FvH4_5g22901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001089
Physical Location & Seq
Reverse (-)
14191447 .. 14193322
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22901.t1

Sequence Viewer

Length: 738 bp
ATGTCTTTGCACGACTTTGACAGAACATGTTGCAGTTTTCTCATTACAATGGAAAGTAAGCTCAAAGCTCTTGAAGGCACAGACAACTCACCCTTACTCCCAGTTTCAGATAACGCTAATTCAAACCCTTACGTTCAGCAGTCTAGGAAATCGCATTATATTTCCGAAGTTAGAATTGTCGACATCATAGTTCTAATGGTTACATTTGGAACAATCTTGTCCTCGCCTTCTGTGTTCACCTTCATGTCCTTGCCTCCCCAAACTCCAAGTTTCCAACTCGACTCTCTTTTCCTTTCAAATTTCAACATTTCAAACACAACCTTCAGGACTGATTGGGATACGACTCTTACTATAGAGAACCCCAACATGATCTCGACGGTTAACATCAATAGCATAAAGGGATTGATTTCGTACAAAGACAACTCTCTTGCTATGTACTCGATCAAACCATTGGAGTTGGGATGCATGGAGCACAGGCTGGTGCATGTGAAGATATCAACAATGACAACGAATAGATGGATTTTCGAAGAGATCAATAGACAACGAGATGAAAATGAAGCAGTGAGGTTCAACATGACAATGTTTGTTTCACCTACATATACGAGTGGCTGGTGGGGAATCGAAAATGTTGTGTTAAACCCTCGGTGTATGGATTTGAAGGTTGCATTCCTTCCTAGAGCAGGGTTCGGAAGTTGGGTAAATAGAGGGCCCAAGAAATGCTCACTTCCTATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

246

Amino Acids

27.88

Weight (kDa)

6.89

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 2 cut(s) 413, 437
AfiI CCNNNNNNNGG 1 cut(s) 680
AflIII ACRYGT 1 cut(s) 26
AgsI TTSAA 7 cut(s) 74, 123, 297, 304, 312, 571, 658
AluBI AGCT 2 cut(s) 61, 68
AluI AGCT 2 cut(s) 61, 68
Alw21I GWGCWC 1 cut(s) 474
AoxI GGCC 1 cut(s) 707
ApaI GGGCCC 1 cut(s) 711
ApoI RAATTY 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 707, 708
AsuHPI GGTGA 3 cut(s) 81, 229, 582
AsuII TTCGAA 1 cut(s) 525
BaeGI GKGCMC 1 cut(s) 711
BanII GRGCYC 1 cut(s) 711
Bbv12I GWGCWC 1 cut(s) 474
BccI CCATC 1 cut(s) 510
BciVI GTATCC 1 cut(s) 331
BfaI CTAG 2 cut(s) 144, 675
BfmI CTRYAG 1 cut(s) 351
BfuI GTATCC 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 707, 708
BmiI GGNNCC 1 cut(s) 709
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 641
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse1I ACTGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 641
BseGI GGATG 1 cut(s) 467
BseLI CCNNNNNNNGG 1 cut(s) 680
BseNI ACTGG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 711
BshFI GGCC 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 474
BslI CCNNNNNNNGG 1 cut(s) 680
BsmI GAATGC 1 cut(s) 665
BsnI GGCC 1 cut(s) 709
Bsp119I TTCGAA 1 cut(s) 525
Bsp120I GGGCCC 1 cut(s) 707
Bsp1286I GDGCHC 2 cut(s) 474, 711
Bsp143I GATC 3 cut(s) 369, 441, 531
BspANI GGCC 1 cut(s) 709
BspLI GGNNCC 1 cut(s) 709
BspT104I TTCGAA 1 cut(s) 525
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 641
BssMI GATC 3 cut(s) 369, 441, 531
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 522
BstBI TTCGAA 1 cut(s) 525
BstENI CCTNNNNNAGG 1 cut(s) 678
BstF5I GGATG 1 cut(s) 467
BstKTI GATC 3 cut(s) 372, 444, 534
BstMBI GATC 3 cut(s) 369, 441, 531
BstNSI RCATGY 2 cut(s) 30, 488
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 711
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 709
BtsCI GGATG 1 cut(s) 467
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
Cfr13I GGNCC 2 cut(s) 707, 708
Csp6I GTAC 2 cut(s) 412, 436
CviAII CATG 6 cut(s) 27, 244, 367, 466, 485, 574
CviJI RGCY 5 cut(s) 61, 68, 478, 609, 709
CviKI_1 RGCY 5 cut(s) 61, 68, 478, 609, 709
CviQI GTAC 2 cut(s) 412, 436
DpnI GATC 3 cut(s) 371, 443, 533
DpnII GATC 3 cut(s) 369, 441, 531
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Eco24I GRGCYC 1 cut(s) 711
Eco32I GATATC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 307
EcoNI CCTNNNNNAGG 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 707
EcoRV GATATC 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 711
FaeI CATG 6 cut(s) 30, 247, 370, 469, 488, 577
FatI CATG 6 cut(s) 26, 243, 366, 465, 484, 573
FblI GTMKAC 1 cut(s) 180
FokI GGATG 1 cut(s) 474
FriOI GRGCYC 1 cut(s) 711
FspBI CTAG 2 cut(s) 144, 675
HaeIII GGCC 1 cut(s) 709
Hin1II CATG 6 cut(s) 30, 247, 370, 469, 488, 577
HincII GTYRAC 2 cut(s) 181, 382
HindII GTYRAC 2 cut(s) 181, 382
HinfI GANTC 3 cut(s) 281, 343, 618
HpaI GTTAAC 1 cut(s) 382
HphI GGTGA 3 cut(s) 81, 229, 582
Hpy166II GTNNAC 3 cut(s) 181, 237, 382
Hpy188I TCNGA 3 cut(s) 109, 166, 689
Hpy188III TCNNGA 3 cut(s) 71, 325, 373
Hpy8I GTNNAC 3 cut(s) 181, 237, 382
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 6 cut(s) 68, 237, 250, 331, 652, 680
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 5 cut(s) 10, 33, 465, 484, 665
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 6 cut(s) 30, 247, 370, 469, 488, 577
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 3 cut(s) 369, 441, 531
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 6 cut(s) 114, 310, 460, 464, 595, 666
LweI GCATC 1 cut(s) 452
MaeI CTAG 2 cut(s) 144, 675
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 371, 443, 533
MboI GATC 3 cut(s) 369, 441, 531
MboII GAAGA 2 cut(s) 502, 539
MhlI GDGCHC 2 cut(s) 474, 711
MluCI AATT 3 cut(s) 118, 174, 298
MlyI GAGTC 2 cut(s) 275, 337
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 5 cut(s) 232, 264, 558, 651, 698
Mph1103I ATGCAT 1 cut(s) 467
MseI TTAA 2 cut(s) 381, 635
MslI CAYNNNNRTG 3 cut(s) 47, 242, 578
Mva1269I GAATGC 1 cut(s) 665
NdeII GATC 3 cut(s) 369, 441, 531
NlaIII CATG 6 cut(s) 30, 247, 370, 469, 488, 577
NlaIV GGNNCC 1 cut(s) 709
NsiI ATGCAT 1 cut(s) 467
NspI RCATGY 2 cut(s) 30, 488
NspV TTCGAA 1 cut(s) 525
PciI ACATGT 1 cut(s) 26
PctI GAATGC 1 cut(s) 665
PfeI GAWTC 1 cut(s) 618
PleI GAGTC 2 cut(s) 275, 337
PpsI GAGTC 2 cut(s) 275, 337
PscI ACATGT 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 709
PspOMI GGGCCC 1 cut(s) 707
PspPI GGNCC 2 cut(s) 707, 708
RsaI GTAC 2 cut(s) 413, 437
RsaNI GTAC 2 cut(s) 412, 436
RseI CAYNNNNRTG 3 cut(s) 47, 242, 578
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 381, 635
Sau3AI GATC 3 cut(s) 369, 441, 531
Sau96I GGNCC 2 cut(s) 707, 708
SchI GAGTC 2 cut(s) 275, 337
SduI GDGCHC 2 cut(s) 474, 711
SetI ASST 8 cut(s) 63, 70, 135, 242, 323, 569, 595, 663
SfaNI GCATC 1 cut(s) 452
SfcI CTRYAG 1 cut(s) 351
SfuI TTCGAA 1 cut(s) 525
SmiMI CAYNNNNRTG 3 cut(s) 47, 242, 578
Sse9I AATT 3 cut(s) 118, 174, 298
SspMI CTAG 2 cut(s) 144, 675
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 135
TaqI TCGA 6 cut(s) 180, 279, 374, 440, 525, 621
TasI AATT 3 cut(s) 118, 174, 298
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 2 cut(s) 381, 635
Tru9I TTAA 2 cut(s) 381, 635
TscAI CASTG 1 cut(s) 567
TspDTI ATGAA 3 cut(s) 232, 564, 570
TspRI CASTG 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 678
XapI RAATTY 1 cut(s) 298
XceI RCATGY 2 cut(s) 30, 488
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 2 cut(s) 144, 675
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.