RchiOBHm_Chr5g0073621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001089
Physical Location & Seq
Forward (+)
79685849 .. 79686547
699 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34850

Sequence Viewer

Length: 699 bp
ATGGAAATTAACTTCAAAGCTCCGGAAGGCCCAGAAAGCTCACCCCTACTTCCAATTTCAAATAACCCTAATTCAAACCCTCACGTTCAGCAGTCAATGAAATCACACTACATTTCTAATGTTACCGTAGTCCAACTCATAATTCTAATGGTTACATTTGGGACAGTCTTGTCCTTGCCTTCTTTTTTCACCTCCATGTCTTTGGTTCCCCAAACTCCAAGTTTCCAACTCGACTCTCTTTTTCTATCTAACTTTAACATCTCAAACACAATATTCAGGGTTGATTGGGATATAACCCTTAAAATAGAGAAACCCAACTTGGTCTCGACGGTTCATGTCAATAGCATAAAGGGCTCGATTTCGTACAACAACAACTTTCTTGCAATGTTCTTAGTAGAACCATTTGAGTTGGGATACATGGAGCATAGATCGGTGCACATGATGATATCAAAATATCGAACAATGACAATGAATAGATGGGTTTCAGACGAGATCAATAGGCAACGAGATGAGAATGCAATTGTGAGTTTCAACCTGACAATGTTTGTTTCAGCTACATATACGACCGGCTGCTGGGGAGCTGAAAAGGTTTTATTGAACCCTCAGTGTTTGGATTTGAGGATTGCCTTCCTTCCTAAAACTGGGTTCGGAATTTGGGTAAATGGAGGGCCAATGAAATGCTCACTTCCTATGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

232

Amino Acids

26.21

Weight (kDa)

6.96

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 169
AccIII TCCGGA 1 cut(s) 22
AcsI RAATTY 1 cut(s) 651
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 573, 641
AgsI TTSAA 5 cut(s) 16, 60, 75, 532, 598
AjuI GAANNNNNNNTTGG 4 cut(s) 126, 158, 302, 334
AluBI AGCT 4 cut(s) 20, 39, 554, 581
AluI AGCT 4 cut(s) 20, 39, 554, 581
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 1 cut(s) 328
Alw44I GTGCAC 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 22
AoxI GGCC 2 cut(s) 28, 668
ApaLI GTGCAC 1 cut(s) 434
ApeKI GCWGC 1 cut(s) 570
ApoI RAATTY 1 cut(s) 651
AspS9I GGNCC 2 cut(s) 29, 668
AsuHPI GGTGA 2 cut(s) 33, 181
BaeGI GKGCMC 1 cut(s) 438
BanII GRGCYC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 557
BccI CCATC 1 cut(s) 471
BciVI GTATCC 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 328
BfuI GTATCC 1 cut(s) 407
BisI GCNGC 1 cut(s) 571
BlsI GCNGC 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 29, 668
BmiI GGNNCC 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 651
BmuI ACTGGG 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 573, 641
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 1 cut(s) 646
Bse3DI GCAATG 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 573, 641
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 1 cut(s) 646
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 1 cut(s) 557
BseYI CCCAGC 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 2 cut(s) 30, 670
BsiEI CGRYCG 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 438
BsiSI CCGG 2 cut(s) 23, 567
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 573, 641
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 2 cut(s) 30, 670
Bso31I GGTCTC 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 356, 438
Bsp13I TCCGGA 1 cut(s) 22
Bsp143I GATC 2 cut(s) 428, 492
BspANI GGCC 2 cut(s) 30, 670
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 1 cut(s) 646
BssAI RCCGGY 1 cut(s) 566
BssMI GATC 2 cut(s) 428, 492
Bst4CI ACNGT 3 cut(s) 127, 166, 331
BstDEI CTNAG 2 cut(s) 391, 603
BstKTI GATC 2 cut(s) 431, 495
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 2 cut(s) 428, 492
BstMCI CGRYCG 1 cut(s) 567
BstMWI GCNNNNNNNGC 2 cut(s) 36, 351
BstSLI GKGCMC 1 cut(s) 438
BstV1I GCAGC 1 cut(s) 557
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 30, 670
BtsIMutI CAGTG 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 2 cut(s) 29, 668
Csp6I GTAC 1 cut(s) 364
CviAII CATG 4 cut(s) 196, 335, 418, 439
CviJI RGCY 8 cut(s) 20, 30, 39, 354, 554, 570, 581, 670
CviKI_1 RGCY 8 cut(s) 20, 30, 39, 354, 554, 570, 581, 670
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 391, 603
DpnI GATC 2 cut(s) 430, 494
DpnII GATC 2 cut(s) 428, 492
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 447
EcoRV GATATC 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 4 cut(s) 199, 338, 421, 442
FaqI GGGAC 1 cut(s) 175
FatI CATG 4 cut(s) 195, 334, 417, 438
Fnu4HI GCNGC 1 cut(s) 571
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 571
GluI GCNGC 1 cut(s) 571
GsaI CCCAGC 1 cut(s) 577
HaeIII GGCC 2 cut(s) 30, 670
HapII CCGG 2 cut(s) 23, 567
Hin1II CATG 4 cut(s) 199, 338, 421, 442
HinfI GANTC 1 cut(s) 233
HpaII CCGG 2 cut(s) 23, 567
HphI GGTGA 2 cut(s) 33, 181
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 2 cut(s) 487, 650
Hpy188III TCNNGA 3 cut(s) 23, 325, 696
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 1 cut(s) 331
HpyAV CCTTC 4 cut(s) 20, 189, 637, 641
HpyCH4III ACNGT 3 cut(s) 127, 166, 331
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 383, 436, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 351
HpyF3I CTNAG 2 cut(s) 391, 603
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 4 cut(s) 199, 338, 421, 442
Kpn2I TCCGGA 1 cut(s) 22
Kzo9I GATC 2 cut(s) 428, 492
LmnI GCTCC 3 cut(s) 25, 421, 578
LpnPI CCDG 7 cut(s) 36, 45, 262, 548, 559, 580, 627
Lsp1109I GCAGC 1 cut(s) 557
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 121, 151
MalI GATC 2 cut(s) 430, 494
MboI GATC 2 cut(s) 428, 492
MfeI CAATTG 1 cut(s) 519
MhlI GDGCHC 2 cut(s) 356, 438
MluCI AATT 6 cut(s) 6, 54, 70, 141, 519, 651
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 157, 250
MnlI CCTC 5 cut(s) 90, 202, 612, 612, 659
MroI TCCGGA 1 cut(s) 22
MseI TTAA 3 cut(s) 9, 255, 300
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 2 cut(s) 23, 567
MunI CAATTG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 520
MwoI GCNNNNNNNGC 2 cut(s) 36, 351
NdeII GATC 2 cut(s) 428, 492
NlaIII CATG 4 cut(s) 199, 338, 421, 442
NlaIV GGNNCC 1 cut(s) 207
PctI GAATGC 1 cut(s) 520
PkrI GCNGC 1 cut(s) 572
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 573
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 29, 668
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 9, 255, 300
SatI GCNGC 1 cut(s) 571
Sau3AI GATC 2 cut(s) 428, 492
Sau96I GGNCC 2 cut(s) 29, 668
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 2 cut(s) 356, 438
SetI ASST 8 cut(s) 22, 41, 87, 194, 537, 556, 583, 591
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 6 cut(s) 6, 54, 70, 141, 519, 651
SspI AATATT 1 cut(s) 273
TaaI ACNGT 3 cut(s) 127, 166, 331
TaiI ACGT 1 cut(s) 87
TaqI TCGA 4 cut(s) 231, 326, 356, 457
TasI AATT 6 cut(s) 6, 54, 70, 141, 519, 651
Tru1I TTAA 3 cut(s) 9, 255, 300
Tru9I TTAA 3 cut(s) 9, 255, 300
TscAI CASTG 1 cut(s) 611
TseI GCWGC 1 cut(s) 570
TspDTI ATGAA 4 cut(s) 113, 323, 485, 689
TspRI CASTG 1 cut(s) 611
VneI GTGCAC 1 cut(s) 434
XapI RAATTY 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.