FvH4_6g24970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001089
Physical Location & Seq
Reverse (-)
18911440 .. 18913114
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24970.t1

Sequence Viewer

Length: 789 bp
ATGCCTGCATGCATTATGGCTTTCTCTTCACCATCATCATCATCATCATCATCAAAGCATGCAATAGTTCCATTGCTTCCCGTTTCTTACCAGCCCAATTCCATAAAATCCCAGCTGAACAATAGCACTACTACTTCTAGGTCACCAACAAACGGGTCATGTTGGACACCAACTGTTGCCTCATTCGTTCTTCTCGTTTCCCTGCCTCTTCTATTCTTCGGCCTCATTGTAGGTTATCCAAGAATACATCAAGAGCTTTCTCTAGGCCCCCAAGCTCCCCACGTCCAGCTCACTGCCTTATCCGTCCACAAGTTTAATGTCTCTGAAACAAACCTGACAGCCGAATGGGATATCAAGTTCAGAATCCAGAACCCTAACCTCGTCTCGTACATCTCTTTCGACCGGGTTGAGGGTTTCGTTCTGTCGGAGGACACGGTGCCGCTGGCCATAAAGTCGGTGGAGTCGTTCTCGTTGCCCATGAGGACATCGAAAGAAGTGCATATGAGACTGGCGATGAACCAGTGGGATGGTGATCAGCCGGCACTGAAACAAGGGGTGTTGGAGAAGATGAAGAAGGATAGAGAAAGTGGGGGAGTAAGGTTCGGCGTGCAGATGGCGATTTGGGCGACGTATAGAAATGGTTGGTTGTGGACGAAGCAGCATATGATTATGAATCCTCAATGTTTGGATTTGCCGGTGGCGTTTGTGCCTGGCACCACGGCCATAGGTTTTGGAATTTTGATGGGTGCTGTGCCTAAGACGTGTTACGTTCCCATGCTAGCGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

263

Amino Acids

28.9

Weight (kDa)

8.9

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 436, 713
AciI CCGC 2 cut(s) 440, 782
AcoI YGGCCR 2 cut(s) 444, 720
AcsI RAATTY 1 cut(s) 735
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 152, 409
AflIII ACRYGT 1 cut(s) 761
AjiI CACGTC 2 cut(s) 283, 762
AjnI CCWGG 1 cut(s) 709
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
AluBI AGCT 4 cut(s) 115, 256, 275, 289
AluI AGCT 4 cut(s) 115, 256, 275, 289
Alw26I GTCTC 3 cut(s) 325, 388, 499
AoxI GGCC 4 cut(s) 220, 265, 444, 720
ApeKI GCWGC 1 cut(s) 658
ApoI RAATTY 1 cut(s) 735
AspS9I GGNCC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 3 cut(s) 21, 135, 542
AsuNHI GCTAGC 1 cut(s) 778
BalI TGGCCA 1 cut(s) 446
BanI GGYRCC 2 cut(s) 436, 713
BbvI GCAGC 1 cut(s) 670
BccI CCATC 4 cut(s) 40, 521, 607, 736
BceAI ACGGC 1 cut(s) 735
BcgI CGANNNNNNTGC 2 cut(s) 478, 512
BciT130I CCWGG 1 cut(s) 711
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 3 cut(s) 325, 388, 499
BfaI CTAG 3 cut(s) 138, 263, 779
BisI GCNGC 2 cut(s) 440, 659
BlsI GCNGC 2 cut(s) 441, 660
Bme1390I CCNGG 2 cut(s) 404, 711
BmgBI CACGTC 2 cut(s) 283, 762
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 3 cut(s) 268, 438, 715
BmrFI CCNGG 2 cut(s) 404, 711
BmtI GCTAGC 1 cut(s) 782
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpuMI CCSGG 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 717
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 409
Bse118I RCCGGY 2 cut(s) 538, 694
Bse1I ACTGG 2 cut(s) 513, 520
Bse3DI GCAATG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 152, 409
BseMI GCAATG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 513, 520
BseXI GCAGC 1 cut(s) 670
BseYI CCCAGC 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 629
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 4 cut(s) 222, 267, 446, 722
BshNI GGYRCC 2 cut(s) 436, 713
BsiEI CGRYCG 1 cut(s) 403
BsiSI CCGG 3 cut(s) 403, 539, 695
BslI CCNNNNNNNGG 2 cut(s) 152, 409
BsmAI GTCTC 3 cut(s) 325, 388, 499
BsmBI CGTCTC 1 cut(s) 388
BsnI GGCC 4 cut(s) 222, 267, 446, 722
Bsp143I GATC 1 cut(s) 532
BspACI CCGC 2 cut(s) 440, 782
BspANI GGCC 4 cut(s) 222, 267, 446, 722
BspLI GGNNCC 3 cut(s) 268, 438, 715
BspOI GCTAGC 1 cut(s) 782
BspT107I GGYRCC 2 cut(s) 436, 713
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 538, 694
BsrI ACTGG 2 cut(s) 513, 520
BssAI RCCGGY 2 cut(s) 538, 694
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 711
Bst4CI ACNGT 2 cut(s) 175, 436
Bst6I CTCTTC 2 cut(s) 31, 213
BstC8I GCNNGC 7 cut(s) 6, 10, 60, 444, 540, 608, 780
BstDEI CTNAG 1 cut(s) 756
BstDSI CCRYGG 1 cut(s) 717
BstEII GGTNACC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 3 cut(s) 325, 388, 499
BstMBI GATC 1 cut(s) 532
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 1 cut(s) 711
BstNSI RCATGY 2 cut(s) 12, 62
BstPI GGTNACC 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 402, 709
BstV1I GCAGC 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 527
BsuRI GGCC 4 cut(s) 222, 267, 446, 722
BtgI CCRYGG 1 cut(s) 717
BtgZI GCGATG 1 cut(s) 527
BtrI CACGTC 2 cut(s) 283, 762
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 3 cut(s) 291, 527, 542
Cac8I GCNNGC 7 cut(s) 6, 10, 60, 444, 540, 608, 780
Cfr10I RCCGGY 2 cut(s) 538, 694
Cfr13I GGNCC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 388
CviAII CATG 5 cut(s) 9, 59, 159, 478, 775
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 1 cut(s) 756
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
EaeI YGGCCR 2 cut(s) 444, 720
Eam1104I CTCTTC 2 cut(s) 31, 213
EarI CTCTTC 2 cut(s) 31, 213
Eco32I GATATC 1 cut(s) 352
Eco91I GGTNACC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 266
EcoO65I GGTNACC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 709
EcoRV GATATC 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 5 cut(s) 12, 62, 162, 481, 778
FatI CATG 5 cut(s) 8, 58, 158, 477, 774
FauNDI CATATG 2 cut(s) 501, 663
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 440, 659
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 2 cut(s) 440, 659
FspBI CTAG 3 cut(s) 138, 263, 779
GluI GCNGC 2 cut(s) 440, 659
GsaI CCCAGC 1 cut(s) 115
HaeIII GGCC 4 cut(s) 222, 267, 446, 722
HapII CCGG 3 cut(s) 403, 539, 695
Hin1II CATG 5 cut(s) 12, 62, 162, 481, 778
HinfI GANTC 3 cut(s) 363, 461, 673
HpaII CCGG 3 cut(s) 403, 539, 695
HphI GGTGA 3 cut(s) 21, 135, 542
Hpy166II GTNNAC 2 cut(s) 307, 651
Hpy188I TCNGA 3 cut(s) 325, 362, 427
Hpy188III TCNNGA 2 cut(s) 251, 367
Hpy8I GTNNAC 2 cut(s) 307, 651
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 1 cut(s) 568
HpyCH4III ACNGT 2 cut(s) 175, 436
HpyCH4IV ACGT 4 cut(s) 282, 629, 761, 768
HpyCH4V TGCA 5 cut(s) 8, 12, 62, 499, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 1 cut(s) 756
HpySE526I ACGT 4 cut(s) 282, 629, 761, 768
Hsp92II CATG 5 cut(s) 12, 62, 162, 481, 778
KroI GCCGGC 1 cut(s) 538
KroNI GCCGGC 1 cut(s) 540
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 670
MaeI CTAG 3 cut(s) 138, 263, 779
MaeII ACGT 4 cut(s) 282, 629, 761, 768
MaeIII GTNAC 2 cut(s) 141, 764
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 6 cut(s) 18, 182, 200, 208, 577, 583
MlsI TGGCCA 1 cut(s) 446
MluCI AATT 2 cut(s) 97, 735
MluNI TGGCCA 1 cut(s) 446
MlyI GAGTC 1 cut(s) 470
MmeI TCCRAC 3 cut(s) 143, 405, 540
MnlI CCTC 8 cut(s) 190, 216, 233, 389, 403, 421, 474, 687
Mox20I TGGCCA 1 cut(s) 446
Mph1103I ATGCAT 1 cut(s) 14
MroNI GCCGGC 1 cut(s) 538
MscI TGGCCA 1 cut(s) 446
MseI TTAA 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 446
MspA1I CMGCKG 2 cut(s) 115, 442
MspI CCGG 3 cut(s) 403, 539, 695
MspR9I CCNGG 2 cut(s) 404, 711
MvaI CCWGG 1 cut(s) 711
MwoI GCNNNNNNNGC 1 cut(s) 623
NaeI GCCGGC 1 cut(s) 540
NciI CCSGG 1 cut(s) 404
NdeI CATATG 2 cut(s) 501, 663
NdeII GATC 1 cut(s) 532
NgoMIV GCCGGC 1 cut(s) 538
NheI GCTAGC 1 cut(s) 778
NlaIII CATG 5 cut(s) 12, 62, 162, 481, 778
NlaIV GGNNCC 3 cut(s) 268, 438, 715
NmuCI GTSAC 1 cut(s) 141
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 2 cut(s) 12, 62
PaeI GCATGC 2 cut(s) 12, 62
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 461
PdiI GCCGGC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 363, 673
PkrI GCNGC 2 cut(s) 441, 660
PleI GAGTC 1 cut(s) 469
PpsI GAGTC 1 cut(s) 469
Psp6I CCWGG 1 cut(s) 709
PspEI GGTNACC 1 cut(s) 141
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 1 cut(s) 709
PspN4I GGNNCC 3 cut(s) 268, 438, 715
PspPI GGNCC 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 115
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 440, 659
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 470
ScrFI CCNGG 2 cut(s) 404, 711
SphI GCATGC 2 cut(s) 12, 62
Sse9I AATT 2 cut(s) 97, 735
SsiI CCGC 2 cut(s) 440, 782
SspMI CTAG 3 cut(s) 138, 263, 779
StyD4I CCNGG 2 cut(s) 402, 709
TaaI ACNGT 2 cut(s) 175, 436
TaiI ACGT 4 cut(s) 285, 632, 764, 771
TaqI TCGA 2 cut(s) 399, 488
TasI AATT 2 cut(s) 97, 735
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 2 cut(s) 363, 673
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 3 cut(s) 298, 527, 549
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 1 cut(s) 658
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 530, 584, 686
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 3 cut(s) 298, 527, 549
XapI RAATTY 1 cut(s) 735
XceI RCATGY 2 cut(s) 12, 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XspI CTAG 3 cut(s) 138, 263, 779
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.