Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001089

Physical Location & Seq

Genomic Coordinates Reverse (-)

4227567 .. 4228277

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1039100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAATTAGTAAAACAGCGCAACGCTCAGTCACCGTTCCCCTGCTCCCGATTTCACACAACCCTTCGATTTCAAACTCCTACGTACCGCAGCCTATTACATCGAGATGGACATCGAAATTAGTACTTGTCCACCGTGTTTTGTTACTCGCATTAGGGATTGTCACCTTGATATGCGTCTTTATGGCCACATCCCACTTTCCACAACCCCCGAAAATTCGACTCAACTCTCTTTTCGTGTCCAAACTTAACATCTCAAGAGGAATGCTTGGTGCCAACTTTGACGTAACCTTCACAATAGAGAACCCTAATCTGGTTTCATGGGTGCGCTTCAACCGTTTAGATGGTTCAATTTTGTACAAAGATAGCACCATCCTAACATATTCGTTGGAACCATTTGTTCTGGGATTGAAGCAACAAAGAACCATGCACGTAAAGATATCGACGATGGGGTCACAAGATGTTGATCAACCGGCTGTGGAGGAGGGGGTGTTGGACGAGATGAAAAGGCAAGGGGAAGAAGGAGCTGTGGATTTAAGCTTGGAAATGTTTGCTTGGGCGACGTACAAGAGCGGTTGGTGTGGAACACAGTCTGTTACAATGAACCCTCAATGTTTGGATTTAAGGGTTGGCTTCTTGCCTAAAGTTGGGTTTGGAAGCTGGATTAGTGGAGGGCCTATCACGTGCTCAGTTCCCATGCTAATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

237

Amino Acids

26.14

Weight (kDa)

8.71

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52460
fragaria_vesca	FvH4_3g40821 FvH4_5g22901 FvH4_6g24970
malus_domestica	MD07G1151300.v1.1 MD12G1039100.v1.1 MD12G1087900.v1.1 MD14G1037800.v1.1 MD14G1037900.v1.1
prunus_persica	Prupe.7G048100_v2.0.a1 Prupe.7G096300_v2.0.a1 Prupe.7G096500_v2.0.a1 Prupe.7G096700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124701 RchiOBHm_Chr3g0475771 RchiOBHm_Chr5g0073621 RchiOBHm_Chr7g0211331 RchiOBHm_Chr7g0211341
rosa_laevigata	RLG00000003008 RLG00000003009 RLG00000018813 RLG00000023818 RLG00000036394
rosa_multiflora	Rmu_sc0000539.1_g000081 Rmu_sc0001226.1_g000003 Rmu_ssc0000242.1_g000009 Rmu_ssc0000242.1_g000017
rosa_roxburghii	Rroxscaffold_2G00119740 Rroxscaffold_3G00247920
rosa_rugosa	Rorug02G0251900 Rorug04G0403500.1 Rorug05G0424700 Rorug05G0425600 Rorug05G0425600 Rorug07G0125100 Rorug07G0125200 Rorug07G0170100
rosa_samantha	Rh2AG310900 Rh2CG298300 Rh2DG334900 Rh3AG201100 Rh3CG226100 Rh3DG226700 Rh5CG526300 Rh5CG526600 Rh5DG029800 Rh5DG515500 Rh5DG515600 Rh7AG257500 Rh7AG257600 Rh7BG251600 Rh7BG251700 Rh7DG264200 Rh7DG264300 Rh7DG309500
rosa_wichuraiana	Rw2G025150 Rw3G018290 Rw5G044820 Rw7G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	573
AciI	CCGC	2 cut(s)	89, 573
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	216
AcvI	CACGTG	1 cut(s)	684
AfaI	GTAC	4 cut(s)	87, 126, 359, 566
AfiI	CCNNNNNNNGG	2 cut(s)	313, 647
AgsI	TTSAA	4 cut(s)	75, 334, 351, 412
AluBI	AGCT	3 cut(s)	527, 540, 660
AluI	AGCT	3 cut(s)	527, 540, 660
Alw21I	GWGCWC	1 cut(s)	689
AoxI	GGCC	2 cut(s)	186, 674
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	216
AseI	ATTAAT	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	22, 330
AspS9I	GGNCC	1 cut(s)	674
AsuHPI	GGTGA	2 cut(s)	25, 157
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	272
BbrPI	CACGTG	1 cut(s)	684
Bbv12I	GWGCWC	1 cut(s)	689
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	4 cut(s)	102, 338, 380, 442
BclI	TGATCA	1 cut(s)	466
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmcAI	AGTACT	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	2 cut(s)	274, 393
BpuEI	CTTGAG	1 cut(s)	241
BsaAI	YACGTR	3 cut(s)	85, 433, 684
BsaBI	GATNNNNATC	2 cut(s)	112, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 647
Bse118I	RCCGGY	1 cut(s)	472
Bse8I	GATNNNNATC	2 cut(s)	112, 465
BseGI	GGATG	2 cut(s)	191, 372
BseJI	GATNNNNATC	2 cut(s)	112, 465
BseLI	CCNNNNNNNGG	2 cut(s)	313, 647
BseMII	CTCAG	2 cut(s)	42, 702
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	188, 676
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	313, 647
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	188, 676
Bsp1286I	GDGCHC	1 cut(s)	689
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	2 cut(s)	89, 573
BspANI	GGCC	2 cut(s)	188, 676
BspCNI	CTCAG	2 cut(s)	41, 701
BspLI	GGNNCC	2 cut(s)	274, 393
BspT107I	GGYRCC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	573
BsrFI	RCCGGY	1 cut(s)	472
BsrGI	TGTACA	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	472
BssMI	GATC	1 cut(s)	466
Bst4CI	ACNGT	4 cut(s)	37, 137, 338, 591
BstAUI	TGTACA	1 cut(s)	357
BstBAI	YACGTR	3 cut(s)	85, 433, 684
BstDEI	CTNAG	2 cut(s)	28, 688
BstF5I	GGATG	2 cut(s)	191, 372
BstHHI	GCGC	2 cut(s)	22, 330
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstSNI	TACGTA	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	188, 676
BtsCI	GGATG	2 cut(s)	191, 372
CfoI	GCGC	2 cut(s)	22, 330
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	1 cut(s)	674
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	4 cut(s)	86, 125, 358, 565
CviAII	CATG	3 cut(s)	321, 427, 697
CviJI	RGCY	8 cut(s)	94, 188, 476, 527, 540, 633, 660, 676
CviKI_1	RGCY	8 cut(s)	94, 188, 476, 527, 540, 633, 660, 676
CviQI	GTAC	4 cut(s)	86, 125, 358, 565
DdeI	CTNAG	2 cut(s)	28, 688
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	186
Eco105I	TACGTA	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	441
Eco72I	CACGTG	1 cut(s)	684
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRV	GATATC	1 cut(s)	441
FaeI	CATG	3 cut(s)	324, 430, 700
FaiI	YATR	6 cut(s)	175, 185, 322, 382, 428, 698
FatI	CATG	3 cut(s)	320, 426, 696
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	2 cut(s)	178, 359
Fsp4HI	GCNGC	1 cut(s)	92
GlaI	GCGC	2 cut(s)	21, 329
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	188, 676
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	22, 330
Hin1II	CATG	3 cut(s)	324, 430, 700
Hin6I	GCGC	2 cut(s)	20, 328
HinP1I	GCGC	2 cut(s)	20, 328
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	25, 157
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	3 cut(s)	49, 105, 258
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	2 cut(s)	448, 565
HpyAV	CCTTC	3 cut(s)	75, 301, 515
HpyCH4III	ACNGT	4 cut(s)	37, 137, 338, 591
HpyCH4IV	ACGT	5 cut(s)	84, 285, 432, 563, 683
HpyCH4V	TGCA	1 cut(s)	430
HpyF3I	CTNAG	2 cut(s)	28, 688
HpySE526I	ACGT	5 cut(s)	84, 285, 432, 563, 683
Hsp92II	CATG	3 cut(s)	324, 430, 700
HspAI	GCGC	2 cut(s)	20, 328
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	51, 524
LpnPI	CCDG	5 cut(s)	56, 299, 389, 486, 646
Lsp1109I	GCAGC	1 cut(s)	103
MaeII	ACGT	5 cut(s)	84, 285, 432, 563, 683
MaeIII	GTNAC	6 cut(s)	31, 144, 163, 286, 453, 595
MalI	GATC	1 cut(s)	468
MbiI	CCGCTC	1 cut(s)	573
MboI	GATC	1 cut(s)	466
MboII	GAAGA	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	689
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	6 cut(s)	6, 119, 216, 351, 702, 706
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	2 cut(s)	369, 474
MnlI	CCTC	5 cut(s)	254, 475, 478, 618, 665
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	4 cut(s)	249, 536, 623, 705
MslI	CAYNNNNRTG	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	1 cut(s)	473
Mva1269I	GAATGC	1 cut(s)	270
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	3 cut(s)	324, 430, 700
NlaIV	GGNNCC	2 cut(s)	274, 393
NmuCI	GTSAC	3 cut(s)	31, 163, 453
PctI	GAATGC	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	216
PmaCI	CACGTG	1 cut(s)	684
PmlI	CACGTG	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	216
Ppu21I	YACGTR	3 cut(s)	85, 433, 684
PshBI	ATTAAT	1 cut(s)	705
PspCI	CACGTG	1 cut(s)	684
PspN4I	GGNNCC	2 cut(s)	274, 393
PspPI	GGNCC	1 cut(s)	674
RsaI	GTAC	4 cut(s)	87, 126, 359, 566
RsaNI	GTAC	4 cut(s)	86, 125, 358, 565
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	4 cut(s)	249, 536, 623, 705
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	674
ScaI	AGTACT	1 cut(s)	126
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SnaBI	TACGTA	1 cut(s)	85
Sse9I	AATT	6 cut(s)	6, 119, 216, 351, 702, 706
SsiI	CCGC	2 cut(s)	89, 573
TaaI	ACNGT	4 cut(s)	37, 137, 338, 591
TaiI	ACGT	5 cut(s)	87, 288, 435, 566, 686
TaqI	TCGA	5 cut(s)	68, 104, 116, 220, 443
TasI	AATT	6 cut(s)	6, 119, 216, 351, 702, 706
TatI	WGTACW	2 cut(s)	124, 357
Tru1I	TTAA	4 cut(s)	249, 536, 623, 705
Tru9I	TTAA	4 cut(s)	249, 536, 623, 705
TseFI	GTSAC	3 cut(s)	31, 163, 453
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	3 cut(s)	31, 163, 453
TspDTI	ATGAA	3 cut(s)	309, 518, 617
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.