Prupe.7G096500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001089
Physical Location & Seq
Forward (+)
12833460 .. 12835894
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G096500.1

Sequence Viewer

Length: 918 bp
ATGGCCTTCACCGTAGAAAACCCCAATATGGTCTCTTGGGGCAACCCTCTCGCGACATACTCTGTTGAGCCATTTGACTTGGGATTGAAGGAACAAAGATTGATGCGTGTGAAGATATCAAGGACCGGATTACAGGATGAGCCGGAGATGAAGGTGTCGGATTTGGAAGAAATGAATAAGCAACGTGAAGATGGTGCTGTGAGTTTGAAGATGGAAATGTTTGCATGGGCTACGTATAAGAAGGGTTGGTGGGGAACAGAAGATGTCATGATGGAGGCTCACTGTTTGGATTTGAGGGTTGGTTTCTTGCCTAAATTTGGGTTCGGTTGCTGTATCAGCCTAAGGCCGATGACTTGCTCTACTGGGATCGTCACGTTGCTATGCGTAGCCATGGCCACATCCTTAGTTCCACAGCCCCCGAAAATCAAACTCAACTCTCTCTTGGTGTCGAAAATTAACGTCTCAAACACAAAGCTAGGGGCCAACTTTGACGTGGCCTTCACAATAGAGAACCCTAATCTAGTCTCGTGGATTTACTTTGACCACATCGATGGTTCGATTTCTTACAAAGATAACGCTCTCATAACATACTCGTTGGACCCTTTTGTACTGGGATTGAAGGAACATAGAATGATGCGTGTGAAGATATCCGTGAATGGATTACAGGAAGATCAGCCGGTTGTGAAGGAGAGGGTTTTGGAAGAAATCCATAGGCAACGTGAAGATGGTGCTGTGAATTTCAGCCTGGAAATGTTTGCACGGGCTACGTATAGGACCGGTTGGTGGGGGACAAAGTCTGTTTTAATGAACCCTCAATGTTTGGATTTGAGGGTTGGCTTCTTGCCTAAAGTTGGTTTCGGAAGCTGGATTAGTGGAGGGCCTATGACTTGCGCAGTTCCAATGCTAATTGATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

306

Amino Acids

34.36

Weight (kDa)

5.9

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 892
AccII CGCG 1 cut(s) 53
AclWI GGATC 1 cut(s) 374
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 2 cut(s) 314, 736
AfaI GTAC 1 cut(s) 609
AfiI CCNNNNNNNGG 4 cut(s) 28, 317, 783, 851
AgeI ACCGGT 1 cut(s) 776
AgsI TTSAA 3 cut(s) 88, 208, 619
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 1 cut(s) 744
AluBI AGCT 2 cut(s) 475, 864
AluI AGCT 2 cut(s) 475, 864
Alw26I GTCTC 3 cut(s) 37, 466, 529
AlwI GGATC 1 cut(s) 374
AoxI GGCC 6 cut(s) 3, 344, 393, 480, 495, 878
ApoI RAATTY 2 cut(s) 314, 736
AsiGI ACCGGT 1 cut(s) 776
AspLEI GCGC 1 cut(s) 893
AspS9I GGNCC 5 cut(s) 123, 480, 598, 774, 878
AvaII GGWCC 3 cut(s) 123, 598, 774
AxyI CCTNAGG 1 cut(s) 341
BalI TGGCCA 1 cut(s) 395
BauI CACGAG 1 cut(s) 526
BccI CCATC 5 cut(s) 185, 205, 265, 545, 719
BcgI CGANNNNNNTGC 2 cut(s) 31, 65
BciT130I CCWGG 1 cut(s) 746
BcoDI GTCTC 3 cut(s) 37, 466, 529
BfaI CTAG 2 cut(s) 476, 521
Bme1390I CCNGG 1 cut(s) 746
Bme18I GGWCC 3 cut(s) 123, 598, 774
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 5 cut(s) 123, 480, 598, 774, 878
BmiI GGNNCC 2 cut(s) 481, 600
BmrFI CCNGG 1 cut(s) 746
BmrI ACTGGG 2 cut(s) 372, 620
BmsI GCATC 2 cut(s) 93, 624
BmuI ACTGGG 2 cut(s) 372, 620
Bsa29I ATCGAT 1 cut(s) 549
BsaAI YACGTR 2 cut(s) 234, 768
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 2 cut(s) 125, 776
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 317, 783, 851
Bse118I RCCGGY 2 cut(s) 676, 776
Bse1I ACTGG 2 cut(s) 367, 615
Bse21I CCTNAGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 746
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 142, 398
BseLI CCNNNNNNNGG 4 cut(s) 28, 317, 783, 851
BseNI ACTGG 2 cut(s) 367, 615
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 6 cut(s) 5, 346, 395, 482, 497, 880
BshTI ACCGGT 1 cut(s) 776
BshVI ATCGAT 1 cut(s) 549
BsiSI CCGG 4 cut(s) 126, 143, 677, 777
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 4 cut(s) 28, 317, 783, 851
BsmAI GTCTC 3 cut(s) 37, 466, 529
BsmBI CGTCTC 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 802
BsnI GGCC 6 cut(s) 5, 346, 395, 482, 497, 880
Bso31I GGTCTC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 366, 670
Bsp19I CCATGG 1 cut(s) 390
Bsp68I TCGCGA 1 cut(s) 53
BspANI GGCC 6 cut(s) 5, 346, 395, 482, 497, 880
BspDI ATCGAT 1 cut(s) 549
BspFNI CGCG 1 cut(s) 53
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 481, 600
BspPI GGATC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 37
BsrFI RCCGGY 2 cut(s) 676, 776
BsrI ACTGG 2 cut(s) 367, 615
BssAI RCCGGY 2 cut(s) 676, 776
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 2 cut(s) 366, 670
BssSI CACGAG 1 cut(s) 526
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 746
Bst4CI ACNGT 2 cut(s) 13, 284
BstBAI YACGTR 2 cut(s) 234, 768
BstDEI CTNAG 2 cut(s) 341, 403
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 142, 398
BstFNI CGCG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 893
BstKTI GATC 2 cut(s) 369, 673
BstMAI GTCTC 3 cut(s) 37, 466, 529
BstMBI GATC 2 cut(s) 366, 670
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 744
BstSNI TACGTA 2 cut(s) 234, 768
BstUI CGCG 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 551
Bsu15I ATCGAT 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 341
BsuRI GGCC 6 cut(s) 5, 346, 395, 482, 497, 880
BsuTUI ATCGAT 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 390
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 2 cut(s) 142, 398
BtsIMutI CAGTG 1 cut(s) 280
BtuMI TCGCGA 1 cut(s) 53
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 893
Cfr10I RCCGGY 2 cut(s) 676, 776
Cfr13I GGNCC 5 cut(s) 123, 480, 598, 774, 878
ClaI ATCGAT 1 cut(s) 549
Csp6I GTAC 1 cut(s) 608
CspAI ACCGGT 1 cut(s) 776
CviAII CATG 3 cut(s) 225, 268, 391
CviQI GTAC 1 cut(s) 608
DdeI CTNAG 2 cut(s) 341, 403
DpnI GATC 2 cut(s) 368, 672
DpnII GATC 2 cut(s) 366, 670
EaeI YGGCCR 1 cut(s) 393
Eco105I TACGTA 2 cut(s) 234, 768
Eco130I CCWWGG 1 cut(s) 390
Eco31I GGTCTC 1 cut(s) 37
Eco32I GATATC 2 cut(s) 117, 648
Eco47I GGWCC 3 cut(s) 123, 598, 774
Eco81I CCTNAGG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 878
EcoRII CCWGG 1 cut(s) 744
EcoRV GATATC 2 cut(s) 117, 648
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 466
FaeI CATG 3 cut(s) 228, 271, 394
FaqI GGGAC 1 cut(s) 802
FatI CATG 3 cut(s) 224, 267, 390
FokI GGATG 2 cut(s) 149, 385
FspBI CTAG 2 cut(s) 476, 521
FspI TGCGCA 1 cut(s) 892
GlaI GCGC 1 cut(s) 892
HaeIII GGCC 6 cut(s) 5, 346, 395, 482, 497, 880
HapII CCGG 4 cut(s) 126, 143, 677, 777
HhaI GCGC 1 cut(s) 893
Hin1II CATG 3 cut(s) 228, 271, 394
Hin6I GCGC 1 cut(s) 891
HinP1I GCGC 1 cut(s) 891
HpaII CCGG 4 cut(s) 126, 143, 677, 777
Hpy188I TCNGA 2 cut(s) 160, 860
Hpy188III TCNNGA 2 cut(s) 52, 268
HpyAV CCTTC 7 cut(s) 16, 82, 145, 235, 508, 613, 679
HpyCH4III ACNGT 2 cut(s) 13, 284
HpyCH4IV ACGT 7 cut(s) 184, 233, 374, 459, 492, 718, 767
HpyCH4V TGCA 2 cut(s) 224, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 2 cut(s) 341, 403
HpySE526I ACGT 7 cut(s) 184, 233, 374, 459, 492, 718, 767
Hsp92II CATG 3 cut(s) 228, 271, 394
HspAI GCGC 1 cut(s) 891
Kzo9I GATC 2 cut(s) 366, 670
LweI GCATC 2 cut(s) 93, 624
MaeI CTAG 2 cut(s) 476, 521
MaeII ACGT 7 cut(s) 184, 233, 374, 459, 492, 718, 767
MaeIII GTNAC 1 cut(s) 370
MalI GATC 2 cut(s) 368, 672
MboI GATC 2 cut(s) 366, 670
MboII GAAGA 9 cut(s) 124, 179, 200, 220, 272, 655, 680, 713, 734
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 4 cut(s) 314, 453, 736, 906
MluNI TGGCCA 1 cut(s) 395
MmeI TCCRAC 2 cut(s) 138, 576
MnlI CCTC 7 cut(s) 57, 268, 288, 684, 822, 822, 869
Mox20I TGGCCA 1 cut(s) 395
MscI TGGCCA 1 cut(s) 395
MseI TTAA 2 cut(s) 456, 803
MslI CAYNNNNRTG 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 395
MspI CCGG 4 cut(s) 126, 143, 677, 777
MspR9I CCNGG 1 cut(s) 746
MvaI CCWGG 1 cut(s) 746
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 336
NcoI CCATGG 1 cut(s) 390
NdeII GATC 2 cut(s) 366, 670
NlaIII CATG 3 cut(s) 228, 271, 394
NlaIV GGNNCC 2 cut(s) 481, 600
NmuCI GTSAC 1 cut(s) 370
NruI TCGCGA 1 cut(s) 53
NsbI TGCGCA 1 cut(s) 892
PagI TCATGA 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 793
PinAI ACCGGT 1 cut(s) 776
Ppu21I YACGTR 2 cut(s) 234, 768
Psp6I CCWGG 1 cut(s) 744
PspGI CCWGG 1 cut(s) 744
PspN4I GGNNCC 2 cut(s) 481, 600
PspPI GGNCC 5 cut(s) 123, 480, 598, 774, 878
PsyI GACNNNGTC 1 cut(s) 793
RruI TCGCGA 1 cut(s) 53
RsaI GTAC 1 cut(s) 609
RsaNI GTAC 1 cut(s) 608
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 2 cut(s) 456, 803
Sau3AI GATC 2 cut(s) 366, 670
Sau96I GGNCC 5 cut(s) 123, 480, 598, 774, 878
ScrFI CCNGG 1 cut(s) 746
SfaNI GCATC 2 cut(s) 93, 624
SinI GGWCC 3 cut(s) 123, 598, 774
SmiMI CAYNNNNRTG 1 cut(s) 549
SnaBI TACGTA 2 cut(s) 234, 768
Sse9I AATT 4 cut(s) 314, 453, 736, 906
SspMI CTAG 2 cut(s) 476, 521
StyD4I CCNGG 1 cut(s) 744
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 2 cut(s) 13, 284
TaiI ACGT 7 cut(s) 187, 236, 377, 462, 495, 721, 770
TaqI TCGA 3 cut(s) 449, 549, 557
TasI AATT 4 cut(s) 314, 453, 736, 906
TatI WGTACW 1 cut(s) 607
Tru1I TTAA 2 cut(s) 456, 803
Tru9I TTAA 2 cut(s) 456, 803
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 164, 188, 821
TspGWI ACGGA 1 cut(s) 640
TspRI CASTG 1 cut(s) 287
Tth111I GACNNNGTC 1 cut(s) 793
VpaK11BI GGWCC 3 cut(s) 123, 598, 774
XapI RAATTY 2 cut(s) 314, 736
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XspI CTAG 2 cut(s) 476, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.