Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001089

Physical Location & Seq

Genomic Coordinates Reverse (-)

3459864 .. 3460574

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1037900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGGATTAGTAAAACAGCGCAGCGCTCAGTCACCATTCCGCTGCTGCCAGTTTCACACAGCCCTTCGAGTTCAAACCCCTACATATCGCAGCCTATTACATCGAGATGGGCATCAAAATTGGTACTTGTTCACCGTGTTTTGTTATTCGCATTAGGGATAGTCACCTTGATATGCGTCGTCATGGCCACATCCCTCGTTCCACAACCCCCAAAAATCAGACTCAACTCGCTCTTCATGTCCAAACTTAACATCTCAAGAGGAAGGCTAGGTGCCAACTTTGACGTAACCTTCACAATAGAGAACCCTAATCTGGTTTCATGGGTGCGCTTTAATCGCTTAGATGGTTCAATTTCGTACAAAGATAACGTCATCCTGACATACTCGTTGGAGCCATTTGTGTTGGGATTGAAGCAGCAAAGAACGATGCGCGTAAAGATATCGACAACGGGGTTAGAAGATGATGATCAACCAGTTGTGGAGGAATGGGTGTTGGACGAGGTCAAAAGGCAACGTGAAGATGGGGCTGTGGAATTAAGCATGGAAATGTTTGCTTGGGCTACGTACAAGACTGGTTGGTGGGGAACACAATTTGTTATAATGAACCCTCAATGTTTGGATTTGAGGGTTGGTTTCTTGCCTAAAGTAGGGTTCGGAAGCTGGATTAGTGGAGGGCCTATGATGTGCTCGGTTCCCGTGCTAATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

237

Amino Acids

26.43

Weight (kDa)

9.05

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52460
fragaria_vesca	FvH4_3g40821 FvH4_5g22901 FvH4_6g24970
malus_domestica	MD07G1151300.v1.1 MD12G1039100.v1.1 MD12G1087900.v1.1 MD14G1037800.v1.1 MD14G1037900.v1.1
prunus_persica	Prupe.7G048100_v2.0.a1 Prupe.7G096300_v2.0.a1 Prupe.7G096500_v2.0.a1 Prupe.7G096700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124701 RchiOBHm_Chr3g0475771 RchiOBHm_Chr5g0073621 RchiOBHm_Chr7g0211331 RchiOBHm_Chr7g0211341
rosa_laevigata	RLG00000003008 RLG00000003009 RLG00000018813 RLG00000023818 RLG00000036394
rosa_multiflora	Rmu_sc0000539.1_g000081 Rmu_sc0001226.1_g000003 Rmu_ssc0000242.1_g000009 Rmu_ssc0000242.1_g000017
rosa_roxburghii	Rroxscaffold_2G00119740 Rroxscaffold_3G00247920
rosa_rugosa	Rorug02G0251900 Rorug04G0403500.1 Rorug05G0424700 Rorug05G0425600 Rorug05G0425600 Rorug07G0125100 Rorug07G0125200 Rorug07G0170100
rosa_samantha	Rh2AG310900 Rh2CG298300 Rh2DG334900 Rh3AG201100 Rh3CG226100 Rh3DG226700 Rh5CG526300 Rh5CG526600 Rh5DG029800 Rh5DG515500 Rh5DG515600 Rh7AG257500 Rh7AG257600 Rh7BG251600 Rh7BG251700 Rh7DG264200 Rh7DG264300 Rh7DG309500
rosa_wichuraiana	Rw2G025150 Rw3G018290 Rw5G044820 Rw7G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	432
AciI	CCGC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	3 cut(s)	126, 359, 566
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	313, 647
AgsI	TTSAA	3 cut(s)	75, 351, 412
AluBI	AGCT	1 cut(s)	660
AluI	AGCT	1 cut(s)	660
Alw21I	GWGCWC	1 cut(s)	689
Aor51HI	AGCGCT	1 cut(s)	26
AoxI	GGCC	2 cut(s)	186, 674
ApeKI	GCWGC	5 cut(s)	22, 43, 46, 91, 415
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AspLEI	GCGC	4 cut(s)	22, 27, 330, 432
AspS9I	GGNCC	1 cut(s)	674
AsuHPI	GGTGA	3 cut(s)	25, 125, 157
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	5 cut(s)	30, 33, 34, 103, 427
BccI	CCATC	3 cut(s)	102, 338, 515
BclI	TGATCA	1 cut(s)	466
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	28
BisI	GCNGC	5 cut(s)	23, 44, 47, 92, 416
BlsI	GCNGC	5 cut(s)	24, 45, 48, 93, 417
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	3 cut(s)	274, 393, 693
BmsI	GCATC	2 cut(s)	122, 417
BpuEI	CTTGAG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	564
BsaBI	GATNNNNATC	2 cut(s)	112, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 647
Bse1I	ACTGG	3 cut(s)	50, 473, 577
Bse8I	GATNNNNATC	2 cut(s)	112, 465
BseGI	GGATG	2 cut(s)	191, 372
BseJI	GATNNNNATC	2 cut(s)	112, 465
BseLI	CCNNNNNNNGG	2 cut(s)	313, 647
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	3 cut(s)	50, 473, 577
BseXI	GCAGC	5 cut(s)	30, 33, 34, 103, 427
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	188, 676
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	689
BslI	CCNNNNNNNGG	2 cut(s)	313, 647
BsnI	GGCC	2 cut(s)	188, 676
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	188, 676
BspCNI	CTCAG	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	3 cut(s)	274, 393, 693
BspQI	GCTCTTC	1 cut(s)	239
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	50, 473, 577
BssMI	GATC	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	564
BstDEI	CTNAG	2 cut(s)	28, 340
BstENI	CCTNNNNNAGG	1 cut(s)	645
BstF5I	GGATG	2 cut(s)	191, 372
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	4 cut(s)	22, 27, 330, 432
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstSNI	TACGTA	1 cut(s)	564
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	5 cut(s)	30, 33, 34, 103, 427
BsuRI	GGCC	2 cut(s)	188, 676
BtsCI	GGATG	2 cut(s)	191, 372
CfoI	GCGC	4 cut(s)	22, 27, 330, 432
Cfr13I	GGNCC	1 cut(s)	674
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	125, 358, 565
CviAII	CATG	4 cut(s)	184, 238, 321, 541
CviJI	RGCY	9 cut(s)	63, 94, 188, 268, 394, 527, 560, 660, 676
CviKI_1	RGCY	9 cut(s)	63, 94, 188, 268, 394, 527, 560, 660, 676
CviQI	GTAC	3 cut(s)	125, 358, 565
DdeI	CTNAG	2 cut(s)	28, 340
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco105I	TACGTA	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	441
Eco47III	AGCGCT	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	645
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRV	GATATC	1 cut(s)	441
FaeI	CATG	4 cut(s)	187, 241, 324, 544
FaiI	YATR	9 cut(s)	86, 175, 185, 239, 322, 382, 542, 599, 680
FatI	CATG	4 cut(s)	183, 237, 320, 540
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	23, 44, 47, 92, 416
FokI	GGATG	2 cut(s)	178, 359
Fsp4HI	GCNGC	5 cut(s)	23, 44, 47, 92, 416
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	4 cut(s)	21, 26, 329, 431
GluI	GCNGC	5 cut(s)	23, 44, 47, 92, 416
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	2 cut(s)	188, 676
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	4 cut(s)	22, 27, 330, 432
Hin1II	CATG	4 cut(s)	187, 241, 324, 544
Hin6I	GCGC	4 cut(s)	20, 25, 328, 430
HinP1I	GCGC	4 cut(s)	20, 25, 328, 430
HinfI	GANTC	1 cut(s)	222
HphI	GGTGA	3 cut(s)	25, 125, 157
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	221, 656
Hpy188III	TCNNGA	3 cut(s)	105, 258, 376
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	3 cut(s)	75, 258, 301
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	4 cut(s)	285, 369, 514, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	28, 340
HpySE526I	ACGT	4 cut(s)	285, 369, 514, 563
Hsp92II	CATG	4 cut(s)	187, 241, 324, 544
HspAI	GCGC	4 cut(s)	20, 25, 328, 430
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	6 cut(s)	63, 299, 389, 486, 558, 646
Lsp1109I	GCAGC	5 cut(s)	30, 33, 34, 103, 427
LweI	GCATC	2 cut(s)	122, 417
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	4 cut(s)	285, 369, 514, 563
MaeIII	GTNAC	3 cut(s)	31, 163, 286
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	3 cut(s)	226, 470, 530
MhlI	GDGCHC	1 cut(s)	689
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	5 cut(s)	119, 351, 533, 590, 702
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	2 cut(s)	369, 474
MnlI	CCTC	7 cut(s)	206, 254, 475, 493, 618, 618, 665
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	3 cut(s)	249, 333, 536
MslI	CAYNNNNRTG	2 cut(s)	106, 545
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	43
MteI	GCGCNGCGC	1 cut(s)	23
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	187, 241, 324, 544
NlaIV	GGNNCC	3 cut(s)	274, 393, 693
NmuCI	GTSAC	2 cut(s)	31, 163
PciSI	GCTCTTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	24, 45, 48, 93, 417
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	564
PsiI	TTATAA	1 cut(s)	599
PspN4I	GGNNCC	3 cut(s)	274, 393, 693
PspPI	GGNCC	1 cut(s)	674
PsyI	GACNNNGTC	1 cut(s)	500
RsaI	GTAC	3 cut(s)	126, 359, 566
RsaNI	GTAC	3 cut(s)	125, 358, 565
RseI	CAYNNNNRTG	2 cut(s)	106, 545
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	249, 333, 536
SatI	GCNGC	5 cut(s)	23, 44, 47, 92, 416
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	674
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	689
SetI	ASST	9 cut(s)	170, 274, 288, 293, 372, 504, 517, 566, 662
SfaNI	GCATC	2 cut(s)	122, 417
SmiMI	CAYNNNNRTG	2 cut(s)	106, 545
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SnaBI	TACGTA	1 cut(s)	564
Sse9I	AATT	5 cut(s)	119, 351, 533, 590, 702
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	4 cut(s)	288, 372, 517, 566
TaqI	TCGA	3 cut(s)	68, 104, 443
TasI	AATT	5 cut(s)	119, 351, 533, 590, 702
Tru1I	TTAA	3 cut(s)	249, 333, 536
Tru9I	TTAA	3 cut(s)	249, 333, 536
TseFI	GTSAC	2 cut(s)	31, 163
TseI	GCWGC	5 cut(s)	22, 43, 46, 91, 415
Tsp45I	GTSAC	2 cut(s)	31, 163
TspDTI	ATGAA	3 cut(s)	226, 309, 617
Tth111I	GACNNNGTC	1 cut(s)	500
XagI	CCTNNNNNAGG	1 cut(s)	645
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.