Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001089

Physical Location & Seq

Genomic Coordinates Forward (+)

8497444 .. 8498583

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G048100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTTCAACATCGTCGGTGATGGAGATTCCGATTTCAAAGCATGCAAACGCTGAGCGCTCAGCCAAGGTTCCATTGCTCCCGGTTTCACACAACCCTTATTCAAAATCTCATGTTCCTACAAGGTGTAATGACAAGGTCTCCTCTGTACCAATAATCGCCAAATTCACCCTTGTCATTTTTCTCTCCCTTGTCGCTCTTGCCATTGTTGTATTTTTGCCATTAATACGGAAGGAGCTTACTTTAGGCCCCCAAGCCCCCGTGGTTGAACTTTCCGCCTTAACCATCCATAAATTCAACGTCTCTGAAACAAACCTGACGGCCGAATGGGACGTCAAGTTGAAAATTGGAAACCCTAATCTTGTCTCTCAAATTTGGTTCGACCGGATCGAAGGCTTTGTTCTGTACGAAGACAGAACGCTGGCCATCGAGCAGGTGGAGCCGTTCGGTCTGCCTATGAAGACGAAGAACCAAGTGCGGCTCAGGCTTAGAATGGCGAATTGGGAAGGGGATCAACCGGCGCTTAAACAAGGGATGTTGAAGAAGATGAAGAGGGATAGAAAGCTTGGGGGTGTGAGATTTAGTGTCCAGATGGCAATTTGGGCGACGTATAGGAGTGTGTGGGGGCGGTCGGCGCAACGCGTGATCATGAACCCACAGTGTTTAGATTTGCACGTTGCGTTCGTGCCGGGAGCCACCGCCATAGGTTTTGGGATTTTGATTGGTGATGTACCTAGGAGGTGCTATGTTCCCATGCTAGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

256

Amino Acids

28.53

Weight (kDa)

9.85

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52460
fragaria_vesca	FvH4_3g40821 FvH4_5g22901 FvH4_6g24970
malus_domestica	MD07G1151300.v1.1 MD12G1039100.v1.1 MD12G1087900.v1.1 MD14G1037800.v1.1 MD14G1037900.v1.1
prunus_persica	Prupe.7G048100_v2.0.a1 Prupe.7G096300_v2.0.a1 Prupe.7G096500_v2.0.a1 Prupe.7G096700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0124701 RchiOBHm_Chr3g0475771 RchiOBHm_Chr5g0073621 RchiOBHm_Chr7g0211331 RchiOBHm_Chr7g0211341
rosa_laevigata	RLG00000003008 RLG00000003009 RLG00000018813 RLG00000023818 RLG00000036394
rosa_multiflora	Rmu_sc0000539.1_g000081 Rmu_sc0001226.1_g000003 Rmu_ssc0000242.1_g000009 Rmu_ssc0000242.1_g000017
rosa_roxburghii	Rroxscaffold_2G00119740 Rroxscaffold_3G00247920
rosa_rugosa	Rorug02G0251900 Rorug04G0403500.1 Rorug05G0424700 Rorug05G0425600 Rorug05G0425600 Rorug07G0125100 Rorug07G0125200 Rorug07G0170100
rosa_samantha	Rh2AG310900 Rh2CG298300 Rh2DG334900 Rh3AG201100 Rh3CG226100 Rh3DG226700 Rh5CG526300 Rh5CG526600 Rh5DG029800 Rh5DG515500 Rh5DG515600 Rh7AG257500 Rh7AG257600 Rh7BG251600 Rh7BG251700 Rh7DG264200 Rh7DG264300 Rh7DG309500
rosa_wichuraiana	Rw2G025150 Rw3G018290 Rw5G044820 Rw7G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
AatII	GACGTC	1 cut(s)	336
Acc36I	ACCTGC	1 cut(s)	424
AccII	CGCG	1 cut(s)	642
AciI	CCGC	4 cut(s)	276, 478, 628, 699
AclWI	GGATC	2 cut(s)	395, 519
AcoI	YGGCCR	2 cut(s)	321, 423
AcsI	RAATTY	3 cut(s)	164, 293, 372
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	3 cut(s)	150, 407, 732
AfeI	AGCGCT	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	7 cut(s)	9, 39, 105, 269, 298, 343, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	484, 516
AluBI	AGCT	3 cut(s)	238, 565, 761
AluI	AGCT	3 cut(s)	238, 565, 761
Alw26I	GTCTC	3 cut(s)	145, 307, 370
AlwI	GGATC	2 cut(s)	395, 519
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	3 cut(s)	247, 321, 423
ApoI	RAATTY	3 cut(s)	164, 293, 372
ArsI	GACNNNNNNTTYG	2 cut(s)	318, 350
AseI	ATTAAT	1 cut(s)	224
AspA2I	CCTAGG	1 cut(s)	734
AspLEI	GCGC	3 cut(s)	60, 523, 637
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	2 cut(s)	83, 690
AsuHPI	GGTGA	3 cut(s)	31, 160, 737
AsuNHI	GCTAGC	1 cut(s)	757
AvrII	CCTAGG	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	425
BbsI	GAAGAC	2 cut(s)	417, 467
BccI	CCATC	4 cut(s)	16, 293, 434, 586
BceAI	ACGGC	2 cut(s)	336, 427
BclI	TGATCA	1 cut(s)	645
BcnI	CCSGG	2 cut(s)	83, 690
BcoDI	GTCTC	3 cut(s)	145, 307, 370
BfaI	CTAG	2 cut(s)	735, 758
BfoI	RGCGCY	2 cut(s)	61, 524
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	479
BlnI	CCTAGG	1 cut(s)	734
BlpI	GCTNAGC	2 cut(s)	54, 61
BlsI	GCNGC	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	83, 690
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	4 cut(s)	72, 250, 441, 694
BmrFI	CCNGG	2 cut(s)	83, 690
BmtI	GCTAGC	1 cut(s)	761
BpiI	GAAGAC	2 cut(s)	417, 467
Bpu10I	CCTNAGC	1 cut(s)	482
Bpu1102I	GCTNAGC	2 cut(s)	54, 61
BpuMI	CCSGG	2 cut(s)	83, 690
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	66, 261, 734
BsaWI	WCCGGW	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bse118I	RCCGGY	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	74
BseDI	CCNNGG	3 cut(s)	66, 261, 734
BseGI	GGATG	2 cut(s)	285, 540
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	4 cut(s)	45, 75, 496, 753
BseRI	GAGGAG	1 cut(s)	133
BseX3I	CGGCCG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	642
Bsh1285I	CGRYCG	3 cut(s)	324, 385, 632
BshFI	GGCC	3 cut(s)	249, 323, 425
BsiEI	CGRYCG	3 cut(s)	324, 385, 632
BsiSI	CCGG	4 cut(s)	83, 385, 518, 689
BslFI	GGGAC	1 cut(s)	344
BsmAI	GTCTC	3 cut(s)	145, 307, 370
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	249, 323, 425
Bso31I	GGTCTC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	387, 511, 645
Bsp1720I	GCTNAGC	2 cut(s)	54, 61
BspACI	CCGC	4 cut(s)	276, 478, 628, 699
BspANI	GGCC	3 cut(s)	249, 323, 425
BspCNI	CTCAG	4 cut(s)	46, 74, 495, 754
BspFNI	CGCG	1 cut(s)	642
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	4 cut(s)	72, 250, 441, 694
BspMI	ACCTGC	1 cut(s)	424
BspOI	GCTAGC	1 cut(s)	761
BspPI	GGATC	2 cut(s)	395, 519
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	66, 261, 734
BssMI	GATC	3 cut(s)	387, 511, 645
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	2 cut(s)	66, 734
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	1 cut(s)	545
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	45, 423, 759
BstDEI	CTNAG	5 cut(s)	54, 61, 482, 488, 762
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	2 cut(s)	285, 540
BstFNI	CGCG	1 cut(s)	642
BstH2I	RGCGCY	2 cut(s)	61, 524
BstHHI	GCGC	3 cut(s)	60, 523, 637
BstKTI	GATC	3 cut(s)	390, 514, 648
BstMAI	GTCTC	3 cut(s)	145, 307, 370
BstMBI	GATC	3 cut(s)	387, 511, 645
BstMCI	CGRYCG	3 cut(s)	324, 385, 632
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 484, 602, 634
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	81, 688
BstUI	CGCG	1 cut(s)	642
BstV2I	GAAGAC	2 cut(s)	417, 467
BstZI	CGGCCG	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	249, 323, 425
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	2 cut(s)	285, 540
BtsIMutI	CAGTG	1 cut(s)	665
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	45, 423, 759
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	3 cut(s)	60, 523, 637
Cfr10I	RCCGGY	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	149, 406, 731
CviAII	CATG	4 cut(s)	44, 113, 649, 754
CviQI	GTAC	3 cut(s)	149, 406, 731
DdeI	CTNAG	5 cut(s)	54, 61, 482, 488, 762
DpnI	GATC	3 cut(s)	389, 513, 647
DpnII	GATC	3 cut(s)	387, 511, 645
EaeI	YGGCCR	2 cut(s)	321, 423
EagI	CGGCCG	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
EciI	GGCGGA	1 cut(s)	265
EclXI	CGGCCG	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	66, 734
Eco31I	GGTCTC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	59
Eco52I	CGGCCG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	66, 734
ErhI	CCWWGG	2 cut(s)	66, 734
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	4 cut(s)	47, 116, 652, 757
FaiI	YATR	9 cut(s)	45, 114, 291, 458, 612, 650, 704, 747, 755
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	4 cut(s)	43, 112, 648, 753
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	272, 547
Fsp4HI	GCNGC	1 cut(s)	479
FspBI	CTAG	2 cut(s)	735, 758
GlaI	GCGC	3 cut(s)	59, 522, 636
GluI	GCNGC	1 cut(s)	479
HaeII	RGCGCY	2 cut(s)	61, 524
HaeIII	GGCC	3 cut(s)	249, 323, 425
HapII	CCGG	4 cut(s)	83, 385, 518, 689
HhaI	GCGC	3 cut(s)	60, 523, 637
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	47, 116, 652, 757
Hin6I	GCGC	3 cut(s)	58, 521, 635
HinP1I	GCGC	3 cut(s)	58, 521, 635
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	4 cut(s)	83, 385, 518, 689
HphI	GGTGA	3 cut(s)	31, 160, 737
Hpy188I	TCNGA	2 cut(s)	33, 307
Hpy188III	TCNNGA	2 cut(s)	589, 649
Hpy99I	CGWCG	2 cut(s)	19, 610
HpyAV	CCTTC	3 cut(s)	226, 386, 500
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4IV	ACGT	4 cut(s)	300, 333, 608, 675
HpyCH4V	TGCA	2 cut(s)	47, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 484, 602, 634
HpyF3I	CTNAG	5 cut(s)	54, 61, 482, 488, 762
HpySE526I	ACGT	4 cut(s)	300, 333, 608, 675
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	47, 116, 652, 757
HspAI	GCGC	3 cut(s)	58, 521, 635
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	3 cut(s)	387, 511, 645
LmnI	GCTCC	4 cut(s)	84, 235, 439, 692
LpnPI	CCDG	9 cut(s)	96, 329, 398, 407, 419, 469, 531, 602, 702
MaeI	CTAG	2 cut(s)	735, 758
MaeII	ACGT	4 cut(s)	300, 333, 608, 675
MalI	GATC	3 cut(s)	389, 513, 647
MboI	GATC	3 cut(s)	387, 511, 645
MboII	GAAGA	6 cut(s)	422, 472, 478, 553, 556, 562
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	6 cut(s)	164, 293, 345, 372, 499, 597
MluI	ACGCGT	1 cut(s)	640
MluNI	TGGCCA	1 cut(s)	425
MnlI	CCTC	3 cut(s)	154, 546, 732
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	3 cut(s)	224, 281, 525
Msp20I	TGGCCA	1 cut(s)	425
MspI	CCGG	4 cut(s)	83, 385, 518, 689
MspR9I	CCNGG	2 cut(s)	83, 690
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	4 cut(s)	439, 484, 602, 634
NciI	CCSGG	2 cut(s)	83, 690
NdeII	GATC	3 cut(s)	387, 511, 645
NheI	GCTAGC	1 cut(s)	757
NlaIII	CATG	4 cut(s)	47, 116, 652, 757
NlaIV	GGNNCC	4 cut(s)	72, 250, 441, 694
NspI	RCATGY	1 cut(s)	47
PaeI	GCATGC	1 cut(s)	47
PagI	TCATGA	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 681
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	480
PshBI	ATTAAT	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	72, 250, 441, 694
PspPI	GGNCC	1 cut(s)	248
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	3 cut(s)	150, 407, 732
RsaNI	GTAC	3 cut(s)	149, 406, 731
SaqAI	TTAA	3 cut(s)	224, 281, 525
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	3 cut(s)	387, 511, 645
Sau96I	GGNCC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	83, 690
SphI	GCATGC	1 cut(s)	47
Sse9I	AATT	6 cut(s)	164, 293, 345, 372, 499, 597
SsiI	CCGC	4 cut(s)	276, 478, 628, 699
SspMI	CTAG	2 cut(s)	735, 758
StyD4I	CCNGG	2 cut(s)	81, 688
StyI	CCWWGG	2 cut(s)	66, 734
TaaI	ACNGT	1 cut(s)	660
TaiI	ACGT	4 cut(s)	303, 336, 611, 678
TaqI	TCGA	3 cut(s)	381, 390, 429
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	6 cut(s)	164, 293, 345, 372, 499, 597
TauI	GCSGC	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	3 cut(s)	224, 281, 525
Tru9I	TTAA	3 cut(s)	224, 281, 525
TscAI	CASTG	1 cut(s)	665
TspDTI	ATGAA	3 cut(s)	473, 563, 665
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	665
Tth111I	GACNNNGTC	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	224
XapI	RAATTY	3 cut(s)	164, 293, 372
XceI	RCATGY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmaJI	CCTAGG	1 cut(s)	734
XspI	CTAG	2 cut(s)	735, 758
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.