGGTTTCAGAGGAGATCAATAGGCAACGAGATGAGAATGCAATTGTGAGTTTCAACCTGACAATGTTTGTTTCAGCTACATATACGACCGGTTGGTGGGGAGCCGAAAAGGTTGTATTGAACCCTCAGTGTTTGGATTTGAGGATTGCCTTCCTTCCTAAAACTGGGTTCGGAAGTTGGGTAAATGGAGGGCCAATGAAATGCTCACTTCCTATGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

232

Amino Acids

26.34

Weight (kDa)

6.96

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AasI GACNNNNNNGTC 1 cut(s) 169
AfaI GTAC 2 cut(s) 365, 389
AfiI CCNNNNNNNGG 3 cut(s) 319, 573, 641
AgeI ACCGGT 2 cut(s) 430, 566
AgsI TTSAA 5 cut(s) 16, 60, 75, 532, 598
AjuI GAANNNNNNNTTGG 4 cut(s) 126, 158, 302, 334
AluBI AGCT 2 cut(s) 20, 554
AluI AGCT 2 cut(s) 20, 554
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 434
AoxI GGCC 2 cut(s) 28, 668
ApaLI GTGCAC 1 cut(s) 434
AsiGI ACCGGT 2 cut(s) 430, 566
AspS9I GGNCC 2 cut(s) 29, 668
AsuHPI GGTGA 2 cut(s) 33, 181
BaeGI GKGCMC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 438
BccI CCATC 1 cut(s) 471
BciVI GTATCC 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 328
BfuI GTATCC 1 cut(s) 407
BmgT120I GGNCC 2 cut(s) 29, 668
BmiI GGNNCC 2 cut(s) 207, 580
BmrI ACTGGG 2 cut(s) 295, 651
BmuI ACTGGG 2 cut(s) 295, 651
BsaI GGTCTC 1 cut(s) 328
BsaWI WCCGGW 2 cut(s) 430, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 573, 641
Bse118I RCCGGY 2 cut(s) 430, 566
Bse1I ACTGG 2 cut(s) 290, 646
Bse3DI GCAATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 319, 573, 641
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 2 cut(s) 290, 646
BseRI GAGGAG 1 cut(s) 503
BseSI GKGCMC 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 2 cut(s) 30, 670
BshTI ACCGGT 2 cut(s) 430, 566
BsiEI CGRYCG 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 431, 567
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 3 cut(s) 319, 573, 641
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 2 cut(s) 30, 670
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 356, 438
Bsp143I GATC 1 cut(s) 492
BspANI GGCC 2 cut(s) 30, 670
BspCNI CTCAG 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 207, 580
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 2 cut(s) 430, 566
BsrI ACTGG 2 cut(s) 290, 646
BssAI RCCGGY 2 cut(s) 430, 566
BssMI GATC 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 127, 166, 331
BstDEI CTNAG 2 cut(s) 391, 603
BstEII GGTNACC 1 cut(s) 39
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 492
BstMCI CGRYCG 1 cut(s) 567
BstPI GGTNACC 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 438
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 30, 670
BtsIMutI CAGTG 1 cut(s) 611
Cfr10I RCCGGY 2 cut(s) 430, 566
Cfr13I GGNCC 2 cut(s) 29, 668
Csp6I GTAC 2 cut(s) 364, 388
CspAI ACCGGT 2 cut(s) 430, 566
CviAII CATG 5 cut(s) 83, 196, 335, 418, 439
CviJI RGCY 7 cut(s) 20, 30, 281, 354, 554, 581, 670
CviKI_1 RGCY 7 cut(s) 20, 30, 281, 354, 554, 581, 670
CviQI GTAC 2 cut(s) 364, 388
DdeI CTNAG 2 cut(s) 391, 603
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 39
EcoO65I GGTNACC 1 cut(s) 39
EcoRV GATATC 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 5 cut(s) 86, 199, 338, 421, 442
FaqI GGGAC 1 cut(s) 175
FatI CATG 5 cut(s) 82, 195, 334, 417, 438
FriOI GRGCYC 1 cut(s) 356
HaeIII GGCC 2 cut(s) 30, 670
HapII CCGG 2 cut(s) 431, 567
Hin1II CATG 5 cut(s) 86, 199, 338, 421, 442
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 1 cut(s) 233
HpaII CCGG 2 cut(s) 431, 567
HphI GGTGA 2 cut(s) 33, 181
Hpy166II GTNNAC 2 cut(s) 340, 436
Hpy188I TCNGA 2 cut(s) 487, 650
Hpy188III TCNNGA 3 cut(s) 23, 325, 696
Hpy8I GTNNAC 2 cut(s) 340, 436
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 4 cut(s) 20, 189, 637, 641
HpyCH4III ACNGT 3 cut(s) 127, 166, 331
HpyCH4V TGCA 3 cut(s) 383, 436, 518
HpyF3I CTNAG 2 cut(s) 391, 603
Hsp92II CATG 5 cut(s) 86, 199, 338, 421, 442
Kzo9I GATC 1 cut(s) 492
LmnI GCTCC 2 cut(s) 421, 578
LpnPI CCDG 8 cut(s) 8, 45, 262, 271, 444, 548, 580, 627
MaeIII GTNAC 3 cut(s) 39, 121, 151
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 1 cut(s) 454
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 2 cut(s) 356, 438
MluCI AATT 5 cut(s) 6, 54, 70, 141, 519
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 157, 250
MnlI CCTC 6 cut(s) 90, 202, 481, 612, 612, 659
MseI TTAA 3 cut(s) 9, 255, 300
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 2 cut(s) 431, 567
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 520
NdeII GATC 1 cut(s) 492
NlaIII CATG 5 cut(s) 86, 199, 338, 421, 442
NlaIV GGNNCC 2 cut(s) 207, 580
NmuCI GTSAC 1 cut(s) 39
PctI GAATGC 1 cut(s) 520
PinAI ACCGGT 2 cut(s) 430, 566
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PsiI TTATAA 1 cut(s) 140
PspEI GGTNACC 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 207, 580
PspPI GGNCC 2 cut(s) 29, 668
RsaI GTAC 2 cut(s) 365, 389
RsaNI GTAC 2 cut(s) 364, 388
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 9, 255, 300
Sau3AI GATC 1 cut(s) 492
Sau96I GGNCC 2 cut(s) 29, 668
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 2 cut(s) 356, 438
SetI ASST 6 cut(s) 22, 41, 194, 537, 556, 591
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 5 cut(s) 6, 54, 70, 141, 519
SspI AATATT 1 cut(s) 273
TaaI ACNGT 3 cut(s) 127, 166, 331
TaqI TCGA 2 cut(s) 326, 356
TasI AATT 5 cut(s) 6, 54, 70, 141, 519
TatI WGTACW 1 cut(s) 387
Tru1I TTAA 3 cut(s) 9, 255, 300
Tru9I TTAA 3 cut(s) 9, 255, 300
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 5 cut(s) 113, 323, 455, 485, 689
TspRI CASTG 1 cut(s) 611
VneI GTGCAC 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.