Rroxscaffold_3G00247920

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
41265434 .. 41266132
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247920.1

Sequence Viewer

Length: 699 bp
ATGGAAATTAATCTCAAAGTTCTTGAAGGCCAAGACAGCTCACCCCTACTTCCAGTTTCAAATAACCATAATTCAAACCCTTATGTTCAGAGGACTATGACAGCACGTTACATTTTTGAAGTTAGAATTGTCCACCTCCTAATTCTAATGGTTACATTTTGGGCAGTCTTGTGCTTGCCTTCTTTTTTCACCTCCATGTTCTTGGTTCCTCAAACTCCGAGTTTCCAATTCAATTCTCTTTTCCTTTCTAACTTTAACATCTCAAACACAACCTTCGGGGCTAACTGGGATATGACCCTTCAAATAGAGAACCCCAACTTGGTCACGAAGATTCACTTCAACATCATAAATGGCTCGATTTCATACAAAGACAATTCTCTTGCAATGTACTCGATAGAGCCATTTGAGTTGGGATACAGGGAGCACAAAACGGTGCACTTGAAAATATCAAAATATCAGACAATGGAAAAGAATGGATGGGTTTTGGATGAGATCAATACGCAACGAGATGAGAATGGAGCTGTGAGTTTCAGCCTCACAATGTTTGTTTCAGCTACATATACAACCGGCTGGTGGGGAATCAAAAAGTTTGTATCGAACCCTCAGTGTTTGGATTTTAGGGTTGCCTTCCTTCCTAAAGCTGGGTTCGGAAATTGGGTAAATGGAGGGCCAATGAAATGCTCACATCCTATATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

232

Amino Acids

26.54

Weight (kDa)

7.75

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 319, 573, 641
AgsI TTSAA 8 cut(s) 26, 60, 75, 119, 232, 302, 340, 442
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 4 cut(s) 39, 521, 554, 641
AluI AGCT 4 cut(s) 39, 521, 554, 641
Alw21I GWGCWC 2 cut(s) 426, 438
Alw44I GTGCAC 1 cut(s) 434
AoxI GGCC 2 cut(s) 28, 668
ApaLI GTGCAC 1 cut(s) 434
AseI ATTAAT 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 668
AsuHPI GGTGA 2 cut(s) 33, 181
BaeGI GKGCMC 1 cut(s) 438
Bbv12I GWGCWC 2 cut(s) 426, 438
BccI CCATC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BciVI GTATCC 1 cut(s) 407
BfuI GTATCC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 668
BmiI GGNNCC 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 3 cut(s) 319, 573, 641
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 2 cut(s) 53, 290
Bse3DI GCAATG 1 cut(s) 390
BseGI GGATG 3 cut(s) 482, 493, 685
BseLI CCNNNNNNNGG 3 cut(s) 319, 573, 641
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 617
BseNI ACTGG 2 cut(s) 53, 290
BseSI GKGCMC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 641
BshFI GGCC 2 cut(s) 30, 670
BsiHKAI GWGCWC 2 cut(s) 426, 438
BsiSI CCGG 1 cut(s) 567
BslI CCNNNNNNNGG 3 cut(s) 319, 573, 641
BsnI GGCC 2 cut(s) 30, 670
Bsp1286I GDGCHC 2 cut(s) 426, 438
Bsp143I GATC 1 cut(s) 492
BspANI GGCC 2 cut(s) 30, 670
BspCNI CTCAG 1 cut(s) 616
BspLI GGNNCC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 2 cut(s) 53, 290
BssAI RCCGGY 1 cut(s) 566
BssMI GATC 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 603
BstF5I GGATG 3 cut(s) 482, 493, 685
BstKTI GATC 1 cut(s) 495
BstMBI GATC 1 cut(s) 492
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 438
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 30, 670
BtsCI GGATG 3 cut(s) 482, 493, 685
BtsIMutI CAGTG 1 cut(s) 611
Cac8I GCNNGC 1 cut(s) 176
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 388
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 1 cut(s) 603
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
FaeI CATG 1 cut(s) 199
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 1 cut(s) 195
FokI GGATG 3 cut(s) 489, 500, 672
GsaI CCCAGC 1 cut(s) 645
HaeIII GGCC 2 cut(s) 30, 670
HapII CCGG 1 cut(s) 567
Hin1II CATG 1 cut(s) 199
HinfI GANTC 2 cut(s) 331, 579
HpaII CCGG 1 cut(s) 567
HphI GGTGA 2 cut(s) 33, 181
Hpy166II GTNNAC 2 cut(s) 133, 436
Hpy188I TCNGA 4 cut(s) 90, 219, 459, 650
Hpy188III TCNNGA 2 cut(s) 23, 325
Hpy8I GTNNAC 2 cut(s) 133, 436
HpyAV CCTTC 6 cut(s) 20, 189, 283, 308, 637, 641
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 383, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 603
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 1 cut(s) 492
LmnI GCTCC 2 cut(s) 421, 518
LpnPI CCDG 6 cut(s) 66, 271, 403, 556, 580, 627
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 3 cut(s) 107, 151, 322
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 426, 438
MluCI AATT 8 cut(s) 6, 70, 126, 141, 227, 232, 373, 652
MnlI CCTC 7 cut(s) 84, 146, 202, 219, 545, 612, 659
MseI TTAA 2 cut(s) 9, 255
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 36
NdeII GATC 1 cut(s) 492
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 322
PfeI GAWTC 2 cut(s) 331, 579
PshBI ATTAAT 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 668
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 9, 255
Sau3AI GATC 1 cut(s) 492
Sau96I GGNCC 1 cut(s) 668
SduI GDGCHC 2 cut(s) 426, 438
SetI ASST 8 cut(s) 41, 109, 138, 194, 275, 523, 556, 643
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 8 cut(s) 6, 70, 126, 141, 227, 232, 373, 652
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 356, 392, 596
TasI AATT 8 cut(s) 6, 70, 126, 141, 227, 232, 373, 652
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 2 cut(s) 331, 579
Tru1I TTAA 2 cut(s) 9, 255
Tru9I TTAA 2 cut(s) 9, 255
TscAI CASTG 1 cut(s) 611
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 351, 689
TspRI CASTG 1 cut(s) 611
VneI GTGCAC 1 cut(s) 434
VspI ATTAAT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.