RLG00000036394

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001089
Physical Location & Seq
Forward (+)
79958484 .. 79958978
495 bp
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UTR
Exon/CDS
Intron
RLM00000036394

Sequence Viewer

Length: 495 bp
ATGGTTTTAATTGGGATAGTCTTGCCCTTGCCTTCTCTTTTCACCTCCCTGTCCTTGGTTTTGCAAACTCCAAGTTTCCAACTCAACTCTCTTTTCCTTTCTAAATTTAACATCTCAAACAAAACCTTCAAGGCTGACTGGGATATGACCCTTAAAATAGAGAACCCCAACTTGGTCTCGACGATTCACTTCAATAGCATAAAGGGCTCGATTTCATGCAAAGGCAACTCTCTTGCAATATACTCGATAGAGCCATTTGAGTTGGGATACAAGGAGCATAGAGTGGTGCACATAAAGATATCAAAATATCAAACAATGGCAAAGAATGAATGGGCTTCAGACGAGATCAATAAGCAACGAGATGAGAATGGAGCTGCGAGTTTCAATCTGACAATGTTTGTTTCAGCTACATATATGACTGGCTGGTGGGAAATCGAAAAGGTTGTGTCGAACCCTCAGTACGTGTTTGGATTTGAGGGTTGTCTTCCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

6.82

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 50 - 114 7.1e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 55, 172
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 3 cut(s) 130, 193, 385
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 374, 407
AluI AGCT 2 cut(s) 374, 407
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 181
Alw44I GTGCAC 1 cut(s) 287
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 361
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciVI GTATCC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 493
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
BmrI ACTGGG 1 cut(s) 148
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 476
BsaAI YACGTR 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 172
Bse1I ACTGG 2 cut(s) 143, 424
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 55, 172
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 2 cut(s) 143, 424
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 55, 172
BsmAI GTCTC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 209, 291
Bsp143I GATC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 469
BspTNI GGTCTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 143, 424
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 456
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 476
BsuI GTATCC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 460
CviAII CATG 1 cut(s) 216
CviJI RGCY 7 cut(s) 134, 207, 253, 335, 374, 407, 423
CviKI_1 RGCY 7 cut(s) 134, 207, 253, 335, 374, 407, 423
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 1 cut(s) 456
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 321
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 219
FaiI YATR 9 cut(s) 146, 200, 217, 241, 279, 293, 412, 414, 416
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 1 cut(s) 375
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 493
GluI GCNGC 1 cut(s) 375
Hin1II CATG 1 cut(s) 219
HinfI GANTC 1 cut(s) 184
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 340, 390
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 1 cut(s) 184
HpyAV CCTTC 2 cut(s) 42, 136
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 64, 219, 236, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 345
LmnI GCTCC 2 cut(s) 274, 371
LpnPI CCDG 4 cut(s) 62, 124, 405, 409
Lsp1109I GCAGC 1 cut(s) 361
MaeI CTAG 1 cut(s) 493
MaeII ACGT 1 cut(s) 462
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 209, 291
MluCI AATT 2 cut(s) 9, 104
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 3 cut(s) 55, 465, 469
MseI TTAA 3 cut(s) 8, 108, 153
MwoI GCNNNNNNNGC 1 cut(s) 204
NdeII GATC 1 cut(s) 345
NlaIII CATG 1 cut(s) 219
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 463
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SaqAI TTAA 3 cut(s) 8, 108, 153
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 1 cut(s) 345
SduI GDGCHC 2 cut(s) 209, 291
SetI ASST 6 cut(s) 47, 128, 376, 409, 444, 465
Sse9I AATT 2 cut(s) 9, 104
SspMI CTAG 1 cut(s) 493
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 465
TaqI TCGA 5 cut(s) 179, 209, 245, 435, 449
TasI AATT 2 cut(s) 9, 104
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 3 cut(s) 8, 108, 153
Tru9I TTAA 3 cut(s) 8, 108, 153
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 204, 342
VneI GTGCAC 1 cut(s) 287
XapI RAATTY 1 cut(s) 104
XspI CTAG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.