Rh5DG029800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001089
Physical Location & Seq
Reverse (-)
2155660 .. 2156358
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG029800.1

Sequence Viewer

Length: 699 bp
ATGGAAATTAACCGCAAAGTTTCGGAAGACCCAGAAAGCTCACCCCTACTTCCAATTTCAAATAACCCTAATTCAAACCCTTATGTTCAGCAGCCAATAGGATCACATTACATTTCTAAAGTTACCATCGCCCAACTCATAATTCTAATGGTTACATTTGGGACAGTCTTGTCCTTGCCTTGTTTTTTCACCTCCATGTCCTTGGTTCCCCAAACTCCAAATTTCCAACTCGACTCTCTTTTTCTTTCTAACTTTAACATCTCAAACACAACATTCGGGGCTGACTGGGATGTAACCCTCAAAATAGAGAACTCCAATTTGGTCTCAATAGTTCACTTCAACAACATAAAGGGTTTGATTTCGTACAACAACTACTTTCTTGCAATGTACTCGGTAGAACCATTTGATTTGGGATACAAGGAGCATAGACCGGTGCACATGAAGATATCAAAATATCGAACAATGACAATGAATAGATGGGTTTCAGACGAGATTAATAGGCAACGAGATGAGAATGCAGTTGTGAATTTCAACCTGACAATGTTTGTTTCAGCTACATATATGACAGGTTGGTTGGGAGTCGAAAAGGTTGTATTGAACCCTCAGTGTTTGGATTTGAGGGTTGCCTTCCTTTCTAAAACTGGGTTCGGAAGTTGGGTAAATGGAGGGCCAATGACATGCTCACTTCCTATGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

232

Amino Acids

26.24

Weight (kDa)

6.41

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 169
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 2 cut(s) 220, 526
AfaI GTAC 2 cut(s) 365, 389
AgeI ACCGGT 1 cut(s) 430
AgsI TTSAA 5 cut(s) 60, 75, 340, 532, 598
AjuI GAANNNNNNNTTGG 4 cut(s) 126, 158, 302, 334
AluBI AGCT 2 cut(s) 39, 554
AluI AGCT 2 cut(s) 39, 554
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 1 cut(s) 109
AoxI GGCC 1 cut(s) 668
ApaLI GTGCAC 1 cut(s) 434
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 2 cut(s) 220, 526
AseI ATTAAT 1 cut(s) 495
AsiGI ACCGGT 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 2 cut(s) 33, 181
BaeGI GKGCMC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 134, 471
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BciVI GTATCC 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 328
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 668
BmiI GGNNCC 1 cut(s) 207
BmrI ACTGGG 2 cut(s) 295, 651
BmuI ACTGGG 2 cut(s) 295, 651
BpiI GAAGAC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 430
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 290, 646
Bse3DI GCAATG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 2 cut(s) 290, 646
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 670
BshTI ACCGGT 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 1 cut(s) 670
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 670
BspCNI CTCAG 1 cut(s) 616
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 2 cut(s) 290, 646
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 101
BstNSI RCATGY 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 1 cut(s) 670
BtgZI GCGATG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 668
Csp6I GTAC 2 cut(s) 364, 388
CspAI ACCGGT 1 cut(s) 430
CviAII CATG 3 cut(s) 196, 439, 678
CviJI RGCY 5 cut(s) 39, 94, 281, 554, 670
CviKI_1 RGCY 5 cut(s) 39, 94, 281, 554, 670
CviQI GTAC 2 cut(s) 364, 388
DdeI CTNAG 1 cut(s) 603
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 447
EcoRV GATATC 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 3 cut(s) 199, 442, 681
FaqI GGGAC 1 cut(s) 175
FatI CATG 3 cut(s) 195, 438, 677
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
HaeIII GGCC 1 cut(s) 670
HapII CCGG 1 cut(s) 431
Hin1II CATG 3 cut(s) 199, 442, 681
HinfI GANTC 2 cut(s) 233, 579
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 33, 181
Hpy166II GTNNAC 2 cut(s) 334, 436
Hpy188I TCNGA 3 cut(s) 25, 487, 650
Hpy188III TCNNGA 1 cut(s) 696
Hpy8I GTNNAC 2 cut(s) 334, 436
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 3 cut(s) 383, 436, 518
HpyF3I CTNAG 1 cut(s) 603
Hsp92II CATG 3 cut(s) 199, 442, 681
Kzo9I GATC 1 cut(s) 101
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 6 cut(s) 45, 271, 444, 548, 552, 627
Lsp1109I GCAGC 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 121, 151, 292
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 2 cut(s) 38, 454
MhlI GDGCHC 1 cut(s) 438
MluCI AATT 7 cut(s) 6, 54, 70, 141, 220, 316, 526
MlyI GAGTC 2 cut(s) 227, 588
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 5 cut(s) 202, 308, 612, 612, 659
MseI TTAA 3 cut(s) 9, 255, 495
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 431
Mva1269I GAATGC 1 cut(s) 520
NdeII GATC 1 cut(s) 101
NlaIII CATG 3 cut(s) 199, 442, 681
NlaIV GGNNCC 1 cut(s) 207
NspI RCATGY 1 cut(s) 681
PctI GAATGC 1 cut(s) 520
PinAI ACCGGT 1 cut(s) 430
PkrI GCNGC 1 cut(s) 93
PleI GAGTC 2 cut(s) 227, 587
PpsI GAGTC 2 cut(s) 227, 587
PshBI ATTAAT 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 668
RsaI GTAC 2 cut(s) 365, 389
RsaNI GTAC 2 cut(s) 364, 388
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 9, 255, 495
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 2 cut(s) 227, 588
SduI GDGCHC 1 cut(s) 438
SetI ASST 6 cut(s) 41, 194, 537, 556, 571, 591
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 7 cut(s) 6, 54, 70, 141, 220, 316, 526
SsiI CCGC 1 cut(s) 13
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 3 cut(s) 231, 457, 582
TasI AATT 7 cut(s) 6, 54, 70, 141, 220, 316, 526
TatI WGTACW 1 cut(s) 387
Tru1I TTAA 3 cut(s) 9, 255, 495
Tru9I TTAA 3 cut(s) 9, 255, 495
TscAI CASTG 1 cut(s) 611
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 455, 485
TspRI CASTG 1 cut(s) 611
VneI GTGCAC 1 cut(s) 434
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 2 cut(s) 220, 526
XceI RCATGY 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.