Rw3G018290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001089
Physical Location & Seq
Reverse (-)
20302834 .. 20303562
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018290.1

Sequence Viewer

Length: 729 bp
ATGGAAATGGATGCAAAAGGTCAGCTATCAATTACCATGCCGCTTCTTCCAGTTTCGAATAACTCTTCAAAGCCTTACATTTCGCGTTCTTTTGGATCACATTACATTCCCGATTTCACCCTTAGCCAGCTCATGATTTTGTTAATCACATTAGGAACCATTTTGTCCTTGCCATGCATATTCATGTCTATGTCCCAATTTCCGCAAACCCCAAACATCCAGCTCCACTCGCTCTTCATTTCCAAACTCAACATCTCCAACACAACGTTAGGGGCTAATTGGGACTTGACCCTTAAAATAGAGAATCCCAACTTAGTCTCGTGGATTCGCTTCAACGACATAAAAGGCTCAATTTTGTACAAGAATAACCATCTCGTAATGTACTCCGTGGAGCCGTTTGTATTGGGAGTGAAGGAAAACAGAATTATGCAAATGAAAATGTCAAACCATAAGCTGGAAATGAACAAATGGGTTTTGGAAGAAATTGGTAAGCAATACCAAGATGGCGGAGCTGTCCAGTTTAGCCTGCAAATGTCTTTTTGGGGAATGTATAGAAATGGGTGGAGGGGAAAACAGAATTTTATAATGAATCCTCGATGTTCGGATTTGAAGGTTGGCTTCTTGCCTCAAACAGGGTTCGGAACCTGGTTAAGGAAAGGAGAACATATGATGTGCTCTGTTAATCCAAATGAAGACAAAGTGGATGGCTGTGAGCCTGTGATAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

242

Amino Acids

27.71

Weight (kDa)

9.02

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 454
AccII CGCG 1 cut(s) 85
AciI CCGC 3 cut(s) 41, 203, 507
AclI AACGTT 1 cut(s) 266
AclWI GGATC 1 cut(s) 103
AcsI RAATTY 1 cut(s) 577
AfaI GTAC 2 cut(s) 359, 383
AfiI CCNNNNNNNGG 3 cut(s) 454, 632, 651
AgsI TTSAA 3 cut(s) 69, 334, 610
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 5 cut(s) 25, 130, 223, 454, 512
AluI AGCT 5 cut(s) 25, 130, 223, 454, 512
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 577
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 56
BauI CACGAG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 677
BccI CCATC 3 cut(s) 378, 497, 698
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 322
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 646
BmiI GGNNCC 3 cut(s) 157, 393, 643
BmrFI CCNGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 699
Bpu10I CCTNAGC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 632, 651
Bse1I ACTGG 2 cut(s) 50, 517
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 3 cut(s) 16, 216, 709
BseLI CCNNNNNNNGG 3 cut(s) 454, 632, 651
BseNI ACTGG 2 cut(s) 50, 517
Bsh1236I CGCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 677
BslFI GGGAC 2 cut(s) 178, 296
BslI CCNNNNNNNGG 3 cut(s) 454, 632, 651
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 2 cut(s) 178, 296
Bsp119I TTCGAA 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 677
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 3 cut(s) 41, 203, 507
BspFNI CGCG 1 cut(s) 85
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 157, 393, 643
BspPI GGATC 1 cut(s) 103
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 2 cut(s) 50, 517
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 646
Bst6I CTCTTC 2 cut(s) 70, 239
BstAUI TGTACA 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 128, 527
BstDEI CTNAG 2 cut(s) 122, 313
BstDSI CCRYGG 1 cut(s) 387
BstENI CCTNNNNNAGG 2 cut(s) 630, 649
BstF5I GGATG 3 cut(s) 16, 216, 709
BstFNI CGCG 1 cut(s) 85
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 95
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 646
BstSCI CCNGG 1 cut(s) 644
BstUI CGCG 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 699
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 3 cut(s) 16, 216, 709
Cac8I GCNNGC 2 cut(s) 128, 527
CciI TCATGA 1 cut(s) 132
CsiI ACCWGGT 1 cut(s) 644
Csp6I GTAC 2 cut(s) 358, 382
CviAII CATG 4 cut(s) 37, 133, 174, 184
CviQI GTAC 2 cut(s) 358, 382
DdeI CTNAG 2 cut(s) 122, 313
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 70, 239
EarI CTCTTC 2 cut(s) 70, 239
EciI GGCGGA 1 cut(s) 522
EcoNI CCTNNNNNAGG 2 cut(s) 630, 649
EcoRII CCWGG 1 cut(s) 644
EcoT22I ATGCAT 1 cut(s) 179
FaeI CATG 4 cut(s) 40, 136, 177, 187
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 2 cut(s) 178, 296
FatI CATG 4 cut(s) 36, 132, 173, 183
FauNDI CATATG 1 cut(s) 666
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 3 cut(s) 23, 203, 716
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
Hin1II CATG 4 cut(s) 40, 136, 177, 187
HinfI GANTC 3 cut(s) 304, 325, 589
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 604, 641
Hpy188III TCNNGA 2 cut(s) 110, 133
HpyAV CCTTC 2 cut(s) 406, 604
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 14, 177, 430, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 122, 313
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 4 cut(s) 40, 136, 177, 187
Kzo9I GATC 1 cut(s) 95
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 3 cut(s) 228, 391, 509
LpnPI CCDG 9 cut(s) 63, 140, 233, 440, 530, 539, 618, 631, 658
MabI ACCWGGT 1 cut(s) 644
MaeII ACGT 1 cut(s) 266
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 5 cut(s) 38, 57, 226, 491, 704
MhlI GDGCHC 1 cut(s) 677
MluCI AATT 7 cut(s) 30, 197, 277, 351, 423, 483, 577
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 3 cut(s) 558, 603, 636
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 4 cut(s) 143, 294, 650, 681
MslI CAYNNNNRTG 2 cut(s) 182, 188
MspR9I CCNGG 1 cut(s) 646
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeI CATATG 1 cut(s) 666
NdeII GATC 1 cut(s) 95
NlaIII CATG 4 cut(s) 40, 136, 177, 187
NlaIV GGNNCC 3 cut(s) 157, 393, 643
NsiI ATGCAT 1 cut(s) 179
NspV TTCGAA 1 cut(s) 56
PagI TCATGA 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 239
PfeI GAWTC 3 cut(s) 304, 325, 589
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 1 cut(s) 42
PsiI TTATAA 1 cut(s) 584
Psp1406I AACGTT 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 3 cut(s) 157, 393, 643
RsaI GTAC 2 cut(s) 359, 383
RsaNI GTAC 2 cut(s) 358, 382
RseI CAYNNNNRTG 2 cut(s) 182, 188
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 4 cut(s) 143, 294, 650, 681
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 646
SduI GDGCHC 1 cut(s) 677
SexAI ACCWGGT 1 cut(s) 644
SfuI TTCGAA 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 182, 188
Sse9I AATT 7 cut(s) 30, 197, 277, 351, 423, 483, 577
SsiI CCGC 3 cut(s) 41, 203, 507
StyD4I CCNGG 1 cut(s) 644
TaiI ACGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 56, 595
TasI AATT 7 cut(s) 30, 197, 277, 351, 423, 483, 577
TatI WGTACW 2 cut(s) 357, 381
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 304, 325, 589
Tru1I TTAA 4 cut(s) 143, 294, 650, 681
Tru9I TTAA 4 cut(s) 143, 294, 650, 681
TspDTI ATGAA 6 cut(s) 172, 226, 449, 476, 602, 705
TspGWI ACGGA 1 cut(s) 376
Van91I CCANNNNNTGG 1 cut(s) 454
XagI CCTNNNNNAGG 2 cut(s) 630, 649
XapI RAATTY 1 cut(s) 577
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.