RLG00000003008

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
43013280 .. 43013702
423 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003008

Sequence Viewer

Length: 423 bp
ATGTCCTTGGTTCCTCAGACTCTGAGTTTCCAACTCGACTCTCTTTTCCTTTCTAACTTTAACATCTCAAACACAACCATTGGGGCTGATTGGGATATGACCCTTCAAATAGAGAACCCCAACTTGGTCACAAAGATTCACTTCAACATCATAAATGGCTCGATTTCGTACAAAGACAACTCTCTTGCAATGTACTCGATAAAGCCATTTGGGTTGGGATACAGGGAGCACAGACTGGTGCACTTGAAGATATCAAAATATCAGACAATGGAAAAGAATGGATGGGTTTTGGATGAGATCAATATGCAACGAGATGAGAATGGATCTGTTAATTTCAGCCTCACAATGTTTGTTTCAGCTACATATACAACTGGTTGGTGGGGAATCAAAAAGTTTGTATCGAACCTCAATGTTTGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

16.14

Weight (kDa)

6.82

Isoelectric Point (pI)

17.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 331
AfaI GTAC 2 cut(s) 170, 194
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 3 cut(s) 107, 145, 247
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 1 cut(s) 359
AluI AGCT 1 cut(s) 359
Alw21I GWGCWC 2 cut(s) 231, 243
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 331
AlwNI CAGNNNCTG 1 cut(s) 22
ApaLI GTGCAC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 243
Bbv12I GWGCWC 2 cut(s) 231, 243
BccI CCATC 1 cut(s) 276
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciVI GTATCC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 240, 376
Bse3DI GCAATG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 287, 298
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 14, 29
BseNI ACTGG 2 cut(s) 240, 376
BseSI GKGCMC 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 231, 243
BslI CCNNNNNNNGG 1 cut(s) 124
Bsp1286I GDGCHC 2 cut(s) 231, 243
Bsp143I GATC 2 cut(s) 297, 323
BspCNI CTCAG 2 cut(s) 15, 28
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 240, 376
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 2 cut(s) 297, 323
BssT1I CCWWGG 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 15, 23
BstF5I GGATG 2 cut(s) 287, 298
BstKTI GATC 2 cut(s) 300, 326
BstMBI GATC 2 cut(s) 297, 323
BstSLI GKGCMC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuI GTATCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 287, 298
CaiI CAGNNNCTG 1 cut(s) 22
Csp6I GTAC 2 cut(s) 169, 193
CviJI RGCY 5 cut(s) 86, 159, 205, 339, 359
CviKI_1 RGCY 5 cut(s) 86, 159, 205, 339, 359
CviQI GTAC 2 cut(s) 169, 193
DdeI CTNAG 2 cut(s) 15, 23
DpnI GATC 2 cut(s) 299, 325
DpnII GATC 2 cut(s) 297, 323
Eco130I CCWWGG 1 cut(s) 6
Eco32I GATATC 1 cut(s) 252
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaiI YATR 5 cut(s) 98, 152, 305, 364, 366
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FokI GGATG 2 cut(s) 294, 305
HinfI GANTC 4 cut(s) 19, 38, 136, 384
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 18, 24, 264
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 188, 241, 307
HpyF3I CTNAG 2 cut(s) 15, 23
Kzo9I GATC 2 cut(s) 297, 323
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 3 cut(s) 208, 221, 357
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 299, 325
MboI GATC 2 cut(s) 297, 323
MboII GAAGA 1 cut(s) 259
MflI RGATCY 1 cut(s) 323
MhlI GDGCHC 2 cut(s) 231, 243
MluCI AATT 1 cut(s) 331
MlyI GAGTC 2 cut(s) 13, 32
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 3 cut(s) 24, 350, 416
MseI TTAA 2 cut(s) 60, 330
NdeII GATC 2 cut(s) 297, 323
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 2 cut(s) 136, 384
PleI GAGTC 2 cut(s) 13, 32
PpsI GAGTC 2 cut(s) 13, 32
PspN4I GGNNCC 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 22
PsuI RGATCY 1 cut(s) 323
RsaI GTAC 2 cut(s) 170, 194
RsaNI GTAC 2 cut(s) 169, 193
SaqAI TTAA 2 cut(s) 60, 330
Sau3AI GATC 2 cut(s) 297, 323
SchI GAGTC 2 cut(s) 13, 32
SduI GDGCHC 2 cut(s) 231, 243
SetI ASST 2 cut(s) 361, 408
Sse9I AATT 1 cut(s) 331
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 4 cut(s) 36, 161, 197, 401
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 2 cut(s) 136, 384
Tru1I TTAA 2 cut(s) 60, 330
Tru9I TTAA 2 cut(s) 60, 330
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
VneI GTGCAC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.