Rroxscaffold_2G00119740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001089
Physical Location & Seq
Forward (+)
51717089 .. 51717841
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119740.1

Sequence Viewer

Length: 753 bp
ATGGCTTCTTTGTCACCATCATCAAAGCATGCAATAGTTCCATTGCTTCCAGTTTCTTACCAGCCCAATTCCATAAAATCCCAGAGCAATAACACTCCTAGGTCATCATCAACTATGAAAGCGTCATGGTGGACACCAACCATTGCCACATTCATTCTTCTCATTTCCCTACCTTTTCTGTTTGTCGGCATCATTGCATGTTCAAGAATTCGTCGAGAGCTTTCTCTAGGTCCCCAAGCTCCCCTCGTCCAAATCACTGCCTTATCCGTCCACAAATTTAATGTCTCCGAAACAAACTTGACAGCCGAATGGGATGTCAAGTTCAGAATGGAGAACCCAAACCTTGTTTCTTACATCTCTTTCGACCGCGTCGAGGGCTTCATTCTGTCCGAGGACACGGTGCCATTAGCTATAAAGTCGATCGAGCCGTTCGAGTTGACCATGAGGACAGAGAAAGAAGTGCATATGAGGGTCGCAATGAACAAGTGGGATGGCGAGCAGCCAGCGCTAAAACAAGGGGTGTTGGAGAAGATGATGAAGGATAGGGAAACAGGGGGAGTAAGGTTCGGCGTGCAGATGGCGATTTGGGCCACGTATAGGACTGGTTGGTTGTGGAAGAGGCAGCATGTGATTATGAATCCTCAATGCTTGGATTTGCCAGTGGCGTTTGTGCCTGGCACCACCACCATAGGTTTTGGAATTTTGATGGGTGCTGTGCCTTGGACGTGCTACGTTCCCATGCTAGCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

250

Amino Acids

28.07

Weight (kDa)

9.01

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 400, 677
AccII CGCG 1 cut(s) 369
AciI CCGC 1 cut(s) 367
AcsI RAATTY 3 cut(s) 207, 275, 699
AfeI AGCGCT 1 cut(s) 507
AfiI CCNNNNNNNGG 2 cut(s) 373, 597
AgsI TTSAA 1 cut(s) 204
AjiI CACGTC 1 cut(s) 726
AjnI CCWGG 1 cut(s) 673
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 3 cut(s) 220, 239, 410
AluI AGCT 3 cut(s) 220, 239, 410
Alw26I GTCTC 1 cut(s) 289
Aor51HI AGCGCT 1 cut(s) 507
AoxI GGCC 1 cut(s) 588
ApeKI GCWGC 2 cut(s) 499, 622
ApoI RAATTY 3 cut(s) 207, 275, 699
ArsI GACNNNNNNTTYG 4 cut(s) 267, 299, 300, 332
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 230, 588
AsuHPI GGTGA 1 cut(s) 6
AsuNHI GCTAGC 1 cut(s) 742
AvaII GGWCC 1 cut(s) 230
AvrII CCTAGG 1 cut(s) 98
BanI GGYRCC 2 cut(s) 400, 677
BbvI GCAGC 2 cut(s) 511, 634
BccI CCATC 4 cut(s) 25, 485, 571, 700
BceAI ACGGC 1 cut(s) 412
BciT130I CCWGG 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 3 cut(s) 99, 227, 743
BfoI RGCGCY 1 cut(s) 509
BisI GCNGC 2 cut(s) 500, 623
BlnI CCTAGG 1 cut(s) 98
BlsI GCNGC 2 cut(s) 501, 624
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 726
BmgT120I GGNCC 2 cut(s) 230, 588
BmiI GGNNCC 3 cut(s) 232, 402, 679
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 1 cut(s) 198
BmtI GCTAGC 1 cut(s) 746
BsaAI YACGTR 1 cut(s) 594
BsaJI CCNNGG 3 cut(s) 98, 390, 719
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 597
Bse1I ACTGG 3 cut(s) 50, 607, 659
Bse3DI GCAATG 4 cut(s) 41, 141, 192, 483
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 3 cut(s) 98, 390, 719
BseGI GGATG 2 cut(s) 319, 496
BseLI CCNNNNNNNGG 2 cut(s) 373, 597
BseMI GCAATG 4 cut(s) 41, 141, 192, 483
BseNI ACTGG 3 cut(s) 50, 607, 659
BseXI GCAGC 2 cut(s) 511, 634
BsgI GTGCAG 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 369
Bsh1285I CGRYCG 2 cut(s) 367, 423
BshFI GGCC 1 cut(s) 590
BshNI GGYRCC 2 cut(s) 400, 677
BsiEI CGRYCG 2 cut(s) 367, 423
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 373, 597
BsmAI GTCTC 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 590
Bsp143I GATC 1 cut(s) 420
BspACI CCGC 1 cut(s) 367
BspANI GGCC 1 cut(s) 590
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 3 cut(s) 232, 402, 679
BspOI GCTAGC 1 cut(s) 746
BspT107I GGYRCC 2 cut(s) 400, 677
BsrDI GCAATG 4 cut(s) 41, 141, 192, 483
BsrI ACTGG 3 cut(s) 50, 607, 659
BssECI CCNNGG 3 cut(s) 98, 390, 719
BssMI GATC 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 98, 719
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 594
BstC8I GCNNGC 5 cut(s) 30, 497, 504, 572, 744
BstF5I GGATG 2 cut(s) 319, 496
BstFNI CGCG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 509
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 1 cut(s) 423
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 1 cut(s) 420
BstMCI CGRYCG 2 cut(s) 367, 423
BstMWI GCNNNNNNNGC 3 cut(s) 375, 505, 587
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 3 cut(s) 32, 201, 629
BstSCI CCNGG 1 cut(s) 673
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 511, 634
BsuRI GGCC 1 cut(s) 590
BtrI CACGTC 1 cut(s) 726
BtsCI GGATG 2 cut(s) 319, 496
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 666
Cac8I GCNNGC 5 cut(s) 30, 497, 504, 572, 744
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 230, 588
CseI GACGC 2 cut(s) 111, 358
CviAII CATG 6 cut(s) 29, 126, 198, 442, 626, 739
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
Eco130I CCWWGG 2 cut(s) 98, 719
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 507
EcoO109I RGGNCCY 1 cut(s) 230
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 98, 719
ErhI CCWWGG 2 cut(s) 98, 719
FaeI CATG 6 cut(s) 32, 129, 201, 445, 629, 742
FaqI GGGAC 1 cut(s) 216
FatI CATG 6 cut(s) 28, 125, 197, 441, 625, 738
FauNDI CATATG 1 cut(s) 465
Fnu4HI GCNGC 2 cut(s) 500, 623
FokI GGATG 2 cut(s) 326, 503
Fsp4HI GCNGC 2 cut(s) 500, 623
FspBI CTAG 3 cut(s) 99, 227, 743
GlaI GCGC 1 cut(s) 507
GluI GCNGC 2 cut(s) 500, 623
HaeII RGCGCY 1 cut(s) 509
HaeIII GGCC 1 cut(s) 590
HgaI GACGC 2 cut(s) 111, 358
HhaI GCGC 1 cut(s) 508
Hin1II CATG 6 cut(s) 32, 129, 201, 445, 629, 742
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HinfI GANTC 1 cut(s) 637
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 3 cut(s) 132, 271, 438
Hpy188I TCNGA 3 cut(s) 289, 326, 391
Hpy188III TCNNGA 2 cut(s) 204, 215
Hpy8I GTNNAC 3 cut(s) 132, 271, 438
Hpy99I CGWCG 2 cut(s) 216, 374
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 3 cut(s) 593, 725, 732
HpyCH4V TGCA 4 cut(s) 32, 197, 463, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 375, 505, 587
HpySE526I ACGT 3 cut(s) 593, 725, 732
Hsp92II CATG 6 cut(s) 32, 129, 201, 445, 629, 742
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 1 cut(s) 420
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 9 cut(s) 63, 74, 95, 516, 537, 588, 660, 672, 687
Lsp1109I GCAGC 2 cut(s) 511, 634
LweI GCATC 1 cut(s) 198
MaeI CTAG 3 cut(s) 99, 227, 743
MaeII ACGT 3 cut(s) 593, 725, 732
MaeIII GTNAC 1 cut(s) 12
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 3 cut(s) 149, 541, 628
MluCI AATT 4 cut(s) 67, 207, 275, 699
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 7 cut(s) 254, 367, 385, 438, 462, 612, 651
MseI TTAA 2 cut(s) 279, 751
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 375, 505, 587
NdeI CATATG 1 cut(s) 465
NdeII GATC 1 cut(s) 420
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 6 cut(s) 32, 129, 201, 445, 629, 742
NlaIV GGNNCC 3 cut(s) 232, 402, 679
NmuCI GTSAC 1 cut(s) 12
NspI RCATGY 3 cut(s) 32, 201, 629
PaeI GCATGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 3 cut(s) 369, 425, 429
PfeI GAWTC 1 cut(s) 637
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 2 cut(s) 501, 624
Ple19I CGATCG 1 cut(s) 423
Ppu21I YACGTR 1 cut(s) 594
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 3 cut(s) 232, 402, 679
PspPI GGNCC 2 cut(s) 230, 588
PspPPI RGGWCCY 1 cut(s) 230
PsyI GACNNNGTC 1 cut(s) 368
PvuI CGATCG 1 cut(s) 423
SaqAI TTAA 2 cut(s) 279, 751
SatI GCNGC 2 cut(s) 500, 623
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 2 cut(s) 230, 588
ScrFI CCNGG 1 cut(s) 675
SfaNI GCATC 1 cut(s) 198
SinI GGWCC 1 cut(s) 230
SphI GCATGC 1 cut(s) 32
Sse9I AATT 4 cut(s) 67, 207, 275, 699
SsiI CCGC 1 cut(s) 367
SspMI CTAG 3 cut(s) 99, 227, 743
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 2 cut(s) 98, 719
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 3 cut(s) 596, 728, 735
TaqI TCGA 6 cut(s) 214, 363, 372, 419, 423, 432
TasI AATT 4 cut(s) 67, 207, 275, 699
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 2 cut(s) 279, 751
Tru9I TTAA 2 cut(s) 279, 751
TscAI CASTG 2 cut(s) 262, 666
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 2 cut(s) 499, 622
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 6 cut(s) 131, 142, 370, 494, 551, 650
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 2 cut(s) 262, 666
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 3 cut(s) 207, 275, 699
XceI RCATGY 3 cut(s) 32, 201, 629
XmaJI CCTAGG 1 cut(s) 98
XspI CTAG 3 cut(s) 99, 227, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.